Wall clock time and date at job start Tue Mar 31 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29025 * 124.91718 * 2 1 4 4 C 1.31783 * 117.12571 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.74801 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47465 * 305.02365 * 5 4 3 7 7 O 1.21283 * 119.99478 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00430 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00036 * 179.72648 * 8 6 5 10 10 C 1.50703 * 109.47126 * 270.27831 * 9 8 6 11 11 H 1.08002 * 119.99820 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00045 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46767 * 89.99886 * 14 12 10 16 16 H 1.48493 * 109.47240 * 210.00027 * 14 12 10 17 17 H 1.48500 * 109.46974 * 329.99973 * 14 12 10 18 18 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 19 19 C 1.53000 * 109.46992 * 269.72101 * 18 8 6 20 20 C 1.47196 * 109.47137 * 179.97438 * 19 18 8 21 21 N 8.67120 * 134.18253 * 21.79033 * 2 1 3 22 22 C 1.33629 * 114.50283 * 0.23310 * 4 3 2 23 23 S 1.70979 * 124.91904 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46781 * 90.00121 * 1 2 3 25 25 H 1.08998 * 109.47316 * 209.99947 * 1 2 3 26 26 H 1.09001 * 109.47233 * 330.00701 * 1 2 3 27 27 H 1.09009 * 109.47290 * 185.02736 * 5 4 3 28 28 H 1.09001 * 109.47203 * 65.02511 * 5 4 3 29 29 H 1.08994 * 109.47173 * 30.28203 * 9 8 6 30 30 H 1.09005 * 109.47077 * 150.28374 * 9 8 6 31 31 H 0.96995 * 119.99689 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.46803 * 29.71536 * 18 8 6 33 33 H 1.09000 * 109.47214 * 149.72329 * 18 8 6 34 34 H 1.09000 * 109.47214 * 300.00285 * 19 18 8 35 35 H 1.09008 * 109.47142 * 59.99450 * 19 18 8 36 36 H 1.08002 * 126.04286 * 179.76000 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2379 2.9356 -1.1642 7 8 3.3235 2.6802 -1.9189 8 7 4.9914 4.0346 -1.3661 9 6 4.7106 4.9169 -2.5014 10 6 5.4977 4.4573 -3.7016 11 1 6.1430 3.5946 -3.6260 12 6 5.3948 5.1389 -4.8956 13 7 4.6094 6.1898 -4.9874 14 14 6.3710 4.5698 -6.3831 15 1 5.5667 3.5912 -7.1581 16 1 6.6909 5.7382 -7.2419 17 1 7.6315 3.9274 -5.9317 18 6 6.0957 4.3433 -0.4541 19 6 5.5834 5.2244 0.6870 20 6 6.6926 5.5341 1.6037 21 7 7.5503 5.7740 2.3083 22 6 3.9354 -0.4005 -0.0040 23 16 2.4857 -1.4020 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 5.5449 1.6352 -0.0895 28 1 4.4368 2.5834 0.9312 29 1 3.6456 4.8851 -2.7314 30 1 4.9973 5.9375 -2.2480 31 1 4.5374 6.6695 -5.8274 32 1 6.4988 3.4169 -0.0450 33 1 6.8789 4.8717 -0.9976 34 1 5.1801 6.1508 0.2779 35 1 4.8000 4.6960 1.2305 36 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057027446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:20 Heat of formation + Delta-G solvation = 10.284309 kcal Electronic energy + Delta-G solvation = -20537.265871 eV Core-core repulsion = 17340.623826 eV Total energy + Delta-G solvation = -3196.642045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25354 -40.03799 -37.93810 -36.60841 -34.90471 -33.91943 -32.12981 -30.91295 -29.19717 -28.32795 -25.29189 -24.92724 -23.48968 -20.68848 -20.06163 -18.89290 -18.43562 -18.18777 -17.86001 -17.00563 -16.35705 -16.08831 -15.83596 -15.64964 -15.52988 -14.74895 -14.54873 -14.38802 -14.26874 -13.93780 -13.63836 -13.51132 -13.40319 -13.20139 -13.01282 -12.92780 -12.82951 -12.66752 -12.54707 -12.22805 -12.14565 -11.81141 -11.64573 -10.58648 -10.56545 -10.43183 -10.21913 -9.54709 -9.40674 -8.16882 -6.29329 -0.14759 0.54223 0.83520 1.39426 1.41676 1.50583 1.71567 1.83965 1.86547 2.02137 2.36578 2.50315 3.13114 3.17778 3.25273 3.85271 4.00301 4.14247 4.16343 4.27274 4.41480 4.50146 4.57960 4.63460 4.69161 4.87369 4.88042 5.03986 5.09445 5.15283 5.31924 5.37269 5.63855 5.91655 6.14826 6.62619 6.77824 6.85009 6.97959 7.36534 7.60315 8.89855 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.005029 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.487604 B = 5565.888709 C = 7336.327781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.029 3.971 3 N -0.489 5.489 4 C 0.064 3.936 5 C -0.062 4.062 6 C 0.506 3.494 7 O -0.577 6.577 8 N -0.600 5.600 9 C 0.262 3.738 10 C -0.538 4.538 11 H 0.055 0.945 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.958 3.042 15 H -0.285 1.285 16 H -0.279 1.279 17 H -0.261 1.261 18 C 0.113 3.887 19 C -0.039 4.039 20 C 0.247 3.753 21 N -0.489 5.489 22 C -0.262 4.262 23 S 0.142 5.858 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.135 0.865 29 H -0.002 1.002 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -13.609 13.973 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.249 4.249 3 N -0.204 5.204 4 C -0.068 4.068 5 C -0.103 4.103 6 C 0.294 3.706 7 O -0.456 6.456 8 N -0.331 5.331 9 C 0.140 3.860 10 C -0.576 4.576 11 H 0.073 0.927 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.783 3.217 15 H -0.211 1.211 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.011 4.011 19 C -0.080 4.080 20 C -0.070 4.070 21 N -0.167 5.167 22 C -0.400 4.400 23 S 0.396 5.604 24 H 0.103 0.897 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.016 0.984 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.152 0.848 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.155 -13.809 14.510 20.147 hybrid contribution 0.544 0.913 -1.609 1.928 sum -1.611 -12.897 12.901 18.313 Atomic orbital electron populations 1.20559 0.83632 1.05186 1.04291 1.27566 1.03196 0.91086 1.03061 1.66010 1.05522 1.32983 1.15932 1.19911 0.90006 0.94408 1.02445 1.20462 0.98945 0.92738 0.98197 1.20964 0.81488 0.81647 0.86475 1.90690 1.32512 1.73206 1.49157 1.48067 1.32072 1.24978 1.28010 1.18747 0.95009 0.88969 0.83229 1.21768 1.26252 1.13000 0.96614 0.92716 1.25748 0.96534 0.95069 1.01602 1.70035 1.39327 1.20165 1.27247 0.85559 0.79147 0.77804 0.79174 1.21100 1.20387 1.18539 1.21549 0.88993 1.01076 0.89504 1.19834 0.91587 1.04000 0.92590 1.29100 0.93519 0.91652 0.92712 1.81235 1.12178 1.10786 1.12525 1.27127 1.04842 0.95242 1.12839 1.83512 0.96942 1.11713 1.68233 0.89676 0.87361 0.89623 0.84308 0.84737 0.98382 0.94892 0.92639 0.87014 0.89778 0.86479 0.84788 0.77891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.46 71.24 0.75 -0.67 16 2 C 0.03 0.75 7.39 88.52 0.65 1.41 16 3 N -0.49 -15.87 9.68 -179.41 -1.74 -17.61 16 4 C 0.06 1.82 5.64 41.52 0.23 2.06 16 5 C -0.06 -1.51 4.74 29.10 0.14 -1.38 16 6 C 0.51 19.05 7.64 87.66 0.67 19.72 16 7 O -0.58 -28.96 15.03 -3.04 -0.05 -29.00 16 8 N -0.60 -21.91 2.46 -826.14 -2.03 -23.93 16 9 C 0.26 12.94 5.16 85.63 0.44 13.39 16 10 C -0.54 -29.39 9.38 25.60 0.24 -29.15 16 11 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 12 C 0.01 0.52 5.46 84.65 0.46 0.99 16 13 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 14 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 C 0.11 2.73 5.17 86.38 0.45 3.18 16 19 C -0.04 -0.72 6.03 28.79 0.17 -0.55 16 20 C 0.25 5.38 15.43 89.44 1.38 6.76 16 21 N -0.49 -13.50 18.54 20.00 0.37 -13.13 16 22 C -0.26 -5.86 11.07 66.77 0.74 -5.12 16 23 S 0.14 2.87 23.18 -56.49 -1.31 1.56 16 24 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.14 2.40 7.29 -2.38 -0.02 2.38 16 28 H 0.13 2.41 7.22 -2.39 -0.02 2.40 16 29 H 0.00 -0.12 7.42 -2.39 -0.02 -0.13 16 30 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.11 1.90 6.43 -2.39 -0.02 1.89 16 33 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.13 1.86 7.25 -2.38 -0.02 1.84 16 36 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -80.84 335.10 4.99 -75.85 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.10 Total: 4.02 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.32 Total: 10.62 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -3.11 Total: -109.14 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.31 Total: 1.56 kcal Total: -80.84 4.99 -75.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.136 kcal (2) G-P(sol) polarization free energy of solvation -80.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds