Wall clock time and date at job start Tue Mar 31 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47190 * 2 1 4 4 N 1.29428 * 124.80312 * 90.28387 * 3 2 1 5 5 C 1.30944 * 117.36216 * 180.17729 * 4 3 2 6 6 C 1.35663 * 114.18850 * 359.56231 * 5 4 3 7 7 C 1.46683 * 126.12835 * 180.23446 * 6 5 4 8 8 O 1.21688 * 119.99815 * 352.31484 * 7 6 5 9 9 N 1.34772 * 120.00361 * 172.32590 * 7 6 5 10 10 C 1.46501 * 119.99844 * 2.12528 * 9 7 6 11 11 C 1.50703 * 109.46912 * 82.35255 * 10 9 7 12 12 H 1.08008 * 119.99790 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00137 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 89.99784 * 15 13 11 17 17 H 1.48493 * 109.47011 * 209.99796 * 15 13 11 18 18 H 1.48494 * 109.47166 * 330.00074 * 15 13 11 19 19 C 1.46498 * 120.00347 * 182.13469 * 9 7 6 20 20 C 1.53005 * 109.47276 * 85.08547 * 19 9 7 21 21 C 1.47195 * 109.47008 * 180.02562 * 20 19 9 22 22 N 9.27024 * 148.04776 * 135.74724 * 3 1 2 23 23 S 1.70950 * 124.80277 * 270.00258 * 3 2 1 24 24 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47199 * 299.99744 * 1 2 3 26 26 H 1.09000 * 109.47270 * 60.00008 * 1 2 3 27 27 H 1.09003 * 109.47199 * 240.00256 * 2 1 3 28 28 H 1.09000 * 109.47270 * 119.99992 * 2 1 3 29 29 H 1.07994 * 122.90493 * 179.82306 * 5 4 3 30 30 H 1.08997 * 109.47364 * 202.35221 * 10 9 7 31 31 H 1.08996 * 109.47320 * 322.35456 * 10 9 7 32 32 H 0.97000 * 120.00356 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.46957 * 205.08799 * 19 9 7 34 34 H 1.09000 * 109.47157 * 325.08803 * 19 9 7 35 35 H 1.08997 * 109.46822 * 299.99931 * 20 19 9 36 36 H 1.09000 * 109.46818 * 60.00049 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2835 2.1156 1.0627 5 6 2.7122 3.3412 0.8932 6 6 2.8422 3.7099 -0.4059 7 6 3.3038 5.0143 -0.8926 8 8 3.4784 5.9290 -0.1092 9 7 3.5344 5.1999 -2.2074 10 6 3.2796 4.1133 -3.1564 11 6 1.8142 4.0858 -3.5068 12 1 1.1400 4.8055 -3.0664 13 6 1.3339 3.1412 -4.3888 14 7 2.1546 2.2645 -4.9248 15 14 -0.4828 3.1067 -4.8227 16 1 -0.7260 3.9726 -6.0043 17 1 -0.8901 1.7138 -5.1374 18 1 -1.2763 3.6063 -3.6712 19 6 4.0401 6.4883 -2.6878 20 6 5.5652 6.5142 -2.5684 21 6 6.0732 7.8089 -3.0504 22 7 6.4653 8.8077 -3.4235 23 16 2.3575 2.3408 -1.4037 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9461 4.0000 1.7163 30 1 3.8664 4.2753 -4.0605 31 1 3.5631 3.1626 -2.7048 32 1 1.8168 1.6001 -5.5456 33 1 3.7549 6.6244 -3.7310 34 1 3.6149 7.2923 -2.0870 35 1 5.8503 6.3781 -1.5252 36 1 5.9904 5.7102 -3.1691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049377209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:20 Heat of formation + Delta-G solvation = 13.576818 kcal Electronic energy + Delta-G solvation = -21053.854186 eV Core-core repulsion = 17857.354915 eV Total energy + Delta-G solvation = -3196.499271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05513 -40.08535 -37.90605 -36.85599 -34.93049 -34.65470 -32.82597 -30.41480 -29.15875 -26.98591 -25.37949 -24.98336 -23.49648 -21.76792 -19.45344 -19.24702 -18.77328 -18.36914 -17.48406 -17.15257 -16.38762 -16.07877 -15.83892 -15.66243 -15.33827 -15.01705 -14.64376 -14.45030 -14.38867 -14.18085 -13.74319 -13.61642 -13.48550 -13.10545 -12.94649 -12.75970 -12.68462 -12.51398 -12.17192 -11.98554 -11.92329 -11.82945 -11.74471 -11.03192 -10.68676 -10.07418 -9.99849 -9.77258 -9.36407 -8.20536 -6.27076 -0.44708 0.69787 1.12950 1.43404 1.50430 1.54875 1.58631 1.70609 1.78335 2.17261 2.36063 2.45142 3.12839 3.14697 3.36443 3.78215 4.10398 4.12921 4.17716 4.34071 4.40936 4.52504 4.56215 4.75188 4.80494 4.86241 5.00541 5.01660 5.08881 5.14634 5.30584 5.41055 5.62206 5.77008 5.95775 6.38679 6.54598 6.75263 6.93498 7.18122 7.37260 8.83323 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.006716 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.531570 B = 4168.094663 C = 5783.617248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.046 4.046 4 N -0.513 5.513 5 C 0.098 3.902 6 C -0.342 4.342 7 C 0.596 3.404 8 O -0.577 6.577 9 N -0.592 5.592 10 C 0.234 3.766 11 C -0.545 4.545 12 H 0.052 0.948 13 C 0.056 3.944 14 N -0.890 5.890 15 Si 0.923 3.077 16 H -0.278 1.278 17 H -0.273 1.273 18 H -0.276 1.276 19 C 0.126 3.874 20 C -0.032 4.032 21 C 0.246 3.754 22 N -0.488 5.488 23 S 0.350 5.650 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.181 0.819 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.273 0.727 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -5.634 3.714 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.316 4.316 4 N -0.229 5.229 5 C -0.064 4.064 6 C -0.467 4.467 7 C 0.385 3.615 8 O -0.460 6.460 9 N -0.321 5.321 10 C 0.111 3.889 11 C -0.586 4.586 12 H 0.070 0.930 13 C -0.149 4.149 14 N -0.526 5.526 15 Si 0.749 3.251 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.201 1.201 19 C 0.001 3.999 20 C -0.073 4.073 21 C -0.071 4.071 22 N -0.166 5.166 23 S 0.615 5.385 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.197 0.803 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.153 -4.420 2.812 5.364 hybrid contribution -1.000 0.416 0.538 1.210 sum 0.152 -4.004 3.351 5.223 Atomic orbital electron populations 1.21758 0.93306 1.03529 1.01626 1.20291 0.96925 0.86748 1.04755 1.29033 1.01435 1.03813 0.97270 1.66291 1.17082 1.06038 1.33498 1.22054 0.97084 0.92133 0.95163 1.25838 1.19771 1.02144 0.98957 1.16933 0.76509 0.85680 0.82352 1.90717 1.55948 1.43174 1.56169 1.47954 1.62886 1.15182 1.06107 1.19598 0.96560 0.84112 0.88616 1.21507 0.93942 1.16132 1.27062 0.93010 1.25187 1.00123 0.94701 0.94882 1.69911 1.35823 1.17550 1.29355 0.86075 0.82299 0.78033 0.78678 1.20408 1.19788 1.20145 1.21275 0.91619 0.85227 1.01738 1.19713 0.95771 0.87360 1.04462 1.29153 0.92100 0.94243 0.91634 1.81219 1.10785 1.13196 1.11442 1.86528 1.51539 0.98949 1.01448 0.89041 0.93059 0.93487 0.88583 0.88503 0.80256 0.92362 0.94113 0.91692 0.88268 0.90481 0.86431 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.89 71.98 0.71 -2.59 16 2 C -0.05 -1.18 6.51 29.85 0.19 -0.98 16 3 C -0.05 -1.51 6.64 88.46 0.59 -0.92 16 4 N -0.51 -18.29 10.51 -190.30 -2.00 -20.29 16 5 C 0.10 3.55 11.10 84.23 0.93 4.48 16 6 C -0.34 -12.98 6.24 23.88 0.15 -12.83 16 7 C 0.60 22.97 7.54 86.45 0.65 23.63 16 8 O -0.58 -23.78 16.52 -4.31 -0.07 -23.85 16 9 N -0.59 -20.80 2.49 -830.88 -2.07 -22.87 16 10 C 0.23 9.01 4.72 85.63 0.40 9.42 16 11 C -0.55 -23.71 7.01 25.60 0.18 -23.53 16 12 H 0.05 2.42 7.81 -2.91 -0.02 2.39 16 13 C 0.06 2.45 5.06 84.65 0.43 2.88 16 14 N -0.89 -39.79 13.29 21.44 0.28 -39.50 16 15 Si 0.92 36.45 29.54 68.60 2.03 38.47 16 16 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 19 C 0.13 3.59 5.30 86.38 0.46 4.05 16 20 C -0.03 -0.72 5.99 28.79 0.17 -0.54 16 21 C 0.25 6.38 15.43 89.44 1.38 7.76 16 22 N -0.49 -15.28 18.54 20.00 0.37 -14.91 16 23 S 0.35 12.76 16.15 -56.49 -0.91 11.85 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.18 5.99 8.06 -2.91 -0.02 5.96 16 30 H 0.06 2.24 8.01 -2.39 -0.02 2.22 16 31 H 0.04 1.65 4.50 -20.90 -0.09 1.56 16 32 H 0.27 11.76 8.31 -92.71 -0.77 10.98 16 33 H 0.10 2.69 8.03 -2.39 -0.02 2.67 16 34 H 0.08 2.33 7.54 -2.39 -0.02 2.31 16 35 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 36 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -54.44 329.05 4.90 -49.54 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.02 Total: 10.76 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.25 Total: 10.81 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.41 Total: -97.57 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.07 Total: -23.85 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.47 kcal Atomic # 16 Polarization: 12.76 SS G_CDS: -0.91 Total: 11.85 kcal Total: -54.44 4.90 -49.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.114 kcal (2) G-P(sol) polarization free energy of solvation -54.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds