Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29426 * 124.80335 * 2 1 4 4 C 1.30942 * 117.36506 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.90336 * 180.02562 * 4 3 2 6 6 C 1.35661 * 114.18831 * 0.02562 * 4 3 2 7 7 C 1.46688 * 126.12750 * 180.02562 * 6 4 3 8 8 O 1.21693 * 119.99852 * 351.85813 * 7 6 4 9 9 N 1.34770 * 120.00063 * 171.85746 * 7 6 4 10 10 C 1.46508 * 119.99963 * 2.39699 * 9 7 6 11 11 C 1.50699 * 109.46922 * 82.56053 * 10 9 7 12 12 H 1.07992 * 120.00398 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99552 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00096 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47024 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47452 * 119.99449 * 15 13 11 18 18 H 1.48505 * 109.47208 * 239.99855 * 15 13 11 19 19 C 1.46497 * 120.00215 * 182.39152 * 9 7 6 20 20 C 1.53001 * 109.46872 * 94.94249 * 19 9 7 21 21 C 1.47204 * 109.46817 * 180.02562 * 20 19 9 22 22 N 9.28823 * 154.14823 * 153.99102 * 2 1 3 23 23 S 1.70951 * 124.80382 * 180.27263 * 2 1 3 24 24 H 1.09008 * 109.47044 * 90.02860 * 1 2 3 25 25 H 1.09002 * 109.46980 * 210.02106 * 1 2 3 26 26 H 1.08994 * 109.47375 * 330.02936 * 1 2 3 27 27 H 1.09000 * 109.47290 * 269.97400 * 5 4 3 28 28 H 1.09000 * 109.47601 * 29.97876 * 5 4 3 29 29 H 1.08997 * 109.47039 * 149.97945 * 5 4 3 30 30 H 1.08998 * 109.47056 * 202.56234 * 10 9 7 31 31 H 1.08997 * 109.47033 * 322.55591 * 10 9 7 32 32 H 0.97004 * 120.00034 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.47159 * 214.94119 * 19 9 7 34 34 H 1.08996 * 109.47043 * 334.94146 * 19 9 7 35 35 H 1.08992 * 109.46921 * 299.99516 * 20 19 9 36 36 H 1.08996 * 109.47477 * 60.00642 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5196 2.0418 0.0012 6 6 3.9351 -0.4058 0.0004 7 6 5.3189 -0.8925 0.0015 8 8 6.2391 -0.1102 -0.1468 9 7 5.5711 -2.2061 0.1666 10 6 4.4618 -3.1548 0.2924 11 6 3.9542 -3.5189 -1.0790 12 1 4.4117 -3.0865 -1.9565 13 6 2.9049 -4.4032 -1.2133 14 7 2.3474 -4.9293 -0.1447 15 14 2.2760 -4.8551 -2.9132 16 1 3.0672 -4.1330 -3.9418 17 1 2.4145 -6.3192 -3.1193 18 1 0.8461 -4.4718 -3.0301 19 6 6.9544 -2.6853 0.2201 20 6 7.4025 -2.7879 1.6794 21 6 8.7927 -3.2689 1.7332 22 7 9.8657 -3.6399 1.7760 23 16 2.4827 -1.4037 -0.0067 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 4.7557 2.3187 -1.0263 28 1 4.0762 2.8949 0.5146 29 1 5.4328 1.7426 0.5156 30 1 4.8086 -4.0538 0.8020 31 1 3.6569 -2.6984 0.8685 32 1 1.6094 -5.5517 -0.2392 33 1 7.0172 -3.6672 -0.2491 34 1 7.6016 -1.9870 -0.3105 35 1 7.3397 -1.8061 2.1486 36 1 6.7553 -3.4863 2.2100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049377358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = 15.038023 kcal Electronic energy + Delta-G solvation = -21251.069519 eV Core-core repulsion = 18054.633611 eV Total energy + Delta-G solvation = -3196.435908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17827 -40.12064 -37.90714 -36.84428 -34.85425 -33.73381 -32.62666 -29.96438 -29.32399 -28.92342 -25.39771 -24.94185 -23.56119 -21.71275 -19.36869 -18.94862 -18.75841 -18.31503 -17.52188 -16.82029 -16.36571 -16.24543 -15.81726 -15.50000 -15.31729 -14.69522 -14.41602 -14.28116 -14.16453 -13.92622 -13.80236 -13.65042 -13.48048 -13.15620 -13.08128 -12.87569 -12.84853 -12.70807 -12.59144 -12.17833 -11.84521 -11.79395 -11.70231 -10.88839 -10.65656 -10.07525 -9.98960 -9.71922 -9.20856 -8.20156 -6.26617 -0.43941 0.72475 1.12856 1.42276 1.50129 1.55569 1.58963 1.70439 1.79095 2.19210 2.33666 2.45144 3.12967 3.16124 3.34440 3.79548 4.11270 4.17798 4.21444 4.34416 4.54887 4.65815 4.71839 4.76384 4.82817 4.86996 4.93867 5.01845 5.05440 5.16135 5.16848 5.53598 5.63770 5.78718 5.97035 6.41640 6.55503 6.76336 6.95522 7.21979 7.38050 8.83692 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.007813 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.350001 B = 3582.813238 C = 5513.509221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.046 4.046 3 N -0.516 5.516 4 C 0.119 3.881 5 C -0.071 4.071 6 C -0.348 4.348 7 C 0.596 3.404 8 O -0.568 6.568 9 N -0.594 5.594 10 C 0.234 3.766 11 C -0.543 4.543 12 H 0.050 0.950 13 C 0.054 3.946 14 N -0.890 5.890 15 Si 0.925 3.075 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.271 1.271 19 C 0.124 3.876 20 C -0.031 4.031 21 C 0.246 3.754 22 N -0.489 5.489 23 S 0.339 5.661 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.273 0.727 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 4.837 2.915 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.316 4.316 3 N -0.233 5.233 4 C -0.023 4.023 5 C -0.130 4.130 6 C -0.473 4.473 7 C 0.386 3.614 8 O -0.451 6.451 9 N -0.323 5.323 10 C 0.111 3.889 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.150 4.150 14 N -0.528 5.528 15 Si 0.751 3.249 16 H -0.204 1.204 17 H -0.205 1.205 18 H -0.196 1.196 19 C 0.000 4.000 20 C -0.072 4.072 21 C -0.071 4.071 22 N -0.167 5.167 23 S 0.604 5.396 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.985 3.925 2.981 5.313 hybrid contribution -0.210 0.329 -1.103 1.170 sum -2.194 4.254 1.878 5.142 Atomic orbital electron populations 1.20507 0.83816 1.04742 1.04375 1.28989 1.04561 0.97323 1.00738 1.66176 1.04090 1.33584 1.19480 1.20789 0.90836 0.93787 0.96913 1.20432 0.96042 0.93475 1.03091 1.25605 0.99397 0.98292 1.24032 1.16871 0.86321 0.82330 0.75895 1.90678 1.45588 1.55726 1.53130 1.47919 1.08029 1.06214 1.70176 1.19572 0.83791 0.88615 0.96916 1.21527 1.17196 1.26881 0.92835 0.93127 1.25201 0.96011 0.94960 0.98852 1.69925 1.24055 1.29668 1.29103 0.86001 0.78911 0.78230 0.81755 1.20392 1.20470 1.19643 1.21258 0.81948 1.01684 0.95120 1.19713 0.83347 1.04695 0.99482 1.29177 0.94626 0.91611 0.91728 1.81227 1.13907 1.11510 1.10060 1.86510 0.92000 1.01460 1.59635 0.88998 0.88964 0.89013 0.90754 0.90143 0.89744 0.92411 0.94150 0.91753 0.88952 0.89862 0.86053 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.46 71.24 0.75 -1.08 16 2 C -0.05 -1.54 7.39 88.46 0.65 -0.89 16 3 N -0.52 -18.83 10.50 -178.29 -1.87 -20.70 16 4 C 0.12 4.42 6.79 42.09 0.29 4.71 16 5 C -0.07 -2.26 9.60 71.23 0.68 -1.58 16 6 C -0.35 -13.52 6.23 23.88 0.15 -13.37 16 7 C 0.60 23.04 7.54 86.45 0.65 23.69 16 8 O -0.57 -22.81 13.90 -4.32 -0.06 -22.87 16 9 N -0.59 -21.00 2.48 -830.86 -2.06 -23.06 16 10 C 0.23 9.10 4.77 85.63 0.41 9.51 16 11 C -0.54 -23.88 7.04 25.60 0.18 -23.70 16 12 H 0.05 2.40 7.81 -2.91 -0.02 2.37 16 13 C 0.05 2.41 5.07 84.66 0.43 2.84 16 14 N -0.89 -40.20 13.29 21.45 0.28 -39.91 16 15 Si 0.92 36.83 29.54 68.60 2.03 38.85 16 16 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 C 0.12 3.56 5.40 86.38 0.47 4.02 16 20 C -0.03 -0.69 6.03 28.79 0.17 -0.52 16 21 C 0.25 6.33 15.43 89.44 1.38 7.71 16 22 N -0.49 -15.25 18.54 20.01 0.37 -14.88 16 23 S 0.34 12.60 16.18 -56.49 -0.91 11.68 16 24 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.76 6.22 -2.39 -0.01 2.74 16 30 H 0.06 2.23 8.02 -2.39 -0.02 2.21 16 31 H 0.04 1.66 4.49 -20.91 -0.09 1.57 16 32 H 0.27 11.80 8.31 -92.71 -0.77 11.03 16 33 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 34 H 0.08 2.50 7.25 -2.39 -0.02 2.48 16 35 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -55.20 324.67 5.01 -50.19 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.03 Total: 9.36 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.21 Total: 11.35 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -3.28 Total: -98.56 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.87 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 12.60 SS G_CDS: -0.91 Total: 11.68 kcal Total: -55.20 5.01 -50.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.225 kcal (2) G-P(sol) polarization free energy of solvation -55.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds