Wall clock time and date at job start Tue Mar 31 2020 07:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47446 * 2 1 4 4 N 1.46496 * 109.47445 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00396 * 270.00111 * 4 3 2 6 6 H 1.07996 * 119.99679 * 322.27852 * 5 4 3 7 7 C 1.38811 * 120.00020 * 142.27355 * 5 4 3 8 8 N 1.31618 * 120.00158 * 156.65594 * 7 5 4 9 9 Si 1.86798 * 120.00025 * 336.65276 * 7 5 4 10 10 H 1.48499 * 109.47182 * 95.21641 * 9 7 5 11 11 H 1.48502 * 109.47157 * 215.21211 * 9 7 5 12 12 H 1.48497 * 109.47444 * 335.21590 * 9 7 5 13 13 C 1.46508 * 119.99767 * 89.99747 * 4 3 2 14 14 C 1.50702 * 109.46608 * 82.77335 * 13 4 3 15 15 N 1.29598 * 118.88156 * 0.02562 * 14 13 4 16 16 C 1.37004 * 121.68264 * 179.97438 * 15 14 13 17 17 C 1.39912 * 129.16238 * 180.02562 * 16 15 14 18 18 C 1.32762 * 115.82409 * 180.02562 * 17 16 15 19 19 S 1.75579 * 110.53994 * 359.97438 * 18 17 16 20 20 C 1.39104 * 118.18657 * 359.97438 * 16 15 14 21 21 C 1.41551 * 119.10218 * 0.03367 * 20 16 15 22 22 O 1.21959 * 120.64149 * 180.02562 * 21 20 16 23 23 N 1.34886 * 118.71640 * 359.68532 * 21 20 16 24 24 H 0.97003 * 119.96394 * 180.29520 * 23 21 20 25 25 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46864 * 299.99950 * 1 2 3 27 27 H 1.08996 * 109.47166 * 59.99998 * 1 2 3 28 28 H 1.08997 * 109.47119 * 239.99882 * 2 1 3 29 29 H 1.09003 * 109.47121 * 120.00421 * 2 1 3 30 30 H 1.09006 * 109.47048 * 60.00163 * 3 2 1 31 31 H 1.08996 * 109.46940 * 300.00141 * 3 2 1 32 32 H 0.96997 * 120.00491 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47137 * 202.77063 * 13 4 3 34 34 H 1.08990 * 109.47244 * 322.77862 * 13 4 3 35 35 H 1.08000 * 122.08707 * 359.97438 * 17 16 15 36 36 H 1.08007 * 124.72653 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.4426 1.1868 6 1 3.8183 2.0150 2.0241 7 6 5.3597 0.7071 1.3129 8 7 6.2484 1.0358 2.2264 9 14 5.6735 -0.7495 0.1863 10 1 6.4969 -0.3128 -0.9698 11 1 6.3954 -1.8087 0.9360 12 1 4.3778 -1.2850 -0.3031 13 6 4.2381 1.4422 -1.2679 14 6 4.3346 2.8517 -1.7924 15 7 3.7986 3.8126 -1.1076 16 6 3.8527 5.1146 -1.5303 17 6 3.3344 6.2632 -0.9224 18 6 3.5411 7.4037 -1.5699 19 16 4.4383 7.1169 -3.0517 20 6 4.5049 5.3901 -2.7277 21 6 5.0824 4.3240 -3.4583 22 8 5.6611 4.5337 -4.5111 23 7 4.9862 3.0727 -2.9639 24 1 5.3792 2.3292 -3.4475 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 7.0665 0.5221 2.3144 33 1 5.2403 1.0445 -1.1083 34 1 3.7114 0.8205 -1.9918 35 1 2.7987 6.2244 0.0146 36 1 3.2050 8.3728 -1.2318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073278822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:41 Heat of formation + Delta-G solvation = 47.068940 kcal Electronic energy + Delta-G solvation = -21380.526084 eV Core-core repulsion = 18185.479141 eV Total energy + Delta-G solvation = -3195.046944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22614 -37.83709 -37.07877 -35.74905 -33.00976 -32.53626 -31.49718 -29.81673 -27.40086 -25.84955 -24.75978 -23.07124 -21.94420 -21.01402 -19.96459 -18.89990 -18.19679 -17.14731 -16.44456 -16.03381 -15.76503 -15.25696 -14.58229 -14.46816 -14.07648 -13.93087 -13.38734 -13.12322 -12.90154 -12.79157 -12.68360 -12.55837 -12.24977 -11.56710 -11.28298 -11.02435 -10.90011 -10.80325 -10.63012 -10.36257 -10.16220 -9.93689 -9.85899 -9.69672 -9.41866 -8.91291 -8.67530 -7.66117 -7.05012 -6.11702 -3.52397 0.40536 1.46758 1.74407 1.98923 2.52339 3.02919 3.12652 3.35823 3.37116 3.87607 4.13894 4.36273 4.60387 4.83474 4.97306 5.18549 5.20962 5.39506 5.57133 5.66533 5.73844 5.87055 5.91661 5.98259 6.05049 6.12302 6.15547 6.35381 6.48204 6.49633 6.59276 6.79926 6.84196 7.03164 7.86694 7.98087 8.26670 8.33507 8.82366 9.55669 9.93802 11.03605 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.005594 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.096504 B = 5004.189132 C = 5505.137870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.159 3.841 4 N -0.568 5.568 5 C -0.257 4.257 6 H 0.084 0.916 7 C 0.034 3.966 8 N -0.890 5.890 9 Si 0.858 3.142 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.260 1.260 13 C 0.171 3.829 14 C 0.382 3.618 15 N -0.468 5.468 16 C 0.184 3.816 17 C -0.121 4.121 18 C -0.179 4.179 19 S 0.178 5.822 20 C -0.349 4.349 21 C 0.571 3.429 22 O -0.549 6.549 23 N -0.640 5.640 24 H 0.418 0.582 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 5.998 -8.001 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.034 3.966 4 N -0.285 5.285 5 C -0.386 4.386 6 H 0.101 0.899 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.687 3.313 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.184 1.184 13 C 0.040 3.960 14 C 0.109 3.891 15 N -0.189 5.189 16 C 0.058 3.942 17 C -0.152 4.152 18 C -0.316 4.316 19 S 0.441 5.559 20 C -0.471 4.471 21 C 0.366 3.634 22 O -0.428 6.428 23 N -0.284 5.284 24 H 0.257 0.743 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.197 7.247 -8.835 13.504 hybrid contribution 0.569 -1.833 -0.271 1.938 sum -6.629 5.414 -9.106 12.497 Atomic orbital electron populations 1.21715 0.97054 1.00565 1.01114 1.22147 0.94009 1.00631 1.01936 1.20894 0.82749 0.93156 0.99825 1.43736 1.00906 1.83448 1.00412 1.18777 1.05925 1.23899 0.90006 0.89885 1.25521 0.96735 0.97865 0.96545 1.69886 1.08037 1.39051 1.36056 0.87210 0.78412 0.85441 0.80287 1.21552 1.22281 1.18398 1.20847 0.99581 0.85466 0.90139 1.25759 0.83535 1.00286 0.79535 1.68709 1.24334 0.96439 1.29427 1.19398 0.92415 0.92762 0.89620 1.19570 1.03664 0.89395 1.02570 1.25709 1.04092 1.02475 0.99320 1.83865 1.53944 0.97207 1.20860 1.24491 1.17734 0.99960 1.04868 1.15886 0.80299 0.82124 0.85103 1.90929 1.45037 1.83666 1.23209 1.44735 1.50008 1.10784 1.22846 0.74349 0.93699 0.92965 0.93520 0.93321 0.91498 0.92452 0.94250 0.92558 0.88784 0.90560 0.82777 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.15 -2.40 6.26 -26.73 -0.17 -2.57 16 3 C 0.16 2.86 5.47 -4.04 -0.02 2.83 16 4 N -0.57 -11.92 1.48 -174.61 -0.26 -12.18 16 5 C -0.26 -6.54 9.90 -15.06 -0.15 -6.69 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 8 N -0.89 -25.68 13.97 55.49 0.78 -24.91 16 9 Si 0.86 19.57 25.15 -169.99 -4.27 15.30 16 10 H -0.29 -6.23 6.67 56.52 0.38 -5.86 16 11 H -0.30 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.17 3.20 4.70 -5.19 -0.02 3.18 16 14 C 0.38 7.03 7.67 -155.41 -1.19 5.83 16 15 N -0.47 -9.17 9.40 -8.40 -0.08 -9.25 16 16 C 0.18 3.28 7.01 -84.61 -0.59 2.69 16 17 C -0.12 -1.74 10.15 -40.83 -0.41 -2.16 16 18 C -0.18 -2.09 11.13 28.86 0.32 -1.77 16 19 S 0.18 2.45 23.30 -107.50 -2.50 -0.06 16 20 C -0.35 -6.16 6.49 -38.00 -0.25 -6.41 16 21 C 0.57 10.64 7.76 -14.95 -0.12 10.53 16 22 O -0.55 -11.22 17.97 4.96 0.09 -11.13 16 23 N -0.64 -10.72 5.28 -12.13 -0.06 -10.78 16 24 H 0.42 5.74 8.78 -40.82 -0.36 5.38 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 31 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.09 1.91 3.76 -51.93 -0.20 1.72 16 34 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 35 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.18 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -31.22 319.08 -8.19 -39.41 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.35 Total: 4.06 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.33 Total: 4.74 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.37 Total: -57.12 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.27 Total: 15.30 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.50 Total: -0.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.22 -8.19 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073278822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.474 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds