Wall clock time and date at job start Tue Mar 31 2020 07:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46976 * 2 1 4 4 N 1.46510 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00161 * 275.32487 * 4 3 2 6 6 H 1.08001 * 119.99649 * 37.64913 * 5 4 3 7 7 C 1.38814 * 120.00316 * 217.64957 * 5 4 3 8 8 N 1.31615 * 119.99840 * 21.23013 * 7 5 4 9 9 Si 1.86797 * 119.99894 * 201.22995 * 7 5 4 10 10 H 1.48502 * 109.47228 * 60.00204 * 9 7 5 11 11 H 1.48502 * 109.46768 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47387 * 300.00025 * 9 7 5 13 13 C 1.46505 * 119.99888 * 95.32992 * 4 3 2 14 14 C 1.50705 * 109.46787 * 270.00230 * 13 4 3 15 15 N 1.30050 * 126.16696 * 269.99813 * 14 13 4 16 16 O 1.21286 * 110.53137 * 179.70336 * 15 14 13 17 17 C 1.34274 * 109.68381 * 0.47013 * 16 15 14 18 18 C 1.47416 * 126.69364 * 179.79845 * 17 16 15 19 19 C 1.44334 * 123.33259 * 359.69162 * 18 17 16 20 20 C 1.32927 * 112.98867 * 180.02562 * 19 18 17 21 21 S 1.75538 * 110.34723 * 0.02562 * 20 19 18 22 22 C 1.34833 * 123.32443 * 179.71274 * 18 17 16 23 23 N 1.32330 * 106.60236 * 359.53995 * 17 16 15 24 24 H 1.09003 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47598 * 300.00575 * 1 2 3 26 26 H 1.09007 * 109.46519 * 60.00671 * 1 2 3 27 27 H 1.08995 * 109.47598 * 239.99425 * 2 1 3 28 28 H 1.09007 * 109.46519 * 119.99328 * 2 1 3 29 29 H 1.08997 * 109.47708 * 60.00042 * 3 2 1 30 30 H 1.09004 * 109.47458 * 299.99128 * 3 2 1 31 31 H 0.96999 * 120.00167 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.47302 * 149.99929 * 13 4 3 33 33 H 1.08994 * 109.47022 * 29.99319 * 13 4 3 34 34 H 1.08000 * 123.50588 * 0.02562 * 19 18 17 35 35 H 1.07997 * 124.82529 * 180.26375 * 20 19 18 36 36 H 1.07993 * 124.51926 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3326 1.1817 6 1 3.8176 0.6861 1.9629 7 6 5.3605 2.0521 1.3749 8 7 5.6020 3.1234 0.6494 9 14 6.5939 1.5000 2.6645 10 1 7.0642 0.1283 2.3444 11 1 7.7508 2.4310 2.6736 12 1 5.9470 1.5021 4.0011 13 6 4.2381 1.5601 -1.2624 14 6 4.4894 0.1857 -1.8272 15 7 5.5264 -0.5629 -1.5918 16 8 5.4354 -1.6153 -2.1878 17 6 4.2943 -1.6373 -2.8951 18 6 3.8129 -2.7324 -3.7565 19 6 4.5415 -3.9620 -3.9579 20 6 3.9192 -4.8065 -4.7743 21 16 2.4044 -4.1145 -5.3292 22 6 2.6484 -2.6843 -4.4346 23 7 3.6837 -0.4863 -2.6636 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 6.4206 3.6260 0.7841 32 1 5.1904 2.0596 -1.0846 33 1 3.6493 2.1421 -1.9713 34 1 5.4932 -4.1739 -3.4935 35 1 4.2907 -5.7814 -5.0532 36 1 1.9626 -1.8503 -4.4146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:37 Heat of formation + Delta-G solvation = 97.216404 kcal Electronic energy + Delta-G solvation = -21129.783691 eV Core-core repulsion = 17936.911305 eV Total energy + Delta-G solvation = -3192.872386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.36840 -38.78864 -38.39100 -36.40281 -34.76630 -33.56934 -32.44216 -30.56542 -28.87174 -27.43740 -26.35072 -24.62043 -23.64920 -22.82343 -21.93158 -20.42669 -19.27337 -19.03339 -18.54049 -17.76644 -17.13773 -16.78197 -16.05850 -15.73217 -15.30101 -14.97315 -14.55974 -14.30374 -14.03904 -13.85877 -13.67851 -13.41789 -13.29049 -13.11771 -12.81778 -12.75714 -12.62098 -12.42311 -12.30038 -12.13751 -11.95525 -11.94678 -11.79432 -11.45119 -11.12021 -10.62145 -9.95258 -9.20519 -8.76510 -7.99674 -5.61331 -0.43957 0.47965 0.56410 0.91177 1.19149 1.37650 1.42836 1.48260 1.87671 2.07695 2.41568 2.76188 3.13568 3.36516 3.62690 3.87587 4.17123 4.18964 4.34861 4.40169 4.52477 4.57829 4.69132 4.77585 4.81280 4.89946 4.94289 5.06197 5.13296 5.18442 5.20290 5.28436 5.34642 5.36090 5.55522 5.57817 6.32987 6.99679 7.38200 7.66126 8.20225 8.99791 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.004676 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.390005 B = 5987.024577 C = 6896.325366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 C 0.148 3.852 4 N -0.582 5.582 5 C -0.275 4.275 6 H 0.049 0.951 7 C -0.018 4.018 8 N -0.908 5.908 9 Si 0.951 3.049 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.228 3.772 14 C 0.172 3.828 15 N -0.411 5.411 16 O 0.071 5.929 17 C 0.223 3.777 18 C -0.078 4.078 19 C -0.124 4.124 20 C -0.217 4.217 21 S 0.264 5.736 22 C -0.199 4.199 23 N -0.483 5.483 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.257 0.743 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.159 0.841 35 H 0.207 0.793 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 -15.986 -13.813 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.174 4.174 3 C 0.024 3.976 4 N -0.303 5.303 5 C -0.405 4.405 6 H 0.067 0.933 7 C -0.217 4.217 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.216 1.216 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.099 3.901 14 C -0.104 4.104 15 N -0.122 5.122 16 O 0.013 5.987 17 C 0.004 3.996 18 C -0.095 4.095 19 C -0.153 4.153 20 C -0.352 4.352 21 S 0.529 5.471 22 C -0.339 4.339 23 N -0.218 5.218 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.177 0.823 35 H 0.224 0.776 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.308 -15.748 -14.230 22.793 hybrid contribution 2.179 0.568 1.902 2.947 sum -6.129 -15.180 -12.328 20.494 Atomic orbital electron populations 1.21608 0.93641 1.01794 1.02116 1.21943 0.96928 0.98779 0.99732 1.21076 0.82540 0.94667 0.99360 1.43855 1.01151 1.84160 1.01086 1.19016 1.06984 1.20390 0.94136 0.93321 1.25752 1.01665 0.94340 0.99955 1.70024 1.26054 1.15356 1.43578 0.85613 0.79208 0.77453 0.79889 1.21631 1.20845 1.19351 1.19273 1.00347 0.84153 0.86369 1.27636 0.86185 1.02766 0.93792 1.74625 1.24830 0.95270 1.17427 1.85334 1.37785 1.30604 1.44937 1.26485 0.84377 0.94521 0.94173 1.17498 0.97645 0.92397 1.01968 1.21288 1.02001 0.91037 1.00973 1.25950 0.99655 1.05729 1.03869 1.82880 1.18477 1.03407 1.42338 1.25463 1.00070 1.06472 1.01922 1.72101 1.28592 1.03901 1.17180 0.92249 0.92401 0.91946 0.93636 0.95296 0.93892 0.93072 0.93326 0.89273 0.91416 0.82312 0.77607 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.13 -5.27 6.23 30.59 0.19 -5.08 16 3 C 0.15 6.55 5.72 86.38 0.49 7.04 16 4 N -0.58 -30.49 2.42 -706.32 -1.71 -32.20 16 5 C -0.28 -15.76 9.45 84.03 0.79 -14.96 16 6 H 0.05 2.84 7.92 -2.91 -0.02 2.82 16 7 C -0.02 -1.04 4.96 84.86 0.42 -0.62 16 8 N -0.91 -53.47 11.47 21.65 0.25 -53.22 16 9 Si 0.95 46.67 29.60 68.60 2.03 48.70 16 10 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.23 11.64 5.95 85.63 0.51 12.15 16 14 C 0.17 8.20 7.62 138.53 1.06 9.26 16 15 N -0.41 -20.07 12.14 -58.34 -0.71 -20.78 16 16 O 0.07 2.93 11.33 68.95 0.78 3.71 16 17 C 0.22 8.19 8.14 87.15 0.71 8.90 16 18 C -0.08 -2.07 5.94 -20.09 -0.12 -2.18 16 19 C -0.12 -2.44 10.37 22.65 0.23 -2.20 16 20 C -0.22 -2.76 11.14 66.65 0.74 -2.02 16 21 S 0.26 3.31 23.03 -56.49 -1.30 2.01 16 22 C -0.20 -4.25 10.67 67.04 0.72 -3.53 16 23 N -0.48 -20.07 10.55 -302.52 -3.19 -23.26 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.04 1.89 7.02 -2.39 -0.02 1.87 16 28 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.05 2.10 7.83 -2.38 -0.02 2.08 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.09 5.12 5.51 -2.39 -0.01 5.11 16 33 H 0.07 3.22 7.86 -2.39 -0.02 3.20 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -69.26 327.25 3.70 -65.56 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.09 Total: 5.95 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.46 Total: 3.53 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.36 Total: -129.46 kcal Atomic # 8 Polarization: 2.93 SS G_CDS: 0.78 Total: 3.71 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.30 Total: 2.01 kcal Total: -69.26 3.70 -65.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.776 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds