Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29885 * 125.73467 * 2 1 4 4 N 1.39778 * 109.43164 * 180.16493 * 3 2 1 5 5 C 1.46491 * 125.94680 * 179.80403 * 4 3 2 6 6 C 1.36732 * 108.09806 * 359.55095 * 4 3 2 7 7 S 1.75884 * 142.80262 * 180.29127 * 6 4 3 8 8 C 1.75578 * 91.47106 * 179.97438 * 7 6 4 9 9 C 1.46591 * 124.78923 * 179.97438 * 8 7 6 10 10 O 1.21703 * 120.00256 * 171.08493 * 9 8 7 11 11 N 1.34776 * 119.99920 * 351.08231 * 9 8 7 12 12 C 1.46500 * 119.99790 * 359.81278 * 11 9 8 13 13 C 1.46502 * 120.00120 * 179.80278 * 11 9 8 14 14 C 1.50704 * 109.46601 * 90.00592 * 13 11 9 15 15 H 1.07995 * 120.00188 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99458 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00319 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99635 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47203 * 59.99893 * 18 16 14 20 20 H 1.48498 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46978 * 299.99715 * 18 16 14 22 22 C 1.34114 * 110.42610 * 359.97438 * 8 7 6 23 23 C 1.38522 * 107.41851 * 0.25833 * 6 4 3 24 24 H 1.09001 * 109.47412 * 270.33037 * 1 2 3 25 25 H 1.08998 * 109.47426 * 30.32637 * 1 2 3 26 26 H 1.08992 * 109.47477 * 150.32921 * 1 2 3 27 27 H 1.08997 * 109.47515 * 269.69760 * 5 4 3 28 28 H 1.09007 * 109.47281 * 29.70291 * 5 4 3 29 29 H 1.09003 * 109.46772 * 149.69504 * 5 4 3 30 30 H 1.08997 * 109.47687 * 83.39614 * 12 11 9 31 31 H 1.09012 * 109.47028 * 203.39621 * 12 11 9 32 32 H 1.08999 * 109.47024 * 323.38629 * 12 11 9 33 33 H 1.09000 * 109.47231 * 209.99970 * 13 11 9 34 34 H 1.08995 * 109.46865 * 330.00626 * 13 11 9 35 35 H 0.96998 * 119.99609 * 180.02562 * 17 16 14 36 36 H 1.08003 * 122.34701 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0543 0.0000 4 7 3.6071 0.6619 -0.0038 5 6 4.7654 1.5588 -0.0090 6 6 3.6500 -0.7047 0.0040 7 16 4.7567 -2.0717 0.0124 8 6 3.4209 -3.2111 0.0189 9 6 3.5659 -4.6698 0.0271 10 8 2.5900 -5.3774 0.1945 11 7 4.7799 -5.2274 -0.1508 12 6 5.9540 -4.3756 -0.3565 13 6 4.9256 -6.6851 -0.1383 14 6 4.7543 -7.2189 -1.5372 15 1 4.5564 -6.5403 -2.3537 16 6 4.8493 -8.5738 -1.7744 17 7 5.0898 -9.4002 -0.7800 18 14 4.6364 -9.2356 -3.5082 19 1 5.6698 -8.6428 -4.3948 20 1 4.7828 -10.7133 -3.4955 21 1 3.2865 -8.8769 -4.0127 22 6 2.2492 -2.5587 0.0153 23 6 2.3419 -1.1606 0.0066 24 1 -0.3634 0.0059 1.0276 25 1 -0.3634 0.8870 -0.5189 26 1 -0.3634 -0.8928 -0.5087 27 1 5.0527 1.7753 -1.0379 28 1 4.5079 2.4879 0.4996 29 1 5.5975 1.0805 0.5076 30 1 6.3360 -4.0439 0.6090 31 1 6.7264 -4.9413 -0.8779 32 1 5.6735 -3.5082 -0.9539 33 1 5.9163 -6.9481 0.2321 34 1 4.1670 -7.1204 0.5121 35 1 5.1570 -10.3533 -0.9470 36 1 1.3004 -3.0748 0.0187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067509515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = 48.191874 kcal Electronic energy + Delta-G solvation = -20612.752817 eV Core-core repulsion = 17417.754567 eV Total energy + Delta-G solvation = -3194.998250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35820 -40.70391 -37.02083 -36.45748 -34.77279 -34.70521 -30.99516 -30.43357 -29.36470 -27.75636 -26.71785 -25.33359 -23.98620 -22.56057 -20.98700 -19.71666 -18.89202 -18.67961 -17.70147 -17.18314 -16.90497 -16.54579 -16.37969 -16.13545 -15.36756 -14.70596 -14.51377 -14.37103 -14.34156 -14.15521 -13.96654 -13.73766 -13.52838 -13.27125 -13.23002 -12.96642 -12.88729 -12.56604 -12.42141 -12.22014 -11.99368 -11.75247 -11.63838 -10.92777 -10.77447 -10.62593 -9.62266 -9.49132 -8.75108 -8.21275 -6.36141 -0.29945 -0.06307 0.59778 0.70451 1.39016 1.43309 1.50362 1.54226 1.65800 2.13722 2.34350 2.42618 3.08609 3.34714 3.45687 3.80018 3.81339 4.10396 4.28047 4.35007 4.41011 4.46098 4.59980 4.74296 4.76636 4.81406 4.84890 4.96523 5.01921 5.09415 5.23514 5.44815 5.50430 5.70729 5.78068 6.04932 6.44369 6.57230 6.71757 7.20103 7.37041 8.85611 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.003868 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.737460 B = 7236.298433 C = 7679.060559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.126 3.874 3 N -0.290 5.290 4 N -0.356 5.356 5 C 0.093 3.907 6 C -0.011 4.011 7 S 0.278 5.722 8 C -0.289 4.289 9 C 0.573 3.427 10 O -0.584 6.584 11 N -0.602 5.602 12 C 0.063 3.937 13 C 0.261 3.739 14 C -0.547 4.547 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.018 3.982 23 C -0.252 4.252 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 23.400 1.319 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 N -0.108 5.108 4 N -0.143 5.143 5 C -0.047 4.047 6 C -0.249 4.249 7 S 0.533 5.467 8 C -0.408 4.408 9 C 0.362 3.638 10 O -0.466 6.466 11 N -0.332 5.332 12 C -0.082 4.082 13 C 0.140 3.860 14 C -0.585 4.585 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.016 4.016 23 C -0.267 4.267 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.471 24.176 1.463 24.346 hybrid contribution -1.676 -1.529 -0.664 2.364 sum 0.795 22.647 0.799 22.675 Atomic orbital electron populations 1.20434 0.83504 1.04854 1.04704 1.22905 0.98303 0.87321 0.96273 1.76621 0.86803 1.23102 1.24253 1.48213 1.05507 1.00972 1.59584 1.22330 0.83162 0.94046 1.05117 1.26131 1.02801 0.91702 1.04232 1.84195 1.00257 0.85456 1.76834 1.23355 0.98751 0.96064 1.22621 1.17421 0.83268 0.86203 0.76915 1.90756 1.39240 1.63684 1.52933 1.47983 1.07285 1.08744 1.69226 1.22104 0.88759 0.94143 1.03220 1.18884 0.96357 0.74429 0.96303 1.21662 1.49694 0.92873 0.94298 0.92845 1.25809 0.94387 0.96898 1.01676 1.70031 1.49467 1.03847 1.33223 0.85493 0.78794 0.77332 0.79348 1.18369 1.20266 1.20510 1.19495 0.98525 0.91170 0.92391 1.19034 0.92705 0.93785 1.21199 0.88537 0.89013 0.89242 0.89043 0.87522 0.87549 0.89537 0.87891 0.89829 0.94647 0.97844 0.92294 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.46 71.24 0.74 -0.55 16 2 C 0.13 3.16 7.28 44.03 0.32 3.48 16 3 N -0.29 -7.35 12.44 -45.85 -0.57 -7.92 16 4 N -0.36 -8.10 4.05 -362.82 -1.47 -9.57 16 5 C 0.09 1.11 11.48 127.77 1.47 2.58 16 6 C -0.01 -0.28 8.01 84.00 0.67 0.40 16 7 S 0.28 6.76 17.96 -56.49 -1.01 5.75 16 8 C -0.29 -10.06 6.12 23.51 0.14 -9.92 16 9 C 0.57 25.87 7.63 86.42 0.66 26.53 16 10 O -0.58 -31.86 16.34 -4.36 -0.07 -31.93 16 11 N -0.60 -26.31 2.86 -855.97 -2.45 -28.76 16 12 C 0.06 1.91 8.88 127.77 1.14 3.04 16 13 C 0.26 14.04 5.13 85.63 0.44 14.47 16 14 C -0.55 -31.43 9.39 25.60 0.24 -31.19 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.67 5.46 84.66 0.46 1.13 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 C 0.02 0.59 9.85 21.79 0.21 0.80 16 23 C -0.25 -7.27 6.55 -21.57 -0.14 -7.41 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 2.09 7.71 -2.39 -0.02 2.07 16 31 H 0.10 3.03 8.02 -2.38 -0.02 3.01 16 32 H 0.08 2.21 4.64 -20.80 -0.10 2.12 16 33 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 35 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.15 4.75 7.99 -2.91 -0.02 4.72 16 Total: -1.00 -78.20 322.85 4.11 -74.08 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.02 Total: 3.51 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.36 Total: 3.37 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.20 Total: -101.44 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.07 Total: -31.93 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.01 Total: 5.75 kcal Total: -78.20 4.11 -74.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.275 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds