Wall clock time and date at job start Tue Mar 31 2020 07:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 N 1.46502 * 109.47029 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00245 * 272.14309 * 4 3 2 6 6 H 1.07996 * 120.00134 * 8.57118 * 5 4 3 7 7 C 1.38814 * 119.99991 * 188.56950 * 5 4 3 8 8 N 1.31623 * 120.00239 * 24.79767 * 7 5 4 9 9 Si 1.86795 * 120.00141 * 204.79551 * 7 5 4 10 10 H 1.48507 * 109.47200 * 89.99981 * 9 7 5 11 11 H 1.48508 * 109.47408 * 210.00024 * 9 7 5 12 12 H 1.48500 * 109.47127 * 330.00244 * 9 7 5 13 13 C 1.46505 * 119.99458 * 92.14560 * 4 3 2 14 14 C 1.50703 * 109.47060 * 89.99989 * 13 4 3 15 15 O 1.21279 * 120.00218 * 359.97438 * 14 13 4 16 16 N 1.34776 * 119.99450 * 179.97438 * 14 13 4 17 17 C 1.38806 * 119.99571 * 180.02562 * 16 14 13 18 18 S 1.70442 * 124.64818 * 359.74599 * 17 16 14 19 19 C 1.75462 * 92.52376 * 180.02562 * 18 17 16 20 20 C 1.32617 * 110.77772 * 359.97438 * 19 18 17 21 21 C 1.36987 * 124.64464 * 179.44751 * 17 16 14 22 22 C 1.43200 * 123.58224 * 359.97438 * 21 17 16 23 23 N 8.78220 * 128.84311 * 298.93021 * 2 1 3 24 24 H 1.09001 * 109.46899 * 299.99785 * 1 2 3 25 25 H 1.08999 * 109.47419 * 59.99703 * 1 2 3 26 26 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46899 * 240.00215 * 2 1 3 28 28 H 1.08999 * 109.47419 * 120.00297 * 2 1 3 29 29 H 1.09001 * 109.46985 * 60.00268 * 3 2 1 30 30 H 1.08991 * 109.47267 * 300.00132 * 3 2 1 31 31 H 0.96998 * 120.00574 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47197 * 329.99344 * 13 4 3 33 33 H 1.09001 * 109.46839 * 209.99823 * 13 4 3 34 34 H 0.96998 * 120.00748 * 359.71879 * 16 14 13 35 35 H 1.07996 * 124.61385 * 179.97438 * 19 18 17 36 36 H 1.08005 * 123.42535 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.3982 1.1859 6 1 3.6579 1.2243 2.1099 7 6 5.5657 1.5770 1.1998 8 7 6.1521 2.2482 0.2313 9 14 6.5860 0.8648 2.5930 10 1 7.0178 -0.5109 2.2374 11 1 7.7817 1.7167 2.8166 12 1 5.7697 0.8223 3.8328 13 6 4.2379 1.4897 -1.2670 14 6 4.4893 2.9258 -1.6487 15 8 4.0946 3.8216 -0.9327 16 7 5.1527 3.2145 -2.7858 17 6 5.3846 4.5372 -3.1371 18 16 4.8796 5.8851 -2.2243 19 6 5.5711 7.0187 -3.3714 20 6 6.1463 6.3763 -4.3790 21 6 6.0559 4.9380 -4.2619 22 6 6.6062 4.0291 -5.2220 23 7 7.0381 3.3089 -5.9866 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 7.1140 2.3728 0.2408 32 1 3.6492 1.0045 -2.0455 33 1 5.1903 0.9714 -1.1556 34 1 5.4719 2.4981 -3.3565 35 1 5.5335 8.0932 -3.2705 36 1 6.6363 6.8767 -5.2012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058911182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:18 Heat of formation + Delta-G solvation = 31.924843 kcal Electronic energy + Delta-G solvation = -21014.805208 eV Core-core repulsion = 17819.101567 eV Total energy + Delta-G solvation = -3195.703641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95350 -39.01771 -37.64636 -36.84036 -35.27830 -34.65028 -32.46376 -30.39976 -28.61959 -27.30160 -25.64329 -23.92964 -22.44273 -21.91442 -21.38475 -19.82317 -18.70099 -18.34363 -17.15334 -16.78831 -16.14005 -16.08834 -15.81399 -15.49429 -15.17622 -14.85198 -14.82502 -14.64156 -14.17056 -13.99079 -13.62168 -13.49803 -13.30766 -13.11125 -12.80710 -12.61917 -12.56277 -12.22336 -12.07829 -12.06244 -11.82101 -11.75190 -11.61256 -11.34622 -10.68815 -10.32062 -9.28259 -8.93890 -8.90906 -7.93341 -5.17173 -0.07169 0.46194 1.17598 1.24458 1.47655 1.51807 1.57476 1.73384 2.01175 2.23029 2.53110 2.60796 3.19722 3.26309 3.57570 4.15429 4.23637 4.28272 4.41824 4.46519 4.63503 4.76086 4.80175 4.92669 4.97275 5.13566 5.17911 5.24978 5.29525 5.38598 5.45691 5.50272 5.63702 5.68743 6.19826 6.36451 6.54358 7.08705 7.42025 7.83292 8.21218 9.14899 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.005380 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.209281 B = 5203.074615 C = 5935.465037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.149 3.851 4 N -0.586 5.586 5 C -0.247 4.247 6 H 0.074 0.926 7 C -0.043 4.043 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.287 1.287 11 H -0.305 1.305 12 H -0.277 1.277 13 C 0.167 3.833 14 C 0.521 3.479 15 O -0.516 6.516 16 N -0.639 5.639 17 C 0.080 3.920 18 S 0.281 5.719 19 C -0.282 4.282 20 C -0.071 4.071 21 C -0.166 4.166 22 C 0.302 3.698 23 N -0.475 5.475 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.247 0.753 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.415 0.585 35 H 0.199 0.801 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 4.873 -6.839 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.024 3.976 4 N -0.305 5.305 5 C -0.377 4.377 6 H 0.092 0.908 7 C -0.238 4.238 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.214 1.214 11 H -0.233 1.233 12 H -0.203 1.203 13 C 0.036 3.964 14 C 0.309 3.691 15 O -0.390 6.390 16 N -0.283 5.283 17 C -0.145 4.145 18 S 0.541 5.459 19 C -0.417 4.417 20 C -0.100 4.100 21 C -0.187 4.187 22 C -0.012 4.012 23 N -0.153 5.153 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.251 0.749 35 H 0.216 0.784 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.861 4.496 -6.039 9.541 hybrid contribution 1.914 -0.573 -0.464 2.051 sum -3.948 3.923 -6.502 8.559 Atomic orbital electron populations 1.21666 0.94454 1.01958 1.01808 1.21937 0.96108 0.97852 1.01213 1.20974 0.82155 0.95297 0.99220 1.44148 1.01304 1.83431 1.01593 1.19430 0.90009 1.40995 0.87234 0.90832 1.25191 0.98039 1.00271 1.00303 1.69911 1.09118 1.41237 1.36397 0.85400 0.78082 0.77839 0.79884 1.21446 1.23252 1.20254 1.20729 0.98592 0.89361 0.87736 1.23088 0.74034 0.95206 0.76775 1.90419 1.51139 1.48586 1.48826 1.43595 1.55677 1.03930 1.25079 1.22469 1.00559 0.93101 0.98322 1.84715 1.52291 0.89000 1.19927 1.26214 1.08957 1.05917 1.00653 1.20785 1.00590 0.88192 1.00472 1.16196 1.14453 0.92550 0.95525 1.25065 0.91794 0.92283 0.92034 1.81209 1.12592 1.09807 1.11717 0.92959 0.92301 0.91860 0.92588 0.93495 0.94628 0.93683 0.94340 0.90339 0.89062 0.74860 0.78423 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.65 16 2 C -0.13 -4.07 6.25 30.59 0.19 -3.88 16 3 C 0.15 5.60 5.67 86.38 0.49 6.08 16 4 N -0.59 -26.39 2.02 -706.34 -1.43 -27.82 16 5 C -0.25 -12.56 9.70 84.03 0.82 -11.75 16 6 H 0.07 3.76 7.94 -2.91 -0.02 3.73 16 7 C -0.04 -2.23 4.90 84.86 0.42 -1.81 16 8 N -0.92 -48.67 8.96 21.65 0.19 -48.48 16 9 Si 0.96 43.37 29.62 68.60 2.03 45.41 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 C 0.17 6.93 5.42 85.63 0.46 7.39 16 14 C 0.52 21.87 5.85 87.66 0.51 22.39 16 15 O -0.52 -24.60 13.59 -3.03 -0.04 -24.64 16 16 N -0.64 -22.83 5.37 -309.04 -1.66 -24.49 16 17 C 0.08 2.65 6.98 83.29 0.58 3.23 16 18 S 0.28 8.77 19.96 -56.49 -1.13 7.64 16 19 C -0.28 -6.22 11.10 66.66 0.74 -5.48 16 20 C -0.07 -1.62 10.35 22.73 0.24 -1.38 16 21 C -0.17 -4.83 5.88 -20.71 -0.12 -4.95 16 22 C 0.30 9.37 14.98 88.34 1.32 10.70 16 23 N -0.47 -16.03 18.54 19.00 0.35 -15.68 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 30 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 33 H 0.09 4.17 6.30 -2.39 -0.02 4.16 16 34 H 0.41 13.26 8.15 -92.71 -0.76 12.50 16 35 H 0.20 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -61.38 328.07 5.04 -56.35 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.35 Total: 13.82 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.36 Total: 17.90 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -2.54 Total: -116.47 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.04 Total: -24.64 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 8.77 SS G_CDS: -1.13 Total: 7.64 kcal Total: -61.38 5.04 -56.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058911182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.271 kcal (2) G-P(sol) polarization free energy of solvation -61.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds