Wall clock time and date at job start Tue Mar 31 2020 07:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47446 * 2 1 4 4 N 1.46496 * 109.47445 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00396 * 270.00111 * 4 3 2 6 6 H 1.07996 * 119.99679 * 322.27852 * 5 4 3 7 7 C 1.38811 * 120.00020 * 142.27355 * 5 4 3 8 8 N 1.31618 * 120.00158 * 156.65594 * 7 5 4 9 9 Si 1.86798 * 120.00025 * 336.65276 * 7 5 4 10 10 H 1.48499 * 109.47182 * 95.21641 * 9 7 5 11 11 H 1.48502 * 109.47157 * 215.21211 * 9 7 5 12 12 H 1.48497 * 109.47444 * 335.21590 * 9 7 5 13 13 C 1.46508 * 119.99767 * 89.99747 * 4 3 2 14 14 C 1.50702 * 109.46608 * 82.77335 * 13 4 3 15 15 N 1.29598 * 118.88156 * 0.02562 * 14 13 4 16 16 C 1.37004 * 121.68264 * 179.97438 * 15 14 13 17 17 C 1.39912 * 129.16238 * 180.02562 * 16 15 14 18 18 C 1.32762 * 115.82409 * 180.02562 * 17 16 15 19 19 S 1.75579 * 110.53994 * 359.97438 * 18 17 16 20 20 C 1.39104 * 118.18657 * 359.97438 * 16 15 14 21 21 C 1.41551 * 119.10218 * 0.03367 * 20 16 15 22 22 O 1.21959 * 120.64149 * 180.02562 * 21 20 16 23 23 N 1.34886 * 118.71640 * 359.68532 * 21 20 16 24 24 H 0.97003 * 119.96394 * 180.29520 * 23 21 20 25 25 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46864 * 299.99950 * 1 2 3 27 27 H 1.08996 * 109.47166 * 59.99998 * 1 2 3 28 28 H 1.08997 * 109.47119 * 239.99882 * 2 1 3 29 29 H 1.09003 * 109.47121 * 120.00421 * 2 1 3 30 30 H 1.09006 * 109.47048 * 60.00163 * 3 2 1 31 31 H 1.08996 * 109.46940 * 300.00141 * 3 2 1 32 32 H 0.96997 * 120.00491 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47137 * 202.77063 * 13 4 3 34 34 H 1.08990 * 109.47244 * 322.77862 * 13 4 3 35 35 H 1.08000 * 122.08707 * 359.97438 * 17 16 15 36 36 H 1.08007 * 124.72653 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.4426 1.1868 6 1 3.8183 2.0150 2.0241 7 6 5.3597 0.7071 1.3129 8 7 6.2484 1.0358 2.2264 9 14 5.6735 -0.7495 0.1863 10 1 6.4969 -0.3128 -0.9698 11 1 6.3954 -1.8087 0.9360 12 1 4.3778 -1.2850 -0.3031 13 6 4.2381 1.4422 -1.2679 14 6 4.3346 2.8517 -1.7924 15 7 3.7986 3.8126 -1.1076 16 6 3.8527 5.1146 -1.5303 17 6 3.3344 6.2632 -0.9224 18 6 3.5411 7.4037 -1.5699 19 16 4.4383 7.1169 -3.0517 20 6 4.5049 5.3901 -2.7277 21 6 5.0824 4.3240 -3.4583 22 8 5.6611 4.5337 -4.5111 23 7 4.9862 3.0727 -2.9639 24 1 5.3792 2.3292 -3.4475 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 7.0665 0.5221 2.3144 33 1 5.2403 1.0445 -1.1083 34 1 3.7114 0.8205 -1.9918 35 1 2.7987 6.2244 0.0146 36 1 3.2050 8.3728 -1.2318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073278822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:41 Heat of formation + Delta-G solvation = 26.883059 kcal Electronic energy + Delta-G solvation = -21381.401410 eV Core-core repulsion = 18185.479141 eV Total energy + Delta-G solvation = -3195.922269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59390 -39.26477 -38.48243 -37.17140 -34.54753 -33.92723 -33.18671 -31.19062 -28.83489 -27.47964 -26.00381 -24.58850 -23.38348 -22.22775 -21.45353 -20.20911 -19.57986 -18.91596 -17.69638 -17.53608 -17.16811 -16.87925 -16.07692 -15.79669 -15.51482 -15.15691 -14.86276 -14.54366 -14.42111 -14.27531 -14.00877 -13.82570 -13.73061 -13.02572 -12.75215 -12.40372 -12.26750 -12.11521 -12.10508 -11.99122 -11.63301 -11.53032 -11.28747 -11.16345 -10.81084 -10.62135 -10.09209 -8.90397 -8.82378 -8.14860 -5.53328 -0.84222 0.32981 0.43268 0.86988 1.24347 1.30654 1.49179 1.58396 1.69319 2.44728 2.51176 2.83300 3.02476 3.36189 3.50039 3.69721 3.99112 4.26984 4.29387 4.34664 4.43653 4.55351 4.72310 4.79678 4.86215 4.90262 5.01555 5.05677 5.23227 5.25823 5.34060 5.49165 5.50416 5.67477 5.97207 6.28107 6.61079 6.84930 7.01869 7.62676 8.03960 9.04907 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.005594 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.096504 B = 5004.189132 C = 5505.137870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.161 3.839 4 N -0.577 5.577 5 C -0.238 4.238 6 H 0.037 0.963 7 C -0.024 4.024 8 N -0.948 5.948 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.313 1.313 12 H -0.235 1.235 13 C 0.170 3.830 14 C 0.378 3.622 15 N -0.496 5.496 16 C 0.167 3.833 17 C -0.150 4.150 18 C -0.137 4.137 19 S 0.209 5.791 20 C -0.384 4.384 21 C 0.565 3.435 22 O -0.575 6.575 23 N -0.629 5.629 24 H 0.431 0.569 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 6.575 -10.059 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.037 3.963 4 N -0.295 5.295 5 C -0.368 4.368 6 H 0.055 0.945 7 C -0.220 4.220 8 N -0.592 5.592 9 Si 0.749 3.251 10 H -0.194 1.194 11 H -0.242 1.242 12 H -0.157 1.157 13 C 0.039 3.961 14 C 0.104 3.896 15 N -0.217 5.217 16 C 0.041 3.959 17 C -0.180 4.180 18 C -0.275 4.275 19 S 0.472 5.528 20 C -0.505 4.505 21 C 0.361 3.639 22 O -0.457 6.457 23 N -0.273 5.273 24 H 0.271 0.729 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.181 0.819 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.778 7.821 -10.936 16.057 hybrid contribution 0.959 -1.777 0.388 2.056 sum -7.819 6.044 -10.548 14.454 Atomic orbital electron populations 1.21651 0.94412 1.01803 1.01899 1.22041 0.96319 0.98680 1.01077 1.20945 0.80986 0.94553 0.99845 1.43738 1.02020 1.83912 0.99841 1.18507 1.05516 1.22115 0.90697 0.94549 1.26123 0.96641 1.00492 0.98748 1.70039 1.08978 1.40690 1.39508 0.86158 0.79385 0.80865 0.78675 1.19402 1.24162 1.15738 1.20893 0.99150 0.86147 0.89865 1.25366 0.84201 0.99911 0.80081 1.68613 1.25053 0.97728 1.30302 1.19806 0.93091 0.92831 0.90222 1.19739 1.05324 0.89218 1.03678 1.26272 1.00601 1.03527 0.97076 1.83773 1.53373 0.94143 1.21486 1.24748 1.18483 1.02046 1.05230 1.16084 0.80105 0.82763 0.84904 1.90903 1.46442 1.84085 1.24274 1.44484 1.49515 1.10972 1.22360 0.72859 0.92241 0.92970 0.91995 0.92483 0.93963 0.94087 0.92545 0.93032 0.90194 0.86391 0.81863 0.75797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.14 -4.34 6.26 30.59 0.19 -4.15 16 3 C 0.16 5.64 5.47 86.38 0.47 6.11 16 4 N -0.58 -24.00 1.48 -706.35 -1.05 -25.05 16 5 C -0.24 -12.50 9.90 84.03 0.83 -11.66 16 6 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 7 C -0.02 -1.30 5.23 84.86 0.44 -0.86 16 8 N -0.95 -57.16 13.97 21.65 0.30 -56.86 16 9 Si 0.92 40.53 25.15 68.60 1.73 42.26 16 10 H -0.27 -10.78 6.67 99.48 0.66 -10.11 16 11 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 12 H -0.23 -9.24 7.11 99.48 0.71 -8.53 16 13 C 0.17 6.08 4.70 85.63 0.40 6.48 16 14 C 0.38 13.60 7.67 138.13 1.06 14.65 16 15 N -0.50 -19.31 9.40 -180.48 -1.70 -21.01 16 16 C 0.17 5.82 7.01 38.95 0.27 6.10 16 17 C -0.15 -4.04 10.15 21.50 0.22 -3.82 16 18 C -0.14 -2.72 11.13 66.64 0.74 -1.98 16 19 S 0.21 5.23 23.30 -56.49 -1.32 3.91 16 20 C -0.38 -13.17 6.49 23.30 0.15 -13.02 16 21 C 0.57 20.72 7.76 85.04 0.66 21.38 16 22 O -0.57 -23.20 17.97 -5.18 -0.09 -23.30 16 23 N -0.63 -20.48 5.28 -310.34 -1.64 -22.11 16 24 H 0.43 11.25 8.78 -92.71 -0.81 10.44 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.55 8.04 -2.38 -0.02 1.53 16 31 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.08 3.12 3.76 -2.39 -0.01 3.11 16 34 H 0.12 3.23 8.12 -2.39 -0.02 3.21 16 35 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.23 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -71.26 319.08 2.65 -68.61 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.26 Total: 16.90 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 6.16 Total: 16.65 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -4.08 Total: -125.04 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.09 Total: -23.30 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.73 Total: 42.26 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.32 Total: 3.91 kcal Total: -71.26 2.65 -68.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073278822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.492 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds