Wall clock time and date at job start Tue Mar 31 2020 07:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47443 * 2 1 4 4 N 1.46497 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.36723 * 119.99840 * 269.99970 * 4 3 2 6 6 H 1.07993 * 120.00329 * 42.10736 * 5 4 3 7 7 C 1.39121 * 119.99581 * 222.11032 * 5 4 3 8 8 N 1.31326 * 120.00469 * 16.38141 * 7 5 4 9 9 Si 1.86807 * 119.99692 * 196.37795 * 7 5 4 10 10 H 1.48495 * 109.46952 * 89.99867 * 9 7 5 11 11 H 1.48504 * 109.46916 * 210.00212 * 9 7 5 12 12 H 1.48498 * 109.47102 * 330.00035 * 9 7 5 13 13 C 1.34780 * 120.00238 * 90.00189 * 4 3 2 14 14 O 1.21760 * 120.00017 * 175.35222 * 13 4 3 15 15 C 1.46194 * 119.99836 * 355.34464 * 13 4 3 16 16 C 1.35007 * 120.00106 * 184.30886 * 15 13 4 17 17 C 1.47097 * 120.00212 * 174.37837 * 16 15 13 18 18 C 1.39904 * 120.15806 * 5.03626 * 17 16 15 19 19 C 1.37829 * 119.83474 * 179.74586 * 18 17 16 20 20 C 1.38560 * 120.16054 * 0.52824 * 19 18 17 21 21 Cl 1.73600 * 119.83673 * 179.74161 * 20 19 18 22 22 C 1.38554 * 120.32429 * 359.72213 * 20 19 18 23 23 C 1.37828 * 120.15904 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47065 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46759 * 299.99999 * 1 2 3 26 26 H 1.09000 * 109.47363 * 59.99761 * 1 2 3 27 27 H 1.08997 * 109.46608 * 239.99789 * 2 1 3 28 28 H 1.09000 * 109.47363 * 120.00239 * 2 1 3 29 29 H 1.08995 * 109.47107 * 59.99817 * 3 2 1 30 30 H 1.09009 * 109.47199 * 300.00197 * 3 2 1 31 31 H 0.96999 * 120.00212 * 184.89366 * 8 7 5 32 32 H 1.08007 * 119.99809 * 4.03571 * 15 13 4 33 33 H 1.08005 * 119.99793 * 354.38061 * 16 15 13 34 34 H 1.07999 * 120.08406 * 359.97396 * 18 17 16 35 35 H 1.08003 * 119.91909 * 180.22421 * 19 18 17 36 36 H 1.08002 * 119.92209 * 179.97438 * 22 20 19 37 37 H 1.08002 * 120.07907 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1891 1.4422 1.1832 6 1 3.8586 0.8150 1.9978 7 6 5.3111 2.2500 1.3383 8 7 5.5321 3.2352 0.4985 9 14 6.5032 1.9334 2.7412 10 1 7.5546 0.9854 2.2928 11 1 7.1337 3.2132 3.1534 12 1 5.7690 1.3499 3.8925 13 6 4.1785 1.4425 -1.1681 14 8 5.3931 1.5279 -1.1703 15 6 3.4506 1.3400 -2.4318 16 6 4.1285 1.2525 -3.5961 17 6 3.4021 1.0253 -4.8548 18 6 2.0032 1.0043 -4.8652 19 6 1.3293 0.7960 -6.0493 20 6 2.0339 0.5968 -7.2256 21 17 1.1766 0.3285 -8.7111 22 6 3.4194 0.6110 -7.2221 23 6 4.1067 0.8233 -6.0465 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9562 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.3494 3.7535 0.5632 32 1 2.3706 1.3299 -2.4336 33 1 5.2042 1.3494 -3.6033 34 1 1.4528 1.1546 -3.9482 35 1 0.2494 0.7831 -6.0594 36 1 3.9620 0.4546 -8.1427 37 1 5.1867 0.8338 -6.0452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060556266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:36 Heat of formation + Delta-G solvation = -12.154471 kcal Electronic energy + Delta-G solvation = -20484.853334 eV Core-core repulsion = 17252.901813 eV Total energy + Delta-G solvation = -3231.951521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54356 -39.98258 -37.51040 -36.72484 -35.09808 -34.17288 -32.82835 -32.12521 -30.34491 -27.61058 -26.47820 -24.68931 -23.73449 -22.52912 -21.95182 -20.00215 -18.85918 -18.08973 -17.58607 -16.85717 -16.43624 -16.09504 -15.73533 -15.31133 -15.28515 -14.86411 -14.53278 -14.47341 -14.39389 -13.87227 -13.49268 -13.23524 -12.95527 -12.83383 -12.73740 -12.65597 -12.56760 -12.47869 -12.24232 -12.11734 -11.95331 -11.70345 -11.49803 -10.92418 -10.81661 -10.05602 -10.04326 -9.14309 -9.04070 -8.14951 -5.98789 -0.43280 0.33775 1.08967 1.13883 1.39107 1.45627 1.51142 2.35867 2.68783 3.00302 3.16010 3.33123 3.73791 3.81072 3.92240 4.11448 4.20583 4.27646 4.32758 4.36051 4.50131 4.65285 4.71046 4.79634 4.85402 4.97830 5.10438 5.14004 5.20591 5.23025 5.26962 5.36044 5.46275 5.55713 5.59375 5.69485 5.78147 6.20083 7.01857 7.23667 7.68299 8.39173 8.87526 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.003573 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.438992 B = 7834.554589 C = 8894.605547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.103 3.897 4 N -0.459 5.459 5 C -0.359 4.359 6 H 0.084 0.916 7 C 0.012 3.988 8 N -0.855 5.855 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.251 1.251 13 C 0.469 3.531 14 O -0.588 6.588 15 C -0.169 4.169 16 C -0.071 4.071 17 C -0.060 4.060 18 C -0.101 4.101 19 C -0.107 4.107 20 C -0.043 4.043 21 Cl -0.067 7.067 22 C -0.109 4.109 23 C -0.099 4.099 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.258 0.742 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 -5.601 -13.697 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.178 5.178 5 C -0.487 4.487 6 H 0.102 0.898 7 C -0.195 4.195 8 N -0.490 5.490 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.208 1.208 12 H -0.175 1.175 13 C 0.260 3.740 14 O -0.472 6.472 15 C -0.190 4.190 16 C -0.092 4.092 17 C -0.060 4.060 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.069 4.069 21 Cl -0.038 7.038 22 C -0.128 4.128 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.480 -5.376 -13.778 18.723 hybrid contribution 1.049 0.143 0.704 1.271 sum -10.431 -5.233 -13.074 17.525 Atomic orbital electron populations 1.21666 0.92942 1.02491 1.02607 1.21869 0.97523 0.96155 1.01443 1.21792 0.80865 0.97366 1.01965 1.43449 1.05028 1.64774 1.04579 1.19381 1.12893 1.23518 0.92858 0.89803 1.26121 1.00893 0.93048 0.99484 1.69995 1.24413 1.16565 1.38047 0.85307 0.78853 0.77301 0.79067 1.21680 1.20844 1.17491 1.18682 0.87415 0.82727 0.85149 1.90604 1.16239 1.52734 1.87596 1.23326 1.00750 1.02767 0.92167 1.22112 0.99335 0.96646 0.91088 1.19182 0.93887 1.00266 0.92695 1.21551 0.92901 0.98579 0.98921 1.21187 1.01534 0.99623 0.90197 1.21223 0.92851 1.04880 0.87987 1.98366 1.77166 1.94801 1.33517 1.21166 0.92147 1.00120 0.99355 1.21499 1.01025 0.98305 0.90893 0.91587 0.92396 0.91278 0.92541 0.93471 0.91659 0.90714 0.93302 0.83578 0.87350 0.83593 0.82605 0.82840 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.91 71.98 0.71 -2.26 16 2 C -0.13 -4.00 6.26 30.59 0.19 -3.81 16 3 C 0.10 3.86 5.00 86.38 0.43 4.29 16 4 N -0.46 -23.21 2.51 -640.62 -1.61 -24.82 16 5 C -0.36 -20.06 9.27 84.14 0.78 -19.28 16 6 H 0.08 4.46 7.89 -2.91 -0.02 4.44 16 7 C 0.01 0.67 4.46 84.98 0.38 1.05 16 8 N -0.86 -53.11 11.20 21.69 0.24 -52.87 16 9 Si 0.97 45.87 29.59 68.60 2.03 47.89 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 13 C 0.47 24.59 6.97 86.31 0.60 25.19 16 14 O -0.59 -36.68 13.43 -4.54 -0.06 -36.74 16 15 C -0.17 -6.66 8.47 23.59 0.20 -6.46 16 16 C -0.07 -2.55 9.46 23.85 0.23 -2.32 16 17 C -0.06 -1.65 5.87 -20.15 -0.12 -1.77 16 18 C -0.10 -2.33 9.41 22.58 0.21 -2.11 16 19 C -0.11 -2.08 9.81 22.25 0.22 -1.86 16 20 C -0.04 -0.85 6.33 22.42 0.14 -0.71 16 21 Cl -0.07 -1.18 28.95 -2.72 -0.08 -1.26 16 22 C -0.11 -2.17 9.81 22.25 0.22 -1.95 16 23 C -0.10 -2.32 9.80 22.58 0.22 -2.10 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.73 8.01 -2.39 -0.02 1.72 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 30 H 0.07 2.45 6.25 -2.38 -0.01 2.44 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.15 4.58 4.31 -2.91 -0.01 4.57 16 33 H 0.11 4.38 7.53 -2.91 -0.02 4.36 16 34 H 0.15 2.96 6.19 -2.91 -0.02 2.94 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -73.44 331.09 6.01 -67.42 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.07 Total: 14.47 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.42 Total: -14.09 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.37 Total: -77.69 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.06 Total: -36.74 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -73.44 6.01 -67.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.268 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds