Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46881 * 193.95745 * 3 2 1 5 5 N 1.46505 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99974 * 270.00396 * 5 4 3 7 7 C 1.50702 * 109.46974 * 269.99585 * 6 5 4 8 8 H 1.08001 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99695 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00091 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47108 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47019 * 120.00009 * 11 9 7 14 14 H 1.48499 * 109.46892 * 240.00110 * 11 9 7 15 15 C 1.34782 * 119.99642 * 90.00018 * 5 4 3 16 16 O 1.21281 * 119.99390 * 180.02562 * 15 5 4 17 17 C 1.50693 * 120.00183 * 0.02562 * 15 5 4 18 18 C 1.53002 * 109.47298 * 180.02562 * 17 15 5 19 19 C 1.50693 * 109.47298 * 179.97438 * 18 17 15 20 20 N 1.29027 * 124.91534 * 90.30653 * 19 18 17 21 21 C 1.31784 * 117.12400 * 180.22644 * 20 19 18 22 22 C 1.33641 * 114.49781 * 359.48088 * 21 20 19 23 23 S 1.70983 * 124.91700 * 269.99604 * 19 18 17 24 24 H 1.09003 * 109.47215 * 73.95858 * 3 2 1 25 25 H 1.08998 * 109.47057 * 313.95582 * 3 2 1 26 26 H 1.08996 * 109.47394 * 60.00295 * 4 3 2 27 27 H 1.08998 * 109.47142 * 299.99785 * 4 3 2 28 28 H 1.08998 * 109.47657 * 29.99564 * 6 5 4 29 29 H 1.09003 * 109.47273 * 150.00371 * 6 5 4 30 30 H 0.97009 * 119.99524 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47519 * 60.00281 * 17 15 5 32 32 H 1.08998 * 109.47153 * 299.99900 * 17 15 5 33 33 H 1.09003 * 109.47062 * 59.99557 * 18 17 15 34 34 H 1.09006 * 109.46638 * 300.00196 * 18 17 15 35 35 H 1.08002 * 122.75368 * 179.75456 * 21 20 19 36 36 H 1.08001 * 126.03830 * 180.26907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4008 0.3479 5 7 4.5823 1.4013 0.3485 6 6 5.3144 1.0957 1.5801 7 6 5.5648 2.3698 2.3449 8 1 5.2134 3.3129 1.9530 9 6 6.2426 2.3317 3.5450 10 7 6.6710 1.1834 4.0220 11 14 6.5524 3.9110 4.4934 12 1 5.9744 5.0577 3.7477 13 1 5.9149 3.8181 5.8314 14 1 8.0148 4.1127 4.6548 15 6 5.2565 1.6830 -0.7840 16 8 6.4694 1.6830 -0.7836 17 6 4.5034 1.9978 -2.0507 18 6 5.4980 2.2778 -3.1792 19 6 4.7449 2.5921 -4.4461 20 7 4.3807 3.7736 -4.8149 21 6 3.7233 3.8719 -5.9529 22 6 3.5314 2.7097 -6.5841 23 16 4.2559 1.4354 -5.6065 24 1 2.9715 -0.2832 -0.9877 25 1 2.9716 -0.7125 0.7398 26 1 2.7539 1.6846 1.3356 27 1 2.7536 2.1139 -0.3919 28 1 4.7254 0.4137 2.1933 29 1 6.2672 0.6289 1.3301 30 1 7.1482 1.1566 4.8662 31 1 3.8768 2.8755 -1.8923 32 1 3.8769 1.1481 -2.3217 33 1 6.1244 1.3999 -3.3376 34 1 6.1249 3.1275 -2.9084 35 1 3.3725 4.8149 -6.3455 36 1 3.0221 2.5752 -7.5270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067230296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = 7.806695 kcal Electronic energy + Delta-G solvation = -20280.337325 eV Core-core repulsion = 17083.587842 eV Total energy + Delta-G solvation = -3196.749482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92834 -40.39894 -37.98830 -36.70385 -35.09147 -34.57285 -32.13430 -30.80484 -29.23074 -27.08272 -25.29393 -24.88893 -23.44624 -20.79929 -19.87184 -19.00751 -18.73281 -18.30956 -17.74295 -17.10017 -16.45088 -16.34082 -16.17631 -15.67112 -15.33095 -15.11852 -14.71842 -14.48839 -14.31222 -13.81786 -13.63657 -13.57405 -13.49172 -13.25926 -12.93005 -12.88792 -12.66296 -12.48099 -12.36117 -12.20405 -12.12409 -11.75712 -11.62086 -10.62421 -10.57163 -10.51775 -10.30718 -9.76345 -9.44884 -8.16511 -6.28147 -0.20891 0.47529 0.86661 1.39872 1.42837 1.52994 1.70094 1.86082 1.89400 1.93409 2.32469 2.46632 3.07340 3.15640 3.31228 3.77080 4.02212 4.07762 4.12617 4.19236 4.32641 4.45918 4.55223 4.62196 4.63253 4.86435 4.92290 5.05975 5.11405 5.17522 5.29113 5.37823 5.63878 5.90351 6.15683 6.62428 6.76182 6.84419 6.85885 7.36251 7.53608 8.90205 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004086 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.089296 B = 6851.724553 C = 8065.730925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.259 3.741 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.506 3.494 16 O -0.586 6.586 17 C -0.121 4.121 18 C -0.027 4.027 19 C 0.037 3.963 20 N -0.506 5.506 21 C 0.018 3.982 22 C -0.254 4.254 23 S 0.154 5.846 24 H 0.140 0.860 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.035 0.965 29 H 0.007 0.993 30 H 0.265 0.735 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 -1.210 -19.956 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.137 3.863 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.199 1.199 14 H -0.211 1.211 15 C 0.295 3.705 16 O -0.466 6.466 17 C -0.162 4.162 18 C -0.068 4.068 19 C -0.240 4.240 20 N -0.222 5.222 21 C -0.133 4.133 22 C -0.393 4.393 23 S 0.407 5.593 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.209 0.791 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.111 -1.918 -19.555 21.659 hybrid contribution 0.640 1.671 0.662 1.908 sum -8.471 -0.247 -18.893 20.707 Atomic orbital electron populations 1.81250 1.14469 1.10086 1.11053 1.29181 0.94989 0.91702 0.91291 1.19857 0.80003 1.00308 1.07768 1.21514 0.79144 0.95907 1.04661 1.48079 1.06704 1.67934 1.10040 1.18822 0.91639 0.95046 0.80747 1.21802 1.36215 0.94639 1.05205 0.92994 1.25687 0.95286 0.99200 0.98509 1.70025 1.39156 1.26289 1.21013 0.85548 0.77718 0.80002 0.78626 1.19410 1.19890 1.21061 1.21063 0.87675 0.76207 0.85591 1.90678 1.16377 1.53508 1.86061 1.21685 0.98690 1.05507 0.90347 1.19889 0.95941 1.03781 0.87188 1.27009 1.03171 0.91674 1.02117 1.66299 1.14095 1.24848 1.16958 1.22181 0.99544 1.00757 0.90780 1.27507 1.09610 0.94739 1.07414 1.83921 1.49343 1.12453 1.13540 0.84262 0.85983 0.89936 0.87854 0.94664 0.97462 0.92600 0.87617 0.85440 0.88425 0.90427 0.79066 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.47 18.54 20.01 0.37 -13.10 16 2 C 0.25 5.23 15.43 89.44 1.38 6.61 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.70 5.17 86.38 0.45 3.14 16 5 N -0.60 -20.87 2.46 -826.16 -2.03 -22.90 16 6 C 0.26 12.28 5.16 85.63 0.44 12.72 16 7 C -0.54 -29.07 9.39 25.60 0.24 -28.83 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.01 0.68 5.46 84.65 0.46 1.14 16 10 N -0.92 -53.33 13.29 21.45 0.28 -53.04 16 11 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 C 0.51 17.55 7.67 87.65 0.67 18.22 16 16 O -0.59 -26.65 15.56 -3.03 -0.05 -26.69 16 17 C -0.12 -2.78 4.23 29.85 0.13 -2.65 16 18 C -0.03 -0.65 5.09 29.85 0.15 -0.50 16 19 C 0.04 0.81 6.64 88.52 0.59 1.40 16 20 N -0.51 -12.21 10.54 -191.45 -2.02 -14.22 16 21 C 0.02 0.31 11.35 83.66 0.95 1.26 16 22 C -0.25 -3.43 11.37 66.78 0.76 -2.67 16 23 S 0.15 2.37 23.18 -56.49 -1.31 1.06 16 24 H 0.14 1.57 7.22 -2.39 -0.02 1.55 16 25 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.21 8.07 -2.39 -0.02 2.20 16 27 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.04 1.65 8.07 -2.39 -0.02 1.64 16 29 H 0.01 0.40 7.42 -2.39 -0.02 0.38 16 30 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.11 2.29 7.40 -2.39 -0.02 2.27 16 32 H 0.13 1.91 7.19 -2.39 -0.02 1.90 16 33 H 0.10 2.26 8.10 -2.39 -0.02 2.24 16 34 H 0.08 2.28 8.10 -2.38 -0.02 2.26 16 35 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -74.80 335.80 4.77 -70.04 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.10 Total: 3.69 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.39 Total: 9.36 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.39 Total: -103.26 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.31 Total: 1.06 kcal Total: -74.80 4.77 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.843 kcal (2) G-P(sol) polarization free energy of solvation -74.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds