Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29426 * 124.80335 * 2 1 4 4 C 1.30942 * 117.36506 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.90336 * 180.02562 * 4 3 2 6 6 C 1.35661 * 114.18831 * 0.02562 * 4 3 2 7 7 C 1.46688 * 126.12750 * 180.02562 * 6 4 3 8 8 O 1.21693 * 119.99852 * 351.85813 * 7 6 4 9 9 N 1.34770 * 120.00063 * 171.85746 * 7 6 4 10 10 C 1.46508 * 119.99963 * 2.39699 * 9 7 6 11 11 C 1.50699 * 109.46922 * 82.56053 * 10 9 7 12 12 H 1.07992 * 120.00398 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99552 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00096 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47024 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47452 * 119.99449 * 15 13 11 18 18 H 1.48505 * 109.47208 * 239.99855 * 15 13 11 19 19 C 1.46497 * 120.00215 * 182.39152 * 9 7 6 20 20 C 1.53001 * 109.46872 * 94.94249 * 19 9 7 21 21 C 1.47204 * 109.46817 * 180.02562 * 20 19 9 22 22 N 9.28823 * 154.14823 * 153.99102 * 2 1 3 23 23 S 1.70951 * 124.80382 * 180.27263 * 2 1 3 24 24 H 1.09008 * 109.47044 * 90.02860 * 1 2 3 25 25 H 1.09002 * 109.46980 * 210.02106 * 1 2 3 26 26 H 1.08994 * 109.47375 * 330.02936 * 1 2 3 27 27 H 1.09000 * 109.47290 * 269.97400 * 5 4 3 28 28 H 1.09000 * 109.47601 * 29.97876 * 5 4 3 29 29 H 1.08997 * 109.47039 * 149.97945 * 5 4 3 30 30 H 1.08998 * 109.47056 * 202.56234 * 10 9 7 31 31 H 1.08997 * 109.47033 * 322.55591 * 10 9 7 32 32 H 0.97004 * 120.00034 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.47159 * 214.94119 * 19 9 7 34 34 H 1.08996 * 109.47043 * 334.94146 * 19 9 7 35 35 H 1.08992 * 109.46921 * 299.99516 * 20 19 9 36 36 H 1.08996 * 109.47477 * 60.00642 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5196 2.0418 0.0012 6 6 3.9351 -0.4058 0.0004 7 6 5.3189 -0.8925 0.0015 8 8 6.2391 -0.1102 -0.1468 9 7 5.5711 -2.2061 0.1666 10 6 4.4618 -3.1548 0.2924 11 6 3.9542 -3.5189 -1.0790 12 1 4.4117 -3.0865 -1.9565 13 6 2.9049 -4.4032 -1.2133 14 7 2.3474 -4.9293 -0.1447 15 14 2.2760 -4.8551 -2.9132 16 1 3.0672 -4.1330 -3.9418 17 1 2.4145 -6.3192 -3.1193 18 1 0.8461 -4.4718 -3.0301 19 6 6.9544 -2.6853 0.2201 20 6 7.4025 -2.7879 1.6794 21 6 8.7927 -3.2689 1.7332 22 7 9.8657 -3.6399 1.7760 23 16 2.4827 -1.4037 -0.0067 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 4.7557 2.3187 -1.0263 28 1 4.0762 2.8949 0.5146 29 1 5.4328 1.7426 0.5156 30 1 4.8086 -4.0538 0.8020 31 1 3.6569 -2.6984 0.8685 32 1 1.6094 -5.5517 -0.2392 33 1 7.0172 -3.6672 -0.2491 34 1 7.6016 -1.9870 -0.3105 35 1 7.3397 -1.8061 2.1486 36 1 6.7553 -3.4863 2.2100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049377358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = 29.286853 kcal Electronic energy + Delta-G solvation = -21250.451644 eV Core-core repulsion = 18054.633611 eV Total energy + Delta-G solvation = -3195.818033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71974 -38.68441 -36.69294 -35.37593 -33.29285 -32.35246 -31.34349 -28.72665 -27.78425 -27.48309 -24.06083 -23.35138 -22.22343 -20.29138 -17.93030 -17.53233 -17.40594 -16.80004 -16.08432 -15.41433 -14.85895 -14.73320 -14.60824 -14.16684 -13.95483 -13.37804 -13.03019 -12.88046 -12.78004 -12.53777 -12.46411 -12.38523 -12.22422 -11.90319 -11.79547 -11.58780 -11.49041 -11.18923 -11.04137 -10.78347 -10.41722 -10.34403 -10.04730 -9.35575 -9.03223 -8.58362 -8.50361 -8.23791 -7.75086 -6.49454 -4.52802 1.00249 2.17386 2.57249 2.79639 2.89137 3.05980 3.09841 3.16650 3.21234 3.56679 3.80571 4.10963 4.30624 4.66261 4.85501 5.10850 5.24310 5.41272 5.48592 5.58932 5.69952 5.73590 5.74864 5.99346 6.09586 6.11720 6.15434 6.28481 6.38213 6.39923 6.72919 6.89516 7.16046 7.46701 7.62711 7.65076 7.93937 8.40363 8.48064 8.72988 9.09043 10.54900 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.007813 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.350001 B = 3582.813238 C = 5513.509221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.061 4.061 3 N -0.501 5.501 4 C 0.125 3.875 5 C -0.076 4.076 6 C -0.328 4.328 7 C 0.601 3.399 8 O -0.555 6.555 9 N -0.597 5.597 10 C 0.226 3.774 11 C -0.539 4.539 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.128 3.872 20 C -0.046 4.046 21 C 0.221 3.779 22 N -0.448 5.448 23 S 0.368 5.632 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.271 0.729 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 4.373 2.578 5.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.331 4.331 3 N -0.218 5.218 4 C -0.018 4.018 5 C -0.135 4.135 6 C -0.453 4.453 7 C 0.390 3.610 8 O -0.437 6.437 9 N -0.327 5.327 10 C 0.104 3.896 11 C -0.581 4.581 12 H 0.088 0.912 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.716 3.284 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.203 1.203 19 C 0.003 3.997 20 C -0.088 4.088 21 C -0.097 4.097 22 N -0.126 5.126 23 S 0.634 5.366 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.023 3.482 2.645 4.490 hybrid contribution -0.449 0.382 -0.980 1.143 sum -1.473 3.863 1.665 4.457 Atomic orbital electron populations 1.20289 0.86770 1.03154 1.02943 1.28396 1.02858 0.98546 1.03255 1.66072 1.04023 1.33265 1.18461 1.20332 0.90260 0.93219 0.97951 1.20420 0.96711 0.93689 1.02686 1.25504 0.99178 0.97880 1.22777 1.16794 0.86364 0.81979 0.75892 1.90694 1.45271 1.55418 1.52275 1.47957 1.07218 1.06881 1.70674 1.19753 0.83318 0.88429 0.98139 1.21551 1.17115 1.26905 0.92508 0.91171 1.24895 0.95846 0.94843 0.97383 1.69900 1.23593 1.29114 1.28426 0.86530 0.79183 0.78769 0.83926 1.19271 1.20412 1.20250 1.21139 0.83597 1.01837 0.93170 1.19785 0.84177 1.03507 1.01283 1.29074 0.94825 0.92846 0.92988 1.81196 1.12634 1.09958 1.08772 1.86528 0.91400 1.00330 1.58345 0.90535 0.90572 0.90582 0.91173 0.91943 0.89257 0.92564 0.94034 0.91909 0.89293 0.89292 0.87262 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.46 36.01 0.38 -0.60 16 2 C -0.06 -1.08 7.39 -13.29 -0.10 -1.18 16 3 N -0.50 -9.55 10.50 -7.71 -0.08 -9.63 16 4 C 0.13 2.39 6.79 -83.90 -0.57 1.82 16 5 C -0.08 -1.25 9.60 36.00 0.35 -0.90 16 6 C -0.33 -6.46 6.23 -37.09 -0.23 -6.69 16 7 C 0.60 11.74 7.54 -12.85 -0.10 11.65 16 8 O -0.55 -11.28 13.90 5.20 0.07 -11.21 16 9 N -0.60 -10.76 2.48 -176.60 -0.44 -11.20 16 10 C 0.23 4.46 4.77 -5.19 -0.02 4.44 16 11 C -0.54 -11.92 7.04 -34.44 -0.24 -12.16 16 12 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.08 1.73 5.07 -17.82 -0.09 1.63 16 14 N -0.87 -20.10 13.29 55.43 0.74 -19.36 16 15 Si 0.89 18.26 29.54 -169.99 -5.02 13.24 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.13 1.89 5.40 -4.04 -0.02 1.87 16 20 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 21 C 0.22 2.99 15.43 -20.75 -0.32 2.67 16 22 N -0.45 -7.16 18.54 42.16 0.78 -6.38 16 23 S 0.37 6.99 16.18 -107.50 -1.74 5.25 16 24 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.50 6.22 -51.93 -0.32 1.18 16 30 H 0.06 1.12 8.02 -51.93 -0.42 0.70 16 31 H 0.04 0.87 4.49 -22.81 -0.10 0.76 16 32 H 0.27 5.99 8.31 -40.82 -0.34 5.65 16 33 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.09 1.36 7.25 -51.93 -0.38 0.99 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -26.60 324.67 -6.09 -32.69 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.14 Total: -0.11 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.15 Total: 1.82 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 1.00 Total: -46.57 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.74 Total: 5.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.60 -6.09 -32.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.974 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds