Wall clock time and date at job start Tue Mar 31 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30895 * 121.68994 * 2 1 4 4 S 1.75721 * 109.69762 * 180.02562 * 3 2 1 5 5 C 1.76448 * 90.71994 * 359.97438 * 4 3 2 6 6 N 1.33057 * 129.52466 * 180.02562 * 5 4 3 7 7 C 1.32417 * 121.91282 * 179.97438 * 6 5 4 8 8 C 1.50691 * 120.26483 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47453 * 295.00889 * 8 7 6 10 10 C 1.46906 * 110.99477 * 293.94993 * 9 8 7 11 11 C 1.46901 * 111.00095 * 169.99809 * 9 8 7 12 12 C 1.50691 * 109.46925 * 189.99680 * 11 9 8 13 13 H 1.07997 * 120.00183 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00184 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00478 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46823 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47073 * 119.99890 * 16 14 12 19 19 H 1.48498 * 109.47409 * 240.00130 * 16 14 12 20 20 C 1.37881 * 119.47580 * 359.85793 * 7 6 5 21 21 C 1.39662 * 118.80999 * 0.33210 * 20 7 6 22 22 O 1.22103 * 120.19939 * 179.88178 * 21 20 7 23 23 N 1.35364 * 109.13725 * 359.97438 * 5 4 3 24 24 H 1.09004 * 109.47407 * 269.97431 * 1 2 3 25 25 H 1.09001 * 109.47767 * 29.97932 * 1 2 3 26 26 H 1.09006 * 109.47043 * 149.97909 * 1 2 3 27 27 H 1.07997 * 125.15328 * 0.05656 * 3 2 1 28 28 H 1.09010 * 109.46818 * 55.00445 * 8 7 6 29 29 H 1.09004 * 109.47380 * 175.00316 * 8 7 6 30 30 H 1.08999 * 109.46902 * 59.99904 * 10 9 8 31 31 H 1.08997 * 109.46385 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.46719 * 299.99767 * 10 9 8 33 33 H 1.09000 * 109.47030 * 309.99746 * 11 9 8 34 34 H 1.08999 * 109.46770 * 69.99760 * 11 9 8 35 35 H 0.97003 * 119.99907 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.59292 * 180.19646 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1138 0.0000 4 16 3.9134 0.7487 -0.0007 5 6 3.5685 -0.9818 -0.0002 6 7 4.4095 -2.0128 0.0000 7 6 3.9809 -3.2657 0.0009 8 6 4.9666 -4.4056 0.0018 9 7 5.7299 -4.3940 -1.2533 10 6 4.8602 -4.6849 -2.4010 11 6 6.8556 -5.3359 -1.1937 12 6 7.7522 -5.1232 -2.3860 13 1 7.5099 -4.3644 -3.1153 14 6 8.8820 -5.8971 -2.5458 15 7 9.1769 -6.8214 -1.6578 16 14 9.9932 -5.6339 -4.0241 17 1 9.4441 -4.5424 -4.8679 18 1 11.3545 -5.2634 -3.5604 19 1 10.0648 -6.8863 -4.8188 20 6 2.6256 -3.5192 0.0046 21 6 1.7391 -2.4400 0.0001 22 8 0.5338 -2.6353 0.0010 23 7 2.2276 -1.1670 0.0010 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3635 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.7699 2.1067 0.0009 28 1 5.6501 -4.2942 0.8437 29 1 4.4299 -5.3500 0.0920 30 1 4.0752 -3.9312 -2.4622 31 1 5.4505 -4.6696 -3.3171 32 1 4.4097 -5.6694 -2.2750 33 1 7.4224 -5.1672 -0.2781 34 1 6.4754 -6.3574 -1.2026 35 1 9.9720 -7.3657 -1.7700 36 1 2.2562 -4.5340 0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:32 Heat of formation + Delta-G solvation = 50.566772 kcal Electronic energy + Delta-G solvation = -20765.900460 eV Core-core repulsion = 17571.005194 eV Total energy + Delta-G solvation = -3194.895266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.51448 -38.23127 -37.84765 -36.13235 -32.92265 -32.21788 -31.01087 -28.88024 -27.97353 -27.00291 -25.06402 -24.40879 -22.61746 -21.21762 -20.35848 -18.78225 -18.34687 -17.04550 -16.89826 -16.34907 -15.48641 -14.97884 -14.71361 -14.27203 -14.20184 -14.04472 -13.81349 -13.58854 -13.49617 -13.34604 -13.07692 -12.27632 -12.03374 -11.95417 -11.53834 -11.50554 -11.09517 -10.92014 -10.68566 -10.52580 -10.37259 -10.18472 -10.04669 -9.76329 -9.38119 -9.20071 -8.44498 -7.74669 -7.32443 -6.03312 -4.04200 0.04853 0.43450 1.13935 1.21716 1.80202 2.07206 3.31762 3.39121 3.43594 3.46894 3.99914 4.07998 4.42558 4.59857 4.67838 4.83088 5.00357 5.11531 5.22053 5.31604 5.33990 5.43808 5.72030 5.75023 5.85427 5.99126 6.09489 6.20021 6.28564 6.35794 6.70485 7.21052 7.27815 7.58969 7.63280 7.77573 8.02948 8.13018 8.49146 9.03113 9.59846 11.07695 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003664 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.003707 B = 7639.108817 C = 8259.888673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.097 3.903 3 C -0.251 4.251 4 S 0.209 5.791 5 C 0.297 3.703 6 N -0.478 5.478 7 C 0.241 3.759 8 C 0.097 3.903 9 N -0.526 5.526 10 C 0.036 3.964 11 C 0.193 3.807 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.316 4.316 21 C 0.529 3.471 22 O -0.534 6.534 23 N -0.459 5.459 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.198 0.802 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.016 0.984 33 H 0.034 0.966 34 H -0.006 1.006 35 H 0.261 0.739 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.322 16.005 5.046 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.012 4.012 3 C -0.388 4.388 4 S 0.461 5.539 5 C -0.070 4.070 6 N -0.204 5.204 7 C 0.111 3.889 8 C -0.032 4.032 9 N -0.251 5.251 10 C -0.112 4.112 11 C 0.068 3.932 12 C -0.544 4.544 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.346 4.346 21 C 0.334 3.666 22 O -0.413 6.413 23 N -0.171 5.171 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.215 0.785 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.012 0.988 35 H 0.070 0.930 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.734 16.983 5.018 22.410 hybrid contribution -1.547 -1.683 -0.648 2.376 sum -15.281 15.300 4.370 22.062 Atomic orbital electron populations 1.20964 0.85652 1.05456 1.04397 1.19575 0.97237 0.83737 1.00619 1.24902 0.96856 1.02322 1.14727 1.85348 1.02081 0.87921 1.78564 1.26309 0.81292 1.02915 0.96471 1.68130 1.31719 0.97750 1.22778 1.21669 0.92760 0.91016 0.83470 1.21085 0.94177 0.91133 0.96812 1.62130 1.09135 1.54501 0.99290 1.22260 0.95803 0.97084 0.96094 1.19793 0.86690 0.88127 0.98540 1.21163 1.07282 1.18221 1.07710 0.91740 1.24978 0.97743 0.95162 0.96716 1.69966 1.26659 1.21968 1.35247 0.86433 0.80485 0.77923 0.82540 1.19657 1.20980 1.21148 1.22628 0.92574 0.99741 1.19619 1.17281 0.90104 0.80155 0.79081 1.90894 1.14921 1.82825 1.52699 1.45235 1.07280 1.09129 1.55407 0.89755 0.89798 0.88056 0.78498 0.88472 0.92958 0.94305 0.90296 0.96593 0.94822 0.98798 0.92959 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.40 36.00 0.34 -0.56 16 2 C 0.10 1.01 6.60 -81.90 -0.54 0.46 16 3 C -0.25 -1.90 10.79 29.04 0.31 -1.59 16 4 S 0.21 2.03 23.37 -107.50 -2.51 -0.49 16 5 C 0.30 4.20 8.32 -87.91 -0.73 3.47 16 6 N -0.48 -8.06 10.36 -9.02 -0.09 -8.15 16 7 C 0.24 4.03 5.17 -82.48 -0.43 3.60 16 8 C 0.10 1.74 5.37 -4.98 -0.03 1.71 16 9 N -0.53 -11.38 4.74 -245.82 -1.17 -12.54 16 10 C 0.04 0.72 9.18 60.07 0.55 1.27 16 11 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 12 C -0.51 -14.10 8.46 -34.45 -0.29 -14.39 16 13 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.32 -4.97 9.67 -39.18 -0.38 -5.35 16 21 C 0.53 8.41 7.50 -15.01 -0.11 8.29 16 22 O -0.53 -9.17 14.79 4.82 0.07 -9.10 16 23 N -0.46 -6.32 2.82 -62.10 -0.18 -6.50 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.10 1.14 5.92 -51.93 -0.31 0.83 16 27 H 0.20 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.10 1.72 7.93 -51.92 -0.41 1.30 16 29 H 0.05 0.86 7.89 -51.93 -0.41 0.45 16 30 H 0.04 0.71 7.28 -51.93 -0.38 0.33 16 31 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 34 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.16 2.31 7.98 -52.49 -0.42 1.89 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -32.69 318.59 -9.09 -41.78 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.31 Total: -3.96 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.43 Total: 3.31 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.70 Total: -52.92 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.69 -9.09 -41.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.351 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds