Wall clock time and date at job start Tue Mar 31 2020 07:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46976 * 2 1 4 4 N 1.46510 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00161 * 275.32487 * 4 3 2 6 6 H 1.08001 * 119.99649 * 37.64913 * 5 4 3 7 7 C 1.38814 * 120.00316 * 217.64957 * 5 4 3 8 8 N 1.31615 * 119.99840 * 21.23013 * 7 5 4 9 9 Si 1.86797 * 119.99894 * 201.22995 * 7 5 4 10 10 H 1.48502 * 109.47228 * 60.00204 * 9 7 5 11 11 H 1.48502 * 109.46768 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47387 * 300.00025 * 9 7 5 13 13 C 1.46505 * 119.99888 * 95.32992 * 4 3 2 14 14 C 1.50705 * 109.46787 * 270.00230 * 13 4 3 15 15 N 1.30050 * 126.16696 * 269.99813 * 14 13 4 16 16 O 1.21286 * 110.53137 * 179.70336 * 15 14 13 17 17 C 1.34274 * 109.68381 * 0.47013 * 16 15 14 18 18 C 1.47416 * 126.69364 * 179.79845 * 17 16 15 19 19 C 1.44334 * 123.33259 * 359.69162 * 18 17 16 20 20 C 1.32927 * 112.98867 * 180.02562 * 19 18 17 21 21 S 1.75538 * 110.34723 * 0.02562 * 20 19 18 22 22 C 1.34833 * 123.32443 * 179.71274 * 18 17 16 23 23 N 1.32330 * 106.60236 * 359.53995 * 17 16 15 24 24 H 1.09003 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47598 * 300.00575 * 1 2 3 26 26 H 1.09007 * 109.46519 * 60.00671 * 1 2 3 27 27 H 1.08995 * 109.47598 * 239.99425 * 2 1 3 28 28 H 1.09007 * 109.46519 * 119.99328 * 2 1 3 29 29 H 1.08997 * 109.47708 * 60.00042 * 3 2 1 30 30 H 1.09004 * 109.47458 * 299.99128 * 3 2 1 31 31 H 0.96999 * 120.00167 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.47302 * 149.99929 * 13 4 3 33 33 H 1.08994 * 109.47022 * 29.99319 * 13 4 3 34 34 H 1.08000 * 123.50588 * 0.02562 * 19 18 17 35 35 H 1.07997 * 124.82529 * 180.26375 * 20 19 18 36 36 H 1.07993 * 124.51926 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3326 1.1817 6 1 3.8176 0.6861 1.9629 7 6 5.3605 2.0521 1.3749 8 7 5.6020 3.1234 0.6494 9 14 6.5939 1.5000 2.6645 10 1 7.0642 0.1283 2.3444 11 1 7.7508 2.4310 2.6736 12 1 5.9470 1.5021 4.0011 13 6 4.2381 1.5601 -1.2624 14 6 4.4894 0.1857 -1.8272 15 7 5.5264 -0.5629 -1.5918 16 8 5.4354 -1.6153 -2.1878 17 6 4.2943 -1.6373 -2.8951 18 6 3.8129 -2.7324 -3.7565 19 6 4.5415 -3.9620 -3.9579 20 6 3.9192 -4.8065 -4.7743 21 16 2.4044 -4.1145 -5.3292 22 6 2.6484 -2.6843 -4.4346 23 7 3.6837 -0.4863 -2.6636 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 6.4206 3.6260 0.7841 32 1 5.1904 2.0596 -1.0846 33 1 3.6493 2.1421 -1.9713 34 1 5.4932 -4.1739 -3.4935 35 1 4.2907 -5.7814 -5.0532 36 1 1.9626 -1.8503 -4.4146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:38 Heat of formation + Delta-G solvation = 115.865578 kcal Electronic energy + Delta-G solvation = -21128.975002 eV Core-core repulsion = 17936.911305 eV Total energy + Delta-G solvation = -3192.063698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.72436 -37.87815 -36.54379 -34.78053 -33.01888 -31.96712 -30.61808 -29.58254 -27.04523 -25.58956 -25.13414 -22.90442 -22.30397 -21.39412 -20.20586 -19.25410 -18.03873 -17.45275 -16.80323 -16.38717 -15.75860 -14.94267 -14.33022 -13.91740 -13.78334 -13.40691 -13.37879 -13.17995 -12.96342 -12.76551 -12.43871 -11.72801 -11.62153 -11.41962 -11.19595 -11.15052 -10.95125 -10.75939 -10.71816 -10.54067 -10.37868 -10.12722 -10.05211 -9.91343 -9.49497 -9.10315 -8.53482 -8.23909 -6.73108 -5.90462 -3.47696 0.61771 1.35262 1.57400 1.70192 2.64018 3.20649 3.37675 3.41162 3.42437 3.48043 4.16623 4.45664 4.74605 4.98209 5.14615 5.30738 5.34159 5.45426 5.58420 5.70637 5.78137 5.83254 5.94711 6.07057 6.08790 6.28612 6.47095 6.49297 6.54737 6.64098 6.68816 6.79943 6.97454 7.18629 7.34946 7.76710 8.41247 8.98237 9.06363 9.69393 10.26227 11.12293 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.004676 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.390005 B = 5987.024577 C = 6896.325366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.568 5.568 5 C -0.266 4.266 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.280 1.280 13 C 0.221 3.779 14 C 0.181 3.819 15 N -0.375 5.375 16 O 0.070 5.930 17 C 0.202 3.798 18 C -0.038 4.038 19 C -0.105 4.105 20 C -0.231 4.231 21 S 0.180 5.820 22 C -0.191 4.191 23 N -0.467 5.467 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 -13.397 -12.237 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.287 5.287 5 C -0.395 4.395 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.526 5.526 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.091 3.909 14 C -0.095 4.095 15 N -0.083 5.083 16 O 0.013 5.987 17 C -0.018 4.018 18 C -0.054 4.054 19 C -0.135 4.135 20 C -0.365 4.365 21 S 0.444 5.556 22 C -0.331 4.331 23 N -0.203 5.203 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.789 -13.146 -12.640 19.460 hybrid contribution 1.855 -0.048 1.634 2.472 sum -4.934 -13.194 -11.006 17.876 Atomic orbital electron populations 1.21687 0.97178 1.00267 1.00996 1.22119 0.93962 1.00980 1.01534 1.20961 0.84328 0.93136 0.99158 1.43700 0.99787 1.83695 1.01492 1.18929 1.06283 1.20850 0.93458 0.92205 1.25161 1.00423 0.94229 0.98068 1.69929 1.25820 1.14560 1.42255 0.86433 0.80942 0.78578 0.81288 1.20567 1.21362 1.20580 1.19608 1.01746 0.83210 0.86295 1.28047 0.85453 1.03124 0.92839 1.74676 1.23795 0.94095 1.15768 1.85403 1.36897 1.31767 1.44653 1.25656 0.85996 0.94355 0.95800 1.17238 0.95727 0.92079 1.00342 1.21264 1.01294 0.91579 0.99337 1.25478 1.00086 1.05029 1.05949 1.83059 1.19977 1.06976 1.45616 1.25187 1.01034 1.04612 1.02220 1.72160 1.28550 1.02953 1.16629 0.93978 0.93267 0.93323 0.92390 0.93000 0.93287 0.94297 0.93133 0.86266 0.92254 0.82737 0.81143 0.80468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.15 -2.87 6.23 -26.73 -0.17 -3.04 16 3 C 0.15 3.27 5.72 -4.04 -0.02 3.24 16 4 N -0.57 -14.41 2.42 -174.60 -0.42 -14.83 16 5 C -0.27 -7.37 9.45 -15.06 -0.14 -7.52 16 6 H 0.06 1.68 7.92 -52.49 -0.42 1.27 16 7 C 0.02 0.62 4.96 -17.43 -0.09 0.54 16 8 N -0.88 -25.28 11.47 55.49 0.64 -24.64 16 9 Si 0.90 22.22 29.60 -169.99 -5.03 17.18 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.22 5.42 5.95 -5.19 -0.03 5.39 16 14 C 0.18 4.17 7.62 -156.57 -1.19 2.98 16 15 N -0.38 -8.81 12.14 31.24 0.38 -8.43 16 16 O 0.07 1.42 11.33 16.46 0.19 1.60 16 17 C 0.20 3.66 8.14 -13.92 -0.11 3.55 16 18 C -0.04 -0.52 5.94 -104.97 -0.62 -1.15 16 19 C -0.10 -1.14 10.37 -39.02 -0.40 -1.55 16 20 C -0.23 -1.95 11.14 28.90 0.32 -1.62 16 21 S 0.18 1.50 23.03 -107.50 -2.48 -0.98 16 22 C -0.19 -2.24 10.67 29.52 0.32 -1.92 16 23 N -0.47 -9.52 10.55 -10.17 -0.11 -9.62 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.20 7.02 -51.93 -0.36 0.84 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.04 0.80 7.83 -51.93 -0.41 0.39 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 32 H 0.12 3.26 5.51 -51.93 -0.29 2.97 16 33 H 0.06 1.36 7.86 -51.93 -0.41 0.95 16 34 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.18 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -30.78 327.25 -8.08 -38.85 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.40 Total: -1.11 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.78 Total: -2.97 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.49 Total: -57.52 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.18 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.78 -8.08 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.720 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds