Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46881 * 193.95745 * 3 2 1 5 5 N 1.46505 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99974 * 270.00396 * 5 4 3 7 7 C 1.50702 * 109.46974 * 269.99585 * 6 5 4 8 8 H 1.08001 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99695 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00091 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47108 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47019 * 120.00009 * 11 9 7 14 14 H 1.48499 * 109.46892 * 240.00110 * 11 9 7 15 15 C 1.34782 * 119.99642 * 90.00018 * 5 4 3 16 16 O 1.21281 * 119.99390 * 180.02562 * 15 5 4 17 17 C 1.50693 * 120.00183 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47298 * 180.02562 * 17 15 5 19 19 C 1.50693 * 109.47298 * 179.97438 * 18 17 15 20 20 N 1.29027 * 124.91534 * 90.30653 * 19 18 17 21 21 C 1.31784 * 117.12400 * 180.22644 * 20 19 18 22 22 C 1.33641 * 114.49781 * 359.48088 * 21 20 19 23 23 S 1.70983 * 124.91700 * 269.99604 * 19 18 17 24 24 H 1.09003 * 109.47215 * 73.95858 * 3 2 1 25 25 H 1.08998 * 109.47057 * 313.95582 * 3 2 1 26 26 H 1.08996 * 109.47394 * 60.00295 * 4 3 2 27 27 H 1.08998 * 109.47142 * 299.99785 * 4 3 2 28 28 H 1.08998 * 109.47657 * 29.99564 * 6 5 4 29 29 H 1.09003 * 109.47273 * 150.00371 * 6 5 4 30 30 H 0.97009 * 119.99524 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47519 * 60.00281 * 17 15 5 32 32 H 1.08998 * 109.47153 * 299.99900 * 17 15 5 33 33 H 1.09003 * 109.47062 * 59.99557 * 18 17 15 34 34 H 1.09006 * 109.46638 * 300.00196 * 18 17 15 35 35 H 1.08002 * 122.75368 * 179.75456 * 21 20 19 36 36 H 1.08001 * 126.03830 * 180.26907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4008 0.3479 5 7 4.5823 1.4013 0.3485 6 6 5.3144 1.0957 1.5801 7 6 5.5648 2.3698 2.3449 8 1 5.2134 3.3129 1.9530 9 6 6.2426 2.3317 3.5450 10 7 6.6710 1.1834 4.0220 11 14 6.5524 3.9110 4.4934 12 1 5.9744 5.0577 3.7477 13 1 5.9149 3.8181 5.8314 14 1 8.0148 4.1127 4.6548 15 6 5.2565 1.6830 -0.7840 16 8 6.4694 1.6830 -0.7836 17 6 4.5034 1.9978 -2.0507 18 6 5.4980 2.2778 -3.1792 19 6 4.7449 2.5921 -4.4461 20 7 4.3807 3.7736 -4.8149 21 6 3.7233 3.8719 -5.9529 22 6 3.5314 2.7097 -6.5841 23 16 4.2559 1.4354 -5.6065 24 1 2.9715 -0.2832 -0.9877 25 1 2.9716 -0.7125 0.7398 26 1 2.7539 1.6846 1.3356 27 1 2.7536 2.1139 -0.3919 28 1 4.7254 0.4137 2.1933 29 1 6.2672 0.6289 1.3301 30 1 7.1482 1.1566 4.8662 31 1 3.8768 2.8755 -1.8923 32 1 3.8769 1.1481 -2.3217 33 1 6.1244 1.3999 -3.3376 34 1 6.1249 3.1275 -2.9084 35 1 3.3725 4.8149 -6.3455 36 1 3.0221 2.5752 -7.5270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067230296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = 28.832654 kcal Electronic energy + Delta-G solvation = -20279.425571 eV Core-core repulsion = 17083.587842 eV Total energy + Delta-G solvation = -3195.837728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89344 -39.25695 -36.88971 -35.32588 -33.89282 -32.81536 -30.85673 -29.88846 -27.65867 -25.91702 -24.04910 -23.62399 -22.12223 -20.02253 -18.52345 -18.15832 -17.60507 -16.53485 -16.47254 -15.67786 -15.58024 -15.20343 -14.71571 -14.63450 -14.15605 -14.03528 -13.61187 -13.49134 -12.83580 -12.71908 -12.44284 -12.40051 -12.11121 -11.92599 -11.72273 -11.66925 -11.29337 -11.16621 -10.96271 -10.79213 -10.63256 -10.19728 -9.76618 -9.69675 -9.57961 -9.19738 -8.93218 -8.48034 -7.87080 -6.09587 -4.13984 0.53423 1.19604 1.58773 2.67531 2.72354 2.80610 3.25507 3.28388 3.36837 3.40838 3.60911 3.98131 4.25001 4.42122 4.80557 4.96223 4.98556 5.02867 5.06763 5.17307 5.24501 5.29118 5.31310 5.43826 5.56997 5.80001 5.86375 6.00860 6.08231 6.11221 6.91253 7.34115 7.41317 7.56798 7.60100 7.86766 8.16467 8.22994 8.81387 8.96106 9.51829 10.98565 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004086 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.089296 B = 6851.724553 C = 8065.730925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.510 3.490 16 O -0.532 6.532 17 C -0.137 4.137 18 C -0.031 4.031 19 C 0.063 3.937 20 N -0.475 5.475 21 C 0.041 3.959 22 C -0.268 4.268 23 S 0.116 5.884 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.729 -1.250 -18.079 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.179 4.179 18 C -0.072 4.072 19 C -0.214 4.214 20 N -0.190 5.190 21 C -0.111 4.111 22 C -0.408 4.408 23 S 0.369 5.631 24 H 0.124 0.876 25 H 0.136 0.864 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.191 0.809 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.426 -1.960 -17.668 19.265 hybrid contribution 0.126 1.700 0.171 1.713 sum -7.300 -0.261 -17.497 18.960 Atomic orbital electron populations 1.81206 1.13067 1.08699 1.09309 1.29108 0.95114 0.93085 0.92813 1.19905 0.81343 1.02240 1.05725 1.21315 0.82229 0.93281 1.04159 1.48205 1.04841 1.68100 1.11589 1.19366 0.92635 0.96630 0.78852 1.21464 1.36616 0.93773 1.04865 0.92277 1.24913 0.95295 0.96379 0.97380 1.69930 1.38295 1.24526 1.20506 0.86469 0.78111 0.83451 0.79567 1.19760 1.20999 1.20878 1.20181 0.88049 0.77727 0.84405 1.90703 1.13730 1.51346 1.85099 1.21743 0.99035 1.03693 0.93439 1.20058 0.96038 1.04786 0.86351 1.27294 1.01859 0.90748 1.01546 1.66323 1.13370 1.23815 1.15455 1.21847 0.98944 0.99219 0.91043 1.27066 1.11203 0.95588 1.06904 1.84083 1.50436 1.13663 1.14889 0.87578 0.86437 0.88731 0.90569 0.94710 0.93474 0.92733 0.88571 0.89343 0.88626 0.87643 0.80874 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.51 18.54 42.15 0.78 -5.73 16 2 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.12 1.51 5.17 -4.04 -0.02 1.49 16 5 N -0.60 -10.54 2.46 -175.06 -0.43 -10.97 16 6 C 0.24 5.65 5.16 -5.19 -0.03 5.63 16 7 C -0.53 -13.97 9.39 -34.44 -0.32 -14.29 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.51 8.91 7.67 -10.99 -0.08 8.82 16 16 O -0.53 -11.70 15.56 5.56 0.09 -11.61 16 17 C -0.14 -1.70 4.23 -27.89 -0.12 -1.82 16 18 C -0.03 -0.39 5.09 -27.89 -0.14 -0.53 16 19 C 0.06 0.74 6.64 -13.46 -0.09 0.65 16 20 N -0.48 -6.05 10.54 -11.86 -0.13 -6.17 16 21 C 0.04 0.41 11.35 -19.18 -0.22 0.19 16 22 C -0.27 -2.27 11.37 29.12 0.33 -1.94 16 23 S 0.12 1.06 23.18 -107.50 -2.49 -1.43 16 24 H 0.11 0.83 7.22 -51.93 -0.38 0.46 16 25 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 28 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.10 1.15 7.40 -51.93 -0.38 0.77 16 32 H 0.09 0.84 7.19 -51.93 -0.37 0.47 16 33 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 35 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -33.15 335.80 -7.04 -40.19 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.35 Total: -2.30 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.29 Total: 1.38 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.96 Total: -47.42 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.15 -7.04 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.023 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds