Wall clock time and date at job start Tue Mar 31 2020 07:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47400 * 2 1 4 4 N 1.46501 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00308 * 269.99830 * 4 3 2 6 6 H 1.07998 * 119.99496 * 33.79514 * 5 4 3 7 7 C 1.38808 * 120.00474 * 213.79158 * 5 4 3 8 8 N 1.31622 * 119.99878 * 23.23610 * 7 5 4 9 9 Si 1.86796 * 120.00226 * 203.23305 * 7 5 4 10 10 H 1.48505 * 109.46805 * 90.00153 * 9 7 5 11 11 H 1.48500 * 109.47340 * 209.99728 * 9 7 5 12 12 H 1.48499 * 109.47073 * 330.00121 * 9 7 5 13 13 C 1.46497 * 119.99841 * 90.00678 * 4 3 2 14 14 C 1.50700 * 109.47032 * 270.54736 * 13 4 3 15 15 N 1.30930 * 126.40575 * 90.29547 * 14 13 4 16 16 C 1.35389 * 105.58390 * 180.08664 * 15 14 13 17 17 C 1.47727 * 126.45270 * 179.90244 * 16 15 14 18 18 C 1.34854 * 125.27131 * 179.72994 * 17 16 15 19 19 C 1.37828 * 114.72278 * 179.97438 * 18 17 16 20 20 C 1.33720 * 115.07134 * 359.97438 * 19 18 17 21 21 S 1.75868 * 109.74678 * 0.02562 * 20 19 18 22 22 N 1.31043 * 107.09870 * 359.64069 * 16 15 14 23 23 O 1.21296 * 110.04390 * 0.22912 * 22 16 15 24 24 H 1.09004 * 109.47080 * 300.00151 * 1 2 3 25 25 H 1.09007 * 109.47132 * 59.99437 * 1 2 3 26 26 H 1.08999 * 109.47840 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47080 * 239.99849 * 2 1 3 28 28 H 1.09000 * 109.46744 * 120.00535 * 2 1 3 29 29 H 1.08996 * 109.46766 * 60.00438 * 3 2 1 30 30 H 1.08998 * 109.47112 * 299.99878 * 3 2 1 31 31 H 0.96996 * 119.99851 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47407 * 150.55035 * 13 4 3 33 33 H 1.09002 * 109.47493 * 30.54541 * 13 4 3 34 34 H 1.07994 * 122.64241 * 359.97438 * 18 17 16 35 35 H 1.07996 * 122.46222 * 179.97438 * 19 18 17 36 36 H 1.08003 * 125.12664 * 180.26296 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1893 1.4424 1.1868 6 1 3.7857 0.9224 2.0430 7 6 5.4016 2.1109 1.2888 8 7 5.6835 3.0927 0.4588 9 14 6.6327 1.6171 2.6040 10 1 7.5385 0.5704 2.0660 11 1 7.4306 2.8034 3.0056 12 1 5.9079 1.0848 3.7857 13 6 4.2380 1.4422 -1.2678 14 6 4.4774 0.0214 -1.7095 15 7 3.6911 -0.6993 -2.4688 16 6 4.3067 -1.8985 -2.5953 17 6 3.8133 -3.0620 -3.3602 18 6 4.4497 -4.2455 -3.4744 19 6 3.7914 -5.1823 -4.2417 20 6 2.6250 -4.7764 -4.7543 21 16 2.3043 -3.1188 -4.2621 22 7 5.4254 -1.8309 -1.9162 23 8 5.5353 -0.7369 -1.4040 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5308 3.5595 0.5298 32 1 5.1948 1.9474 -1.1347 33 1 3.6536 1.9645 -2.0253 34 1 5.4003 -4.4437 -3.0018 35 1 4.1885 -6.1713 -4.4161 36 1 1.9757 -5.3774 -5.3737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058909330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:30 Heat of formation + Delta-G solvation = 101.481389 kcal Electronic energy + Delta-G solvation = -21135.340021 eV Core-core repulsion = 17942.652578 eV Total energy + Delta-G solvation = -3192.687443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.34691 -38.90620 -38.33104 -36.59039 -34.80240 -33.96085 -32.40310 -30.49018 -28.66117 -27.42742 -26.08461 -24.74639 -24.00305 -22.79083 -21.89220 -19.96458 -19.44406 -19.14541 -18.57830 -17.53861 -16.94384 -16.61210 -16.06858 -15.79825 -15.50501 -14.98325 -14.75648 -14.41319 -14.17172 -13.73329 -13.60409 -13.38555 -13.33659 -13.08930 -12.82124 -12.69766 -12.58197 -12.48333 -12.28794 -12.14624 -12.02450 -11.91402 -11.75588 -11.52495 -11.04330 -10.62578 -9.64163 -9.54191 -8.86139 -8.01889 -5.58408 -0.55591 0.36213 0.40902 0.97286 1.27315 1.44751 1.51251 1.55479 1.89841 2.03696 2.43754 2.56563 3.11969 3.26740 3.55321 4.05851 4.13877 4.21645 4.34658 4.41708 4.53822 4.56527 4.63894 4.73925 4.80641 4.93835 4.94743 5.02590 5.14033 5.21668 5.22240 5.33497 5.37661 5.38190 5.56977 5.62410 6.30241 6.96413 7.18115 7.62380 8.13197 8.98562 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.005014 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.713890 B = 5582.837171 C = 6509.605481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C 0.146 3.854 4 N -0.575 5.575 5 C -0.282 4.282 6 H 0.058 0.942 7 C -0.015 4.015 8 N -0.899 5.899 9 Si 0.948 3.052 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.218 3.782 14 C 0.206 3.794 15 N -0.501 5.501 16 C 0.226 3.774 17 C -0.166 4.166 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.186 4.186 21 S 0.172 5.828 22 N -0.409 5.409 23 O 0.051 5.949 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.262 0.738 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 -12.236 -10.115 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.294 5.294 5 C -0.411 4.411 6 H 0.075 0.925 7 C -0.214 4.214 8 N -0.542 5.542 9 Si 0.776 3.224 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.087 3.913 14 C -0.016 4.016 15 N -0.236 5.236 16 C -0.045 4.045 17 C -0.284 4.284 18 C -0.128 4.128 19 C -0.173 4.173 20 C -0.323 4.323 21 S 0.436 5.564 22 N -0.125 5.125 23 O -0.001 6.001 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.197 0.803 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.298 -11.709 -10.504 17.785 hybrid contribution 2.244 -0.923 1.288 2.747 sum -6.054 -12.632 -9.216 16.768 Atomic orbital electron populations 1.21605 0.93812 1.01629 1.02224 1.22018 0.97008 0.99077 1.00029 1.21152 0.81995 0.94472 1.00213 1.43998 1.01466 1.82896 1.01027 1.19200 1.04114 1.27407 0.90424 0.92452 1.25627 1.01235 0.94604 0.99968 1.69972 1.24069 1.19590 1.40533 0.85576 0.79587 0.77514 0.79713 1.21526 1.20895 1.19662 1.19955 1.02392 0.80834 0.88087 1.31643 0.80972 1.00502 0.88527 1.72053 1.29153 1.01998 1.20434 1.23282 0.89535 0.93493 0.98142 1.21521 1.03447 0.94488 1.08992 1.20632 1.01389 0.91266 0.99485 1.20280 0.95510 1.01953 0.99599 1.26507 1.01885 0.97922 1.06007 1.84406 1.16446 1.11341 1.44232 1.74882 1.21008 1.01711 1.14862 1.85279 1.41940 1.17476 1.55368 0.92209 0.91864 0.92697 0.93312 0.95239 0.92897 0.92559 0.92837 0.87007 0.88539 0.84117 0.80313 0.77287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.91 71.98 0.71 -3.11 16 2 C -0.14 -5.28 6.26 30.59 0.19 -5.09 16 3 C 0.15 5.88 5.71 86.38 0.49 6.38 16 4 N -0.57 -27.28 2.44 -706.35 -1.72 -29.00 16 5 C -0.28 -14.78 9.48 84.03 0.80 -13.98 16 6 H 0.06 3.08 7.93 -2.91 -0.02 3.05 16 7 C -0.01 -0.77 4.94 84.86 0.42 -0.35 16 8 N -0.90 -48.16 11.33 21.65 0.25 -47.91 16 9 Si 0.95 43.23 29.61 68.60 2.03 45.26 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.22 9.86 5.96 85.63 0.51 10.37 16 14 C 0.21 9.20 7.77 88.35 0.69 9.88 16 15 N -0.50 -21.00 10.23 -302.23 -3.09 -24.09 16 16 C 0.23 9.17 8.02 136.95 1.10 10.27 16 17 C -0.17 -5.36 6.44 24.00 0.15 -5.20 16 18 C -0.09 -2.44 10.05 21.39 0.22 -2.22 16 19 C -0.14 -2.62 10.16 21.15 0.21 -2.41 16 20 C -0.19 -3.06 11.23 66.79 0.75 -2.31 16 21 S 0.17 4.22 23.32 -56.49 -1.32 2.90 16 22 N -0.41 -18.01 12.16 -58.74 -0.71 -18.72 16 23 O 0.05 2.40 11.29 74.42 0.84 3.24 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.96 6.38 -2.39 -0.02 1.95 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 30 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 31 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.11 5.59 5.32 -2.38 -0.01 5.58 16 33 H 0.10 3.94 7.90 -2.39 -0.02 3.92 16 34 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -61.24 326.14 3.61 -57.63 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.09 Total: 8.46 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.24 Total: 2.24 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.28 Total: -119.73 kcal Atomic # 8 Polarization: 2.40 SS G_CDS: 0.84 Total: 3.24 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.32 Total: 2.90 kcal Total: -61.24 3.61 -57.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.109 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds