Wall clock time and date at job start Tue Mar 31 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30895 * 121.68994 * 2 1 4 4 S 1.75721 * 109.69762 * 180.02562 * 3 2 1 5 5 C 1.76448 * 90.71994 * 359.97438 * 4 3 2 6 6 N 1.33057 * 129.52466 * 180.02562 * 5 4 3 7 7 C 1.32417 * 121.91282 * 179.97438 * 6 5 4 8 8 C 1.50691 * 120.26483 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47453 * 295.00889 * 8 7 6 10 10 C 1.46906 * 110.99477 * 293.94993 * 9 8 7 11 11 C 1.46901 * 111.00095 * 169.99809 * 9 8 7 12 12 C 1.50691 * 109.46925 * 189.99680 * 11 9 8 13 13 H 1.07997 * 120.00183 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00184 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00478 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46823 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47073 * 119.99890 * 16 14 12 19 19 H 1.48498 * 109.47409 * 240.00130 * 16 14 12 20 20 C 1.37881 * 119.47580 * 359.85793 * 7 6 5 21 21 C 1.39662 * 118.80999 * 0.33210 * 20 7 6 22 22 O 1.22103 * 120.19939 * 179.88178 * 21 20 7 23 23 N 1.35364 * 109.13725 * 359.97438 * 5 4 3 24 24 H 1.09004 * 109.47407 * 269.97431 * 1 2 3 25 25 H 1.09001 * 109.47767 * 29.97932 * 1 2 3 26 26 H 1.09006 * 109.47043 * 149.97909 * 1 2 3 27 27 H 1.07997 * 125.15328 * 0.05656 * 3 2 1 28 28 H 1.09010 * 109.46818 * 55.00445 * 8 7 6 29 29 H 1.09004 * 109.47380 * 175.00316 * 8 7 6 30 30 H 1.08999 * 109.46902 * 59.99904 * 10 9 8 31 31 H 1.08997 * 109.46385 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.46719 * 299.99767 * 10 9 8 33 33 H 1.09000 * 109.47030 * 309.99746 * 11 9 8 34 34 H 1.08999 * 109.46770 * 69.99760 * 11 9 8 35 35 H 0.97003 * 119.99907 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.59292 * 180.19646 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1138 0.0000 4 16 3.9134 0.7487 -0.0007 5 6 3.5685 -0.9818 -0.0002 6 7 4.4095 -2.0128 0.0000 7 6 3.9809 -3.2657 0.0009 8 6 4.9666 -4.4056 0.0018 9 7 5.7299 -4.3940 -1.2533 10 6 4.8602 -4.6849 -2.4010 11 6 6.8556 -5.3359 -1.1937 12 6 7.7522 -5.1232 -2.3860 13 1 7.5099 -4.3644 -3.1153 14 6 8.8820 -5.8971 -2.5458 15 7 9.1769 -6.8214 -1.6578 16 14 9.9932 -5.6339 -4.0241 17 1 9.4441 -4.5424 -4.8679 18 1 11.3545 -5.2634 -3.5604 19 1 10.0648 -6.8863 -4.8188 20 6 2.6256 -3.5192 0.0046 21 6 1.7391 -2.4400 0.0001 22 8 0.5338 -2.6353 0.0010 23 7 2.2276 -1.1670 0.0010 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3635 0.8901 -0.5135 26 1 -0.3633 -0.8899 -0.5142 27 1 1.7699 2.1067 0.0009 28 1 5.6501 -4.2942 0.8437 29 1 4.4299 -5.3500 0.0920 30 1 4.0752 -3.9312 -2.4622 31 1 5.4505 -4.6696 -3.3171 32 1 4.4097 -5.6694 -2.2750 33 1 7.4224 -5.1672 -0.2781 34 1 6.4754 -6.3574 -1.2026 35 1 9.9720 -7.3657 -1.7700 36 1 2.2562 -4.5340 0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:31 Heat of formation + Delta-G solvation = 28.747991 kcal Electronic energy + Delta-G solvation = -20766.846593 eV Core-core repulsion = 17571.005194 eV Total energy + Delta-G solvation = -3195.841400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.56276 -39.47056 -38.99725 -37.64529 -34.74771 -33.46939 -32.22650 -29.82650 -29.43682 -28.73064 -26.49245 -25.73303 -24.04539 -22.40377 -21.90616 -19.73347 -19.49462 -18.55703 -17.97103 -17.92809 -16.87939 -16.61194 -15.97120 -15.94073 -15.60755 -15.10191 -14.95471 -14.82156 -14.45583 -14.37844 -14.04182 -13.82189 -13.59981 -13.39995 -13.20503 -12.77961 -12.60649 -12.46894 -12.35045 -12.27375 -11.94811 -11.36857 -11.32276 -11.24501 -10.99483 -10.60332 -10.40820 -9.08540 -8.72299 -8.18752 -6.27908 -1.02917 -0.50564 0.21690 0.43880 0.73328 1.11072 1.42809 1.43684 1.57084 2.26959 2.43367 2.87397 3.06420 3.14294 3.29480 3.72445 3.86467 4.12415 4.21785 4.24667 4.39177 4.43740 4.55241 4.58690 4.63665 4.67185 4.80306 5.00457 5.01403 5.13699 5.17395 5.27559 5.39284 5.65321 6.02824 6.24029 6.43679 6.47358 6.58314 6.86667 7.41158 8.92532 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003664 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.003707 B = 7639.108817 C = 8259.888673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.056 3.944 3 C -0.209 4.209 4 S 0.262 5.738 5 C 0.276 3.724 6 N -0.517 5.517 7 C 0.241 3.759 8 C 0.099 3.901 9 N -0.535 5.535 10 C 0.045 3.955 11 C 0.208 3.792 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.328 4.328 21 C 0.523 3.477 22 O -0.557 6.557 23 N -0.458 5.458 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.249 0.751 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.011 0.989 34 H -0.028 1.028 35 H 0.265 0.735 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.917 19.150 4.418 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.051 4.051 3 C -0.345 4.345 4 S 0.515 5.485 5 C -0.089 4.089 6 N -0.244 5.244 7 C 0.109 3.891 8 C -0.029 4.029 9 N -0.260 5.260 10 C -0.104 4.104 11 C 0.083 3.917 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.358 4.358 21 C 0.328 3.672 22 O -0.439 6.439 23 N -0.168 5.168 24 H 0.107 0.893 25 H 0.140 0.860 26 H 0.087 0.913 27 H 0.265 0.735 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.029 0.971 34 H -0.010 1.010 35 H 0.073 0.927 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.358 20.197 4.396 25.168 hybrid contribution -1.397 -2.418 -0.392 2.820 sum -15.755 17.779 4.004 24.090 Atomic orbital electron populations 1.20959 0.84391 1.05689 1.04781 1.20048 0.98292 0.83176 1.03570 1.25573 0.95322 1.03501 1.10082 1.85330 1.03342 0.83927 1.75949 1.27016 0.81391 1.04485 0.96006 1.68046 1.33077 0.98251 1.25064 1.21311 0.92436 0.90941 0.84391 1.21048 0.94275 0.92726 0.94886 1.61971 1.09481 1.53137 1.01397 1.22163 0.95494 0.97971 0.94741 1.19434 0.87715 0.87738 0.96839 1.21446 1.08026 1.18207 1.08302 0.92108 1.25860 0.99217 0.94734 0.99632 1.70081 1.27356 1.22806 1.37097 0.85349 0.78335 0.78114 0.78900 1.18933 1.20355 1.20424 1.22619 0.92283 1.00306 1.20543 1.17249 0.89747 0.81061 0.79161 1.90880 1.15493 1.83511 1.53988 1.45221 1.07579 1.09674 1.54342 0.89337 0.86032 0.91253 0.73472 0.88883 0.91689 0.92713 0.91897 0.95989 0.97068 1.01037 0.92659 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.40 71.23 0.67 -0.77 16 2 C 0.06 1.01 6.60 41.79 0.28 1.28 16 3 C -0.21 -2.17 10.79 67.89 0.73 -1.43 16 4 S 0.26 4.21 23.37 -56.49 -1.32 2.89 16 5 C 0.28 7.49 8.32 179.40 1.49 8.98 16 6 N -0.52 -17.50 10.36 -182.44 -1.89 -19.39 16 7 C 0.24 8.24 5.17 42.38 0.22 8.45 16 8 C 0.10 3.68 5.37 85.55 0.46 4.14 16 9 N -0.54 -23.82 4.74 -931.64 -4.42 -28.24 16 10 C 0.04 1.81 9.18 127.69 1.17 2.98 16 11 C 0.21 11.10 4.72 85.55 0.40 11.50 16 12 C -0.52 -29.69 8.46 25.60 0.22 -29.47 16 13 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 16 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.33 -10.56 9.67 22.53 0.22 -10.34 16 21 C 0.52 16.79 7.50 84.34 0.63 17.43 16 22 O -0.56 -19.52 14.79 -5.65 -0.08 -19.60 16 23 N -0.46 -12.17 2.82 -467.53 -1.32 -13.49 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.12 0.78 8.10 -2.39 -0.02 0.76 16 26 H 0.07 1.51 5.92 -2.38 -0.01 1.50 16 27 H 0.25 0.00 8.06 -2.91 -0.02 -0.02 16 28 H 0.09 3.46 7.93 -2.38 -0.02 3.44 16 29 H 0.07 2.21 7.89 -2.38 -0.02 2.19 16 30 H 0.05 2.03 7.28 -2.39 -0.02 2.01 16 31 H 0.06 2.72 6.76 -2.39 -0.02 2.70 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.01 0.64 7.93 -2.39 -0.02 0.62 16 34 H -0.03 -1.59 8.12 -2.39 -0.02 -1.61 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.17 4.94 7.98 -2.91 -0.02 4.91 16 Total: -1.00 -73.37 318.59 1.34 -72.03 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.10 Total: 1.51 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.96 Total: 13.43 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -7.34 Total: -116.69 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.08 Total: -19.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.32 Total: 2.89 kcal Total: -73.37 1.34 -72.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.781 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds