Wall clock time and date at job start Tue Mar 31 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29885 * 125.73467 * 2 1 4 4 N 1.39778 * 109.43164 * 180.16493 * 3 2 1 5 5 C 1.46491 * 125.94680 * 179.80403 * 4 3 2 6 6 C 1.36732 * 108.09806 * 359.55095 * 4 3 2 7 7 S 1.75884 * 142.80262 * 180.29127 * 6 4 3 8 8 C 1.75578 * 91.47106 * 179.97438 * 7 6 4 9 9 C 1.46591 * 124.78923 * 179.97438 * 8 7 6 10 10 O 1.21703 * 120.00256 * 171.08493 * 9 8 7 11 11 N 1.34776 * 119.99920 * 351.08231 * 9 8 7 12 12 C 1.46500 * 119.99790 * 359.81278 * 11 9 8 13 13 C 1.46502 * 120.00120 * 179.80278 * 11 9 8 14 14 C 1.50704 * 109.46601 * 90.00592 * 13 11 9 15 15 H 1.07995 * 120.00188 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99458 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00319 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99635 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47203 * 59.99893 * 18 16 14 20 20 H 1.48498 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46978 * 299.99715 * 18 16 14 22 22 C 1.34114 * 110.42610 * 359.97438 * 8 7 6 23 23 C 1.38522 * 107.41851 * 0.25833 * 6 4 3 24 24 H 1.09001 * 109.47412 * 270.33037 * 1 2 3 25 25 H 1.08998 * 109.47426 * 30.32637 * 1 2 3 26 26 H 1.08992 * 109.47477 * 150.32921 * 1 2 3 27 27 H 1.08997 * 109.47515 * 269.69760 * 5 4 3 28 28 H 1.09007 * 109.47281 * 29.70291 * 5 4 3 29 29 H 1.09003 * 109.46772 * 149.69504 * 5 4 3 30 30 H 1.08997 * 109.47687 * 83.39614 * 12 11 9 31 31 H 1.09012 * 109.47028 * 203.39621 * 12 11 9 32 32 H 1.08999 * 109.47024 * 323.38629 * 12 11 9 33 33 H 1.09000 * 109.47231 * 209.99970 * 13 11 9 34 34 H 1.08995 * 109.46865 * 330.00626 * 13 11 9 35 35 H 0.96998 * 119.99609 * 180.02562 * 17 16 14 36 36 H 1.08003 * 122.34701 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0543 0.0000 4 7 3.6071 0.6619 -0.0038 5 6 4.7654 1.5588 -0.0090 6 6 3.6500 -0.7047 0.0040 7 16 4.7567 -2.0717 0.0124 8 6 3.4209 -3.2111 0.0189 9 6 3.5659 -4.6698 0.0271 10 8 2.5900 -5.3774 0.1945 11 7 4.7799 -5.2274 -0.1508 12 6 5.9540 -4.3756 -0.3565 13 6 4.9256 -6.6851 -0.1383 14 6 4.7543 -7.2189 -1.5372 15 1 4.5564 -6.5403 -2.3537 16 6 4.8493 -8.5738 -1.7744 17 7 5.0898 -9.4002 -0.7800 18 14 4.6364 -9.2356 -3.5082 19 1 5.6698 -8.6428 -4.3948 20 1 4.7828 -10.7133 -3.4955 21 1 3.2865 -8.8769 -4.0127 22 6 2.2492 -2.5587 0.0153 23 6 2.3419 -1.1606 0.0066 24 1 -0.3634 0.0059 1.0276 25 1 -0.3634 0.8870 -0.5189 26 1 -0.3634 -0.8928 -0.5087 27 1 5.0527 1.7753 -1.0379 28 1 4.5079 2.4879 0.4996 29 1 5.5975 1.0805 0.5076 30 1 6.3360 -4.0439 0.6090 31 1 6.7264 -4.9413 -0.8779 32 1 5.6735 -3.5082 -0.9539 33 1 5.9163 -6.9481 0.2321 34 1 4.1670 -7.1204 0.5121 35 1 5.1570 -10.3533 -0.9470 36 1 1.3004 -3.0748 0.0187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:50 Heat of formation + Delta-G solvation = 71.648096 kcal Electronic energy + Delta-G solvation = -20611.735678 eV Core-core repulsion = 17417.754567 eV Total energy + Delta-G solvation = -3193.981111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31627 -39.03334 -35.67146 -34.84232 -33.80049 -32.66537 -29.85528 -29.30771 -27.76596 -26.33503 -25.51465 -23.77681 -22.66737 -21.13893 -19.87104 -18.33444 -17.65468 -16.56710 -16.37247 -15.91914 -15.51508 -15.43758 -14.64964 -14.50381 -14.00890 -13.79163 -13.48048 -13.32476 -12.94867 -12.81129 -12.59880 -12.55065 -12.45809 -12.17349 -11.74713 -11.36561 -11.25890 -10.98192 -10.94610 -10.65796 -10.45981 -10.15705 -9.75802 -9.69396 -9.18822 -8.45169 -8.35033 -7.95894 -7.55906 -6.06258 -4.11413 0.95756 1.04743 1.66013 1.90448 2.40912 2.86770 3.31907 3.36463 3.39557 3.73376 3.90880 4.22280 4.43410 4.65863 4.69942 4.87114 4.98840 5.10277 5.11087 5.28451 5.38043 5.44297 5.53366 5.65577 5.67779 5.73480 6.02593 6.15590 6.20776 6.43497 6.62131 6.98915 7.37645 7.44400 7.45510 7.89488 8.18964 8.26560 8.83313 8.98288 9.53744 11.01803 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.003868 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.737460 B = 7236.298433 C = 7679.060559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.128 3.872 3 N -0.276 5.276 4 N -0.359 5.359 5 C 0.107 3.893 6 C -0.008 4.008 7 S 0.207 5.793 8 C -0.247 4.247 9 C 0.579 3.421 10 O -0.526 6.526 11 N -0.595 5.595 12 C 0.070 3.930 13 C 0.247 3.753 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.006 3.994 23 C -0.225 4.225 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 20.942 2.316 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.094 5.094 4 N -0.146 5.146 5 C -0.034 4.034 6 C -0.244 4.244 7 S 0.462 5.538 8 C -0.367 4.367 9 C 0.365 3.635 10 O -0.404 6.404 11 N -0.327 5.327 12 C -0.078 4.078 13 C 0.129 3.871 14 C -0.569 4.569 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.027 4.027 23 C -0.241 4.241 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.347 21.649 2.463 21.830 hybrid contribution -1.347 -0.928 -1.027 1.931 sum 0.000 20.721 1.436 20.770 Atomic orbital electron populations 1.20276 0.85817 1.03847 1.03493 1.22364 0.96699 0.88191 0.97381 1.76625 0.86126 1.22881 1.23771 1.47714 1.04748 1.01091 1.61042 1.21867 0.84160 0.93947 1.03426 1.25925 1.02757 0.90651 1.05083 1.84758 1.03621 0.87919 1.77535 1.23801 0.95968 0.97659 1.19258 1.16874 0.84060 0.84426 0.78176 1.90811 1.37528 1.61700 1.50396 1.48028 1.05448 1.09852 1.69353 1.21809 0.90680 0.94290 1.00992 1.19377 0.98156 0.71569 0.98048 1.21397 1.49500 0.92366 0.93604 0.92355 1.24923 0.94950 0.96663 0.97421 1.69917 1.48862 1.03469 1.31063 0.86547 0.78845 0.77663 0.84312 1.20222 1.21149 1.20110 1.19439 0.98891 0.90366 0.94033 1.18914 0.91484 0.94134 1.19564 0.89946 0.90519 0.89763 0.90712 0.89041 0.89592 0.92617 0.88384 0.91671 0.94582 0.93428 0.92587 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.46 36.00 0.38 -0.33 16 2 C 0.13 1.71 7.28 -81.58 -0.59 1.11 16 3 N -0.28 -3.82 12.44 34.16 0.42 -3.39 16 4 N -0.36 -4.59 4.05 -66.03 -0.27 -4.86 16 5 C 0.11 0.84 11.48 59.84 0.69 1.52 16 6 C -0.01 -0.12 8.01 -15.26 -0.12 -0.24 16 7 S 0.21 2.76 17.96 -107.50 -1.93 0.83 16 8 C -0.25 -4.31 6.12 -37.67 -0.23 -4.54 16 9 C 0.58 12.61 7.63 -12.89 -0.10 12.51 16 10 O -0.53 -13.52 16.34 5.19 0.08 -13.43 16 11 N -0.60 -12.75 2.86 -184.54 -0.53 -13.28 16 12 C 0.07 1.10 8.88 59.85 0.53 1.63 16 13 C 0.25 6.39 5.13 -5.19 -0.03 6.36 16 14 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.01 0.09 9.85 -40.33 -0.40 -0.31 16 23 C -0.23 -3.38 6.55 -107.25 -0.70 -4.08 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 31 H 0.10 1.51 8.02 -51.92 -0.42 1.10 16 32 H 0.07 0.94 4.64 -22.97 -0.11 0.83 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.15 2.37 7.99 -52.48 -0.42 1.95 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -34.88 322.85 -6.86 -41.74 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.23 Total: -3.73 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.00 Total: 0.12 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.37 Total: -47.05 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.93 Total: 0.83 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.88 -6.86 -41.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.387 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds