Wall clock time and date at job start Tue Mar 31 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75350 * 124.37187 * 2 1 4 4 C 1.75881 * 92.15370 * 179.97438 * 3 2 1 5 5 N 1.35024 * 130.81335 * 180.25467 * 4 3 2 6 6 C 1.29984 * 121.69972 * 180.21365 * 5 4 3 7 7 C 1.50704 * 119.06435 * 179.76436 * 6 5 4 8 8 N 1.46498 * 109.47053 * 359.72254 * 7 6 5 9 9 C 1.46499 * 119.99739 * 270.00201 * 8 7 6 10 10 C 1.36940 * 119.99792 * 90.00541 * 8 7 6 11 11 H 1.07990 * 120.00186 * 22.35580 * 10 8 7 12 12 C 1.38813 * 119.99420 * 202.35472 * 10 8 7 13 13 N 1.31617 * 120.00160 * 11.44235 * 12 10 8 14 14 Si 1.86807 * 119.99465 * 191.44239 * 12 10 8 15 15 H 1.48496 * 109.47293 * 90.00151 * 14 12 10 16 16 H 1.48495 * 109.46885 * 210.00070 * 14 12 10 17 17 H 1.48498 * 109.46944 * 329.99960 * 14 12 10 18 18 N 1.35791 * 121.86840 * 359.47583 * 6 5 4 19 19 H 0.96994 * 119.81650 * 180.25616 * 18 6 5 20 20 C 1.34747 * 120.36982 * 0.28796 * 18 6 5 21 21 O 1.21886 * 120.64900 * 180.02562 * 20 18 6 22 22 C 1.39190 * 109.62404 * 0.02562 * 4 3 2 23 23 C 1.32030 * 124.37493 * 179.97438 * 2 1 3 24 24 C 1.50698 * 122.59707 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47258 * 270.03558 * 1 2 3 26 26 H 1.08999 * 109.47453 * 30.04101 * 1 2 3 27 27 H 1.09003 * 109.46844 * 150.03959 * 1 2 3 28 28 H 1.08994 * 109.46863 * 119.72570 * 7 6 5 29 29 H 1.08998 * 109.46533 * 239.72219 * 7 6 5 30 30 H 1.09001 * 109.47213 * 94.11205 * 9 8 7 31 31 H 1.09009 * 109.46986 * 214.10861 * 9 8 7 32 32 H 1.08997 * 109.47244 * 334.10374 * 9 8 7 33 33 H 0.97007 * 119.99755 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.47185 * 270.02432 * 24 23 2 35 35 H 1.08999 * 109.47424 * 30.02467 * 24 23 2 36 36 H 1.09003 * 109.47396 * 150.02188 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4473 0.0000 4 6 3.9850 0.5096 0.0008 5 7 5.2764 0.9037 0.0057 6 6 6.2525 0.0453 0.0012 7 6 7.6722 0.5509 0.0017 8 7 7.6687 2.0159 0.0009 9 6 7.6677 2.7476 -1.2683 10 6 7.6666 2.7012 1.1865 11 1 8.0230 2.2235 2.0870 12 6 7.2062 4.0101 1.2306 13 7 6.5672 4.5181 0.1982 14 14 7.4938 5.0503 2.7554 15 1 8.7855 5.7714 2.6263 16 1 6.3902 6.0334 2.8992 17 1 7.5343 4.1729 3.9527 18 7 6.0292 -1.2942 0.0019 19 1 6.7801 -1.9082 0.0023 20 6 4.7705 -1.7750 0.0015 21 8 4.5643 -2.9763 0.0026 22 6 3.6815 -0.8488 0.0004 23 6 2.2525 -1.0897 0.0005 24 6 1.6630 -2.4766 0.0005 25 1 -0.3634 0.0006 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 8.1863 0.1892 0.8922 29 1 8.1872 0.1882 -0.8877 30 1 6.6422 2.9905 -1.5468 31 1 8.2418 3.6676 -1.1577 32 1 8.1183 2.1293 -2.0445 33 1 6.2452 5.4326 0.2292 34 1 1.5200 -2.8106 1.0282 35 1 0.7022 -2.4631 -0.5140 36 1 2.3402 -3.1594 -0.5126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120455496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:28 Heat of formation + Delta-G solvation = 42.702925 kcal Electronic energy + Delta-G solvation = -21323.016524 eV Core-core repulsion = 18127.780255 eV Total energy + Delta-G solvation = -3195.236268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11648 -37.47292 -37.20996 -35.37050 -33.44273 -31.70532 -30.55988 -29.14439 -27.53487 -25.91593 -25.38882 -23.98418 -22.61986 -20.72078 -19.57655 -18.13180 -17.56096 -16.90646 -16.65989 -15.81866 -15.63248 -14.82129 -14.30492 -14.10837 -13.72894 -13.60507 -13.39844 -13.17424 -12.71752 -12.63361 -12.49091 -12.20146 -11.86756 -11.73483 -11.59706 -11.07994 -10.92487 -10.70526 -10.54264 -10.45374 -10.07109 -9.99777 -9.80156 -9.66029 -9.16896 -8.59519 -8.16268 -7.51051 -6.91397 -5.76476 -3.24351 0.70675 1.53914 1.96974 2.24199 2.56345 3.06509 3.36618 3.42797 3.43698 3.97701 4.42896 4.55508 4.72280 5.07400 5.18821 5.31836 5.34318 5.49142 5.53169 5.56108 5.64397 5.79092 5.84047 5.90081 5.90621 6.09271 6.12434 6.32010 6.64509 6.66043 6.84070 6.87972 7.33156 7.70951 7.80049 8.16098 8.26491 8.43777 9.14162 9.74616 10.21373 11.27236 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.005695 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.843707 B = 4915.108920 C = 5906.325275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.228 4.228 3 S 0.188 5.812 4 C 0.109 3.891 5 N -0.447 5.447 6 C 0.377 3.623 7 C 0.184 3.816 8 N -0.560 5.560 9 C 0.162 3.838 10 C -0.262 4.262 11 H 0.070 0.930 12 C 0.017 3.983 13 N -0.889 5.889 14 Si 0.902 3.098 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.280 1.280 18 N -0.644 5.644 19 H 0.414 0.586 20 C 0.560 3.440 21 O -0.550 6.550 22 C -0.265 4.265 23 C -0.034 4.034 24 C -0.095 4.095 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.050 0.950 32 H -0.004 1.004 33 H 0.253 0.747 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -8.941 -2.161 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.344 4.344 3 S 0.453 5.547 4 C -0.126 4.126 5 N -0.168 5.168 6 C 0.103 3.897 7 C 0.050 3.950 8 N -0.278 5.278 9 C 0.018 3.982 10 C -0.391 4.391 11 H 0.087 0.913 12 C -0.183 4.183 13 N -0.531 5.531 14 Si 0.732 3.268 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.206 1.206 18 N -0.286 5.286 19 H 0.252 0.748 20 C 0.355 3.645 21 O -0.429 6.429 22 C -0.281 4.281 23 C -0.046 4.046 24 C -0.154 4.154 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.048 -6.874 -2.200 10.088 hybrid contribution 0.388 -1.776 0.902 2.029 sum -6.660 -8.650 -1.297 10.994 Atomic orbital electron populations 1.20260 0.87628 1.02809 1.02464 1.23750 1.00083 0.96092 1.14523 1.84257 0.91203 1.05238 1.73978 1.24138 0.97863 0.93611 0.97025 1.68214 0.95145 1.32379 1.21053 1.26847 1.00985 0.77253 0.84601 1.20525 0.85272 0.87903 1.01292 1.43899 1.82291 0.97344 1.04247 1.20905 1.00059 0.93784 0.83450 1.19095 1.36940 0.95299 0.87771 0.91263 1.25031 0.97367 0.98745 0.97178 1.70087 1.38533 1.14758 1.29738 0.86315 0.77329 0.80339 0.82816 1.21380 1.21686 1.20561 1.44967 1.10029 1.09837 1.63817 0.74783 1.16693 0.82386 0.88248 0.77217 1.90843 1.84203 1.15235 1.52655 1.20557 0.94481 0.92818 1.20281 1.19012 0.89649 0.96216 0.99682 1.20576 1.00210 0.92305 1.02313 0.91051 0.91481 0.90657 0.89727 0.90306 0.94393 0.93087 0.98545 0.93711 0.91359 0.91823 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.23 -3.45 6.39 -36.23 -0.23 -3.68 16 3 S 0.19 3.30 23.20 -107.50 -2.49 0.81 16 4 C 0.11 2.21 7.70 -15.79 -0.12 2.09 16 5 N -0.45 -9.75 9.52 -8.77 -0.08 -9.83 16 6 C 0.38 6.96 7.70 -155.15 -1.19 5.76 16 7 C 0.18 3.19 6.15 -5.19 -0.03 3.16 16 8 N -0.56 -12.68 2.29 -182.50 -0.42 -13.10 16 9 C 0.16 3.70 9.01 59.85 0.54 4.24 16 10 C -0.26 -6.64 9.66 -15.06 -0.15 -6.78 16 11 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 12 C 0.02 0.45 5.13 -17.43 -0.09 0.37 16 13 N -0.89 -24.59 10.59 55.49 0.59 -24.00 16 14 Si 0.90 21.11 29.57 -169.99 -5.03 16.08 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.64 -10.32 5.26 -11.73 -0.06 -10.38 16 19 H 0.41 5.07 8.77 -40.82 -0.36 4.71 16 20 C 0.56 10.42 7.81 -14.44 -0.11 10.31 16 21 O -0.55 -10.85 16.00 5.02 0.08 -10.77 16 22 C -0.26 -5.05 6.06 -105.07 -0.64 -5.68 16 23 C -0.03 -0.57 5.96 -103.90 -0.62 -1.19 16 24 C -0.10 -1.32 9.46 36.00 0.34 -0.98 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.70 6.52 -51.93 -0.34 0.36 16 28 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 30 H 0.04 0.97 7.42 -51.93 -0.39 0.58 16 31 H 0.05 1.25 7.18 -51.92 -0.37 0.88 16 32 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 33 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 36 H 0.08 1.22 6.62 -51.93 -0.34 0.88 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -31.66 316.10 -8.78 -40.44 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.18 Total: -1.19 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.94 Total: 7.18 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.02 Total: -57.32 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.49 Total: 0.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.66 -8.78 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120455496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.146 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds