Wall clock time and date at job start Tue Mar 31 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29025 * 124.91718 * 2 1 4 4 C 1.31783 * 117.12571 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74801 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47465 * 305.02365 * 5 4 3 7 7 O 1.21283 * 119.99478 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00036 * 179.72648 * 8 6 5 10 10 C 1.50703 * 109.47126 * 270.27831 * 9 8 6 11 11 H 1.08002 * 119.99820 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46767 * 89.99886 * 14 12 10 16 16 H 1.48493 * 109.47240 * 210.00027 * 14 12 10 17 17 H 1.48500 * 109.46974 * 329.99973 * 14 12 10 18 18 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 19 19 C 1.53000 * 109.46992 * 269.72101 * 18 8 6 20 20 C 1.47196 * 109.47137 * 179.97438 * 19 18 8 21 21 N 8.67120 * 134.18253 * 21.79033 * 2 1 3 22 22 C 1.33629 * 114.50283 * 0.23310 * 4 3 2 23 23 S 1.70979 * 124.91904 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46781 * 90.00121 * 1 2 3 25 25 H 1.08998 * 109.47316 * 209.99947 * 1 2 3 26 26 H 1.09001 * 109.47233 * 330.00701 * 1 2 3 27 27 H 1.09009 * 109.47290 * 185.02736 * 5 4 3 28 28 H 1.09001 * 109.47203 * 65.02511 * 5 4 3 29 29 H 1.08994 * 109.47173 * 30.28203 * 9 8 6 30 30 H 1.09005 * 109.47077 * 150.28374 * 9 8 6 31 31 H 0.96995 * 119.99689 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.46803 * 29.71536 * 18 8 6 33 33 H 1.09000 * 109.47214 * 149.72329 * 18 8 6 34 34 H 1.09000 * 109.47214 * 300.00285 * 19 18 8 35 35 H 1.09008 * 109.47142 * 59.99450 * 19 18 8 36 36 H 1.08002 * 126.04286 * 179.76000 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9356 -1.1642 7 8 3.3235 2.6802 -1.9189 8 7 4.9914 4.0346 -1.3661 9 6 4.7106 4.9169 -2.5014 10 6 5.4977 4.4573 -3.7016 11 1 6.1430 3.5946 -3.6260 12 6 5.3948 5.1389 -4.8956 13 7 4.6094 6.1898 -4.9874 14 14 6.3710 4.5698 -6.3831 15 1 5.5667 3.5912 -7.1581 16 1 6.6909 5.7382 -7.2419 17 1 7.6315 3.9274 -5.9317 18 6 6.0957 4.3433 -0.4541 19 6 5.5834 5.2244 0.6870 20 6 6.6926 5.5341 1.6037 21 7 7.5503 5.7740 2.3083 22 6 3.9354 -0.4005 -0.0040 23 16 2.4857 -1.4020 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 5.5449 1.6352 -0.0895 28 1 4.4368 2.5834 0.9312 29 1 3.6456 4.8851 -2.7314 30 1 4.9973 5.9375 -2.2480 31 1 4.5374 6.6695 -5.8274 32 1 6.4988 3.4169 -0.0450 33 1 6.8789 4.8717 -0.9976 34 1 5.1801 6.1508 0.2779 35 1 4.8000 4.6960 1.2305 36 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057027446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:21 Heat of formation + Delta-G solvation = 33.743018 kcal Electronic energy + Delta-G solvation = -20536.248625 eV Core-core repulsion = 17340.623826 eV Total energy + Delta-G solvation = -3195.624799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10769 -38.74422 -36.81083 -35.16039 -33.18047 -32.70049 -30.80255 -29.80706 -27.99635 -26.80160 -23.98904 -23.44163 -22.24016 -19.67239 -18.73906 -17.75060 -17.20522 -16.55014 -16.42829 -15.57723 -15.12296 -14.80074 -14.65456 -14.44726 -14.16539 -13.66743 -13.58000 -13.19500 -12.86556 -12.71359 -12.41183 -12.36762 -12.22251 -12.09190 -11.82060 -11.67700 -11.36512 -11.19016 -10.97190 -10.80620 -10.59723 -10.17336 -9.68648 -9.48572 -9.30187 -9.01129 -8.56957 -8.45443 -7.79067 -6.07032 -4.11496 0.79098 1.42712 1.77192 2.75029 2.83228 2.89574 3.30040 3.35711 3.36801 3.42026 3.71806 4.11491 4.25480 4.43348 4.87426 4.99351 5.10514 5.18463 5.21109 5.26921 5.28160 5.34737 5.41811 5.45461 5.53637 5.81241 5.82189 5.86473 6.09079 6.23244 6.97939 7.40882 7.47141 7.59378 7.89105 7.91818 8.19883 8.30714 8.87618 9.05084 9.53945 11.01074 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.005029 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.487604 B = 5565.888709 C = 7336.327781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.442 5.442 4 C 0.099 3.901 5 C -0.073 4.073 6 C 0.512 3.488 7 O -0.513 6.513 8 N -0.600 5.600 9 C 0.246 3.754 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.118 3.882 19 C -0.052 4.052 20 C 0.218 3.782 21 N -0.447 5.447 22 C -0.260 4.260 23 S 0.091 5.909 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -11.732 12.803 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.226 4.226 3 N -0.156 5.156 4 C -0.034 4.034 5 C -0.116 4.116 6 C 0.298 3.702 7 O -0.388 6.388 8 N -0.333 5.333 9 C 0.128 3.872 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.009 4.009 19 C -0.093 4.093 20 C -0.100 4.100 21 N -0.125 5.125 22 C -0.399 4.399 23 S 0.345 5.655 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.444 -11.926 13.291 18.186 hybrid contribution 0.987 0.391 -1.253 1.642 sum -2.457 -11.535 12.038 16.852 Atomic orbital electron populations 1.20423 0.85362 1.03804 1.04021 1.27014 1.01710 0.90456 1.03420 1.65996 1.04354 1.30999 1.14262 1.19649 0.90005 0.93175 1.00527 1.20424 0.97469 0.93778 0.99963 1.19971 0.82819 0.81670 0.85779 1.90722 1.29814 1.71739 1.46503 1.48189 1.30716 1.25675 1.28677 1.19319 0.98340 0.87951 0.81635 1.21425 1.26443 1.13392 0.95381 0.92453 1.24912 0.95493 0.94900 0.98666 1.69921 1.37858 1.18977 1.26501 0.86535 0.80229 0.78217 0.82660 1.20612 1.21162 1.19935 1.21298 0.90930 0.98811 0.89823 1.19926 0.91692 1.04135 0.93567 1.29116 0.94307 0.92949 0.93628 1.81190 1.10947 1.09354 1.10967 1.26696 1.02925 0.95623 1.14654 1.83761 0.98392 1.13638 1.69663 0.89510 0.90428 0.89272 0.87747 0.87792 0.93601 0.94760 0.92703 0.90718 0.88784 0.86463 0.87519 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 36.00 0.38 -0.35 16 2 C 0.05 0.71 7.39 -13.46 -0.10 0.61 16 3 N -0.44 -7.25 9.68 -8.06 -0.08 -7.33 16 4 C 0.10 1.48 5.64 -84.23 -0.47 1.01 16 5 C -0.07 -1.00 4.74 -29.03 -0.14 -1.14 16 6 C 0.51 9.75 7.64 -10.99 -0.08 9.67 16 7 O -0.51 -12.48 15.03 5.55 0.08 -12.39 16 8 N -0.60 -11.10 2.46 -175.05 -0.43 -11.53 16 9 C 0.25 5.91 5.16 -5.19 -0.03 5.89 16 10 C -0.53 -14.21 9.38 -34.44 -0.32 -14.54 16 11 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 14 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 C 0.12 1.56 5.17 -4.04 -0.02 1.53 16 19 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 20 C 0.22 2.63 15.43 -20.77 -0.32 2.31 16 21 N -0.45 -6.57 18.54 42.14 0.78 -5.79 16 22 C -0.26 -3.26 11.07 29.12 0.32 -2.93 16 23 S 0.09 1.03 23.18 -107.50 -2.49 -1.46 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 1.13 7.29 -51.92 -0.38 0.75 16 28 H 0.10 1.13 7.22 -51.93 -0.37 0.75 16 29 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 33 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.11 0.93 7.25 -51.92 -0.38 0.56 16 36 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -35.33 335.10 -6.78 -42.11 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.35 Total: -2.97 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.06 Total: 2.97 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 1.01 Total: -49.67 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.33 -6.78 -42.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.848 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds