Wall clock time and date at job start Tue Mar 31 2020 07:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47400 * 2 1 4 4 N 1.46501 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00308 * 269.99830 * 4 3 2 6 6 H 1.07998 * 119.99496 * 33.79514 * 5 4 3 7 7 C 1.38808 * 120.00474 * 213.79158 * 5 4 3 8 8 N 1.31622 * 119.99878 * 23.23610 * 7 5 4 9 9 Si 1.86796 * 120.00226 * 203.23305 * 7 5 4 10 10 H 1.48505 * 109.46805 * 90.00153 * 9 7 5 11 11 H 1.48500 * 109.47340 * 209.99728 * 9 7 5 12 12 H 1.48499 * 109.47073 * 330.00121 * 9 7 5 13 13 C 1.46497 * 119.99841 * 90.00678 * 4 3 2 14 14 C 1.50700 * 109.47032 * 270.54736 * 13 4 3 15 15 N 1.30930 * 126.40575 * 90.29547 * 14 13 4 16 16 C 1.35389 * 105.58390 * 180.08664 * 15 14 13 17 17 C 1.47727 * 126.45270 * 179.90244 * 16 15 14 18 18 C 1.34854 * 125.27131 * 179.72994 * 17 16 15 19 19 C 1.37828 * 114.72278 * 179.97438 * 18 17 16 20 20 C 1.33720 * 115.07134 * 359.97438 * 19 18 17 21 21 S 1.75868 * 109.74678 * 0.02562 * 20 19 18 22 22 N 1.31043 * 107.09870 * 359.64069 * 16 15 14 23 23 O 1.21296 * 110.04390 * 0.22912 * 22 16 15 24 24 H 1.09004 * 109.47080 * 300.00151 * 1 2 3 25 25 H 1.09007 * 109.47132 * 59.99437 * 1 2 3 26 26 H 1.08999 * 109.47840 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47080 * 239.99849 * 2 1 3 28 28 H 1.09000 * 109.46744 * 120.00535 * 2 1 3 29 29 H 1.08996 * 109.46766 * 60.00438 * 3 2 1 30 30 H 1.08998 * 109.47112 * 299.99878 * 3 2 1 31 31 H 0.96996 * 119.99851 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47407 * 150.55035 * 13 4 3 33 33 H 1.09002 * 109.47493 * 30.54541 * 13 4 3 34 34 H 1.07994 * 122.64241 * 359.97438 * 18 17 16 35 35 H 1.07996 * 122.46222 * 179.97438 * 19 18 17 36 36 H 1.08003 * 125.12664 * 180.26296 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1893 1.4424 1.1868 6 1 3.7857 0.9224 2.0430 7 6 5.4016 2.1109 1.2888 8 7 5.6835 3.0927 0.4588 9 14 6.6327 1.6171 2.6040 10 1 7.5385 0.5704 2.0660 11 1 7.4306 2.8034 3.0056 12 1 5.9079 1.0848 3.7857 13 6 4.2380 1.4422 -1.2678 14 6 4.4774 0.0214 -1.7095 15 7 3.6911 -0.6993 -2.4688 16 6 4.3067 -1.8985 -2.5953 17 6 3.8133 -3.0620 -3.3602 18 6 4.4497 -4.2455 -3.4744 19 6 3.7914 -5.1823 -4.2417 20 6 2.6250 -4.7764 -4.7543 21 16 2.3043 -3.1188 -4.2621 22 7 5.4254 -1.8309 -1.9162 23 8 5.5353 -0.7369 -1.4040 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5308 3.5595 0.5298 32 1 5.1948 1.9474 -1.1347 33 1 3.6536 1.9645 -2.0253 34 1 5.4003 -4.4437 -3.0018 35 1 4.1885 -6.1713 -4.4161 36 1 1.9757 -5.3774 -5.3737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058909330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:31 Heat of formation + Delta-G solvation = 116.467324 kcal Electronic energy + Delta-G solvation = -21134.690182 eV Core-core repulsion = 17942.652578 eV Total energy + Delta-G solvation = -3192.037604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.72763 -37.86759 -36.58972 -35.02275 -33.18691 -32.29826 -30.70363 -29.29745 -26.95166 -25.71582 -24.91517 -23.14827 -22.48807 -21.36700 -20.27395 -18.84840 -18.04634 -17.48118 -16.83304 -16.07676 -15.57423 -15.03831 -14.42733 -14.11266 -13.89729 -13.53857 -13.36138 -13.25395 -12.74897 -12.71105 -12.35404 -11.89640 -11.68576 -11.51981 -11.29205 -11.10445 -10.87697 -10.83679 -10.74781 -10.64202 -10.43774 -10.32571 -10.13964 -9.98894 -9.45240 -8.70758 -8.55013 -8.43574 -6.98400 -6.07586 -3.60840 0.58906 1.45976 1.93851 1.94264 2.49118 3.20486 3.31137 3.38577 3.41062 3.69242 3.97340 4.34187 4.75226 4.93617 5.10512 5.27590 5.29392 5.48063 5.66506 5.69277 5.75693 5.95368 5.99523 6.14423 6.20107 6.27291 6.33450 6.41159 6.44525 6.56450 6.59314 6.64088 6.89425 7.10210 7.14569 7.64102 8.20280 8.82883 8.87612 9.51081 10.03916 10.95211 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.005014 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.713890 B = 5582.837171 C = 6509.605481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.152 4.152 3 C 0.147 3.853 4 N -0.561 5.561 5 C -0.272 4.272 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.212 3.788 14 C 0.210 3.790 15 N -0.503 5.503 16 C 0.215 3.785 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.135 4.135 20 C -0.224 4.224 21 S 0.180 5.820 22 N -0.388 5.388 23 O 0.080 5.920 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -10.095 -8.730 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C 0.022 3.978 4 N -0.279 5.279 5 C -0.401 4.401 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.080 3.920 14 C -0.012 4.012 15 N -0.238 5.238 16 C -0.056 4.056 17 C -0.224 4.224 18 C -0.143 4.143 19 C -0.166 4.166 20 C -0.361 4.361 21 S 0.444 5.556 22 N -0.099 5.099 23 O 0.023 5.977 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.755 -9.600 -9.138 14.876 hybrid contribution 1.849 -1.411 1.005 2.534 sum -4.906 -11.011 -8.134 14.542 Atomic orbital electron populations 1.21673 0.96970 1.00442 1.01027 1.22165 0.94331 1.00696 1.01971 1.21046 0.83599 0.93442 0.99725 1.43852 1.00228 1.82463 1.01385 1.19138 1.03482 1.27709 0.89736 0.91330 1.25127 1.00236 0.94504 0.98324 1.69905 1.23844 1.18928 1.39401 0.86325 0.81368 0.78098 0.81335 1.20618 1.21377 1.20052 1.20147 1.03190 0.80668 0.87982 1.31832 0.80750 1.00577 0.88088 1.72061 1.29449 1.01600 1.20658 1.22681 0.90515 0.92935 0.99481 1.21352 1.00686 0.94504 1.05863 1.20327 1.01820 0.91542 1.00654 1.19988 0.95446 1.01050 1.00088 1.25969 1.02265 0.99888 1.08023 1.84426 1.17921 1.08679 1.44602 1.74915 1.19717 1.02058 1.13237 1.85321 1.41255 1.16787 1.54379 0.93274 0.93205 0.93863 0.91783 0.92949 0.92582 0.94054 0.92776 0.84961 0.90168 0.83737 0.83928 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.85 6.26 -26.73 -0.17 -3.01 16 3 C 0.15 2.96 5.71 -4.04 -0.02 2.94 16 4 N -0.56 -13.04 2.44 -174.61 -0.43 -13.47 16 5 C -0.27 -6.95 9.48 -15.06 -0.14 -7.09 16 6 H 0.07 1.78 7.93 -52.49 -0.42 1.37 16 7 C 0.02 0.50 4.94 -17.43 -0.09 0.42 16 8 N -0.88 -23.06 11.33 55.49 0.63 -22.43 16 9 Si 0.90 20.65 29.61 -169.99 -5.03 15.62 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.21 4.65 5.96 -5.20 -0.03 4.62 16 14 C 0.21 4.54 7.77 -12.97 -0.10 4.44 16 15 N -0.50 -10.37 10.23 -9.87 -0.10 -10.47 16 16 C 0.21 4.29 8.02 -156.04 -1.25 3.04 16 17 C -0.10 -1.74 6.44 -36.91 -0.24 -1.97 16 18 C -0.11 -1.55 10.05 -40.93 -0.41 -1.96 16 19 C -0.14 -1.50 10.16 -41.32 -0.42 -1.92 16 20 C -0.22 -2.36 11.23 29.15 0.33 -2.03 16 21 S 0.18 2.40 23.32 -107.50 -2.51 -0.11 16 22 N -0.39 -8.29 12.16 30.99 0.38 -7.91 16 23 O 0.08 1.81 11.29 17.98 0.20 2.02 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.29 6.38 -51.93 -0.33 0.96 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.04 0.78 7.90 -51.93 -0.41 0.37 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 32 H 0.13 3.18 5.32 -51.93 -0.28 2.91 16 33 H 0.08 1.61 7.90 -51.93 -0.41 1.20 16 34 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -27.59 326.14 -8.47 -36.06 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.36 Total: 0.11 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.18 Total: -4.33 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.48 Total: -54.28 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.20 Total: 2.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.51 Total: -0.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.59 -8.47 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.529 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds