Wall clock time and date at job start Tue Mar 31 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75350 * 124.37187 * 2 1 4 4 C 1.75881 * 92.15370 * 179.97438 * 3 2 1 5 5 N 1.35024 * 130.81335 * 180.25467 * 4 3 2 6 6 C 1.29984 * 121.69972 * 180.21365 * 5 4 3 7 7 C 1.50704 * 119.06435 * 179.76436 * 6 5 4 8 8 N 1.46498 * 109.47053 * 359.72254 * 7 6 5 9 9 C 1.46499 * 119.99739 * 270.00201 * 8 7 6 10 10 C 1.36940 * 119.99792 * 90.00541 * 8 7 6 11 11 H 1.07990 * 120.00186 * 22.35580 * 10 8 7 12 12 C 1.38813 * 119.99420 * 202.35472 * 10 8 7 13 13 N 1.31617 * 120.00160 * 11.44235 * 12 10 8 14 14 Si 1.86807 * 119.99465 * 191.44239 * 12 10 8 15 15 H 1.48496 * 109.47293 * 90.00151 * 14 12 10 16 16 H 1.48495 * 109.46885 * 210.00070 * 14 12 10 17 17 H 1.48498 * 109.46944 * 329.99960 * 14 12 10 18 18 N 1.35791 * 121.86840 * 359.47583 * 6 5 4 19 19 H 0.96994 * 119.81650 * 180.25616 * 18 6 5 20 20 C 1.34747 * 120.36982 * 0.28796 * 18 6 5 21 21 O 1.21886 * 120.64900 * 180.02562 * 20 18 6 22 22 C 1.39190 * 109.62404 * 0.02562 * 4 3 2 23 23 C 1.32030 * 124.37493 * 179.97438 * 2 1 3 24 24 C 1.50698 * 122.59707 * 0.02562 * 23 2 1 25 25 H 1.09003 * 109.47258 * 270.03558 * 1 2 3 26 26 H 1.08999 * 109.47453 * 30.04101 * 1 2 3 27 27 H 1.09003 * 109.46844 * 150.03959 * 1 2 3 28 28 H 1.08994 * 109.46863 * 119.72570 * 7 6 5 29 29 H 1.08998 * 109.46533 * 239.72219 * 7 6 5 30 30 H 1.09001 * 109.47213 * 94.11205 * 9 8 7 31 31 H 1.09009 * 109.46986 * 214.10861 * 9 8 7 32 32 H 1.08997 * 109.47244 * 334.10374 * 9 8 7 33 33 H 0.97007 * 119.99755 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.47185 * 270.02432 * 24 23 2 35 35 H 1.08999 * 109.47424 * 30.02467 * 24 23 2 36 36 H 1.09003 * 109.47396 * 150.02188 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4473 0.0000 4 6 3.9850 0.5096 0.0008 5 7 5.2764 0.9037 0.0057 6 6 6.2525 0.0453 0.0012 7 6 7.6722 0.5509 0.0017 8 7 7.6687 2.0159 0.0009 9 6 7.6677 2.7476 -1.2683 10 6 7.6666 2.7012 1.1865 11 1 8.0230 2.2235 2.0870 12 6 7.2062 4.0101 1.2306 13 7 6.5672 4.5181 0.1982 14 14 7.4938 5.0503 2.7554 15 1 8.7855 5.7714 2.6263 16 1 6.3902 6.0334 2.8992 17 1 7.5343 4.1729 3.9527 18 7 6.0292 -1.2942 0.0019 19 1 6.7801 -1.9082 0.0023 20 6 4.7705 -1.7750 0.0015 21 8 4.5643 -2.9763 0.0026 22 6 3.6815 -0.8488 0.0004 23 6 2.2525 -1.0897 0.0005 24 6 1.6630 -2.4766 0.0005 25 1 -0.3634 0.0006 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 8.1863 0.1892 0.8922 29 1 8.1872 0.1882 -0.8877 30 1 6.6422 2.9905 -1.5468 31 1 8.2418 3.6676 -1.1577 32 1 8.1183 2.1293 -2.0445 33 1 6.2452 5.4326 0.2292 34 1 1.5200 -2.8106 1.0282 35 1 0.7022 -2.4631 -0.5140 36 1 2.3402 -3.1594 -0.5126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120455496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:28 Heat of formation + Delta-G solvation = 23.059402 kcal Electronic energy + Delta-G solvation = -21323.868331 eV Core-core repulsion = 18127.780255 eV Total energy + Delta-G solvation = -3196.088075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53921 -38.95115 -38.51081 -37.07493 -34.81870 -33.45708 -31.97125 -30.31085 -28.98121 -27.78798 -26.70902 -25.39559 -24.18441 -22.34749 -20.85687 -19.52259 -18.99272 -18.63748 -18.13006 -17.18865 -17.07331 -16.62146 -15.72366 -15.48516 -15.23721 -15.05670 -14.89334 -14.44231 -14.27286 -13.83206 -13.61826 -13.50200 -13.27600 -13.20901 -12.78871 -12.74478 -12.68843 -12.42800 -12.09884 -11.93815 -11.82613 -11.78107 -11.27493 -10.98306 -10.62883 -10.55405 -9.55572 -8.87597 -8.78130 -7.72662 -5.20954 -0.69454 0.19045 0.60431 0.94540 1.19033 1.48506 1.51166 1.57416 1.72198 2.53603 2.56095 3.11569 3.39290 3.47447 3.73881 3.84011 4.06218 4.17286 4.38969 4.46803 4.60378 4.64128 4.71114 4.78438 4.82898 4.89707 4.93381 5.07186 5.17784 5.38811 5.44691 5.57020 5.59132 5.73861 5.90258 6.37605 6.77488 6.96691 7.22711 7.90463 8.32353 9.29487 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.005695 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.843707 B = 4915.108920 C = 5906.325275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.201 4.201 3 S 0.162 5.838 4 C 0.077 3.923 5 N -0.492 5.492 6 C 0.380 3.620 7 C 0.183 3.817 8 N -0.576 5.576 9 C 0.178 3.822 10 C -0.254 4.254 11 H 0.074 0.926 12 C -0.037 4.037 13 N -0.920 5.920 14 Si 0.953 3.047 15 H -0.284 1.284 16 H -0.304 1.304 17 H -0.274 1.274 18 N -0.625 5.625 19 H 0.433 0.567 20 C 0.556 3.444 21 O -0.563 6.563 22 C -0.273 4.273 23 C -0.060 4.060 24 C -0.087 4.087 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.001 0.999 31 H 0.023 0.977 32 H 0.033 0.967 33 H 0.242 0.758 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -10.904 -1.894 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.318 4.318 3 S 0.428 5.572 4 C -0.157 4.157 5 N -0.213 5.213 6 C 0.106 3.894 7 C 0.051 3.949 8 N -0.294 5.294 9 C 0.033 3.967 10 C -0.385 4.385 11 H 0.092 0.908 12 C -0.234 4.234 13 N -0.565 5.565 14 Si 0.783 3.217 15 H -0.211 1.211 16 H -0.231 1.231 17 H -0.199 1.199 18 N -0.269 5.269 19 H 0.275 0.725 20 C 0.351 3.649 21 O -0.444 6.444 22 C -0.291 4.291 23 C -0.070 4.070 24 C -0.146 4.146 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.020 0.980 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.553 -8.892 -1.921 11.824 hybrid contribution 0.524 -1.285 0.797 1.600 sum -7.029 -10.178 -1.124 12.420 Atomic orbital electron populations 1.20491 0.84200 1.04574 1.04100 1.24244 1.01832 0.93969 1.11715 1.84260 0.91456 1.07446 1.74069 1.24352 0.97957 0.94597 0.98840 1.68118 0.96368 1.34342 1.22489 1.26482 1.00647 0.77762 0.84500 1.20822 0.84643 0.84869 1.04528 1.43943 1.82712 0.99551 1.03198 1.20589 0.97676 0.93685 0.84710 1.19377 1.34960 0.95397 0.88739 0.90789 1.25630 0.98337 1.00166 0.99224 1.70260 1.40612 1.14321 1.31291 0.85492 0.76624 0.78890 0.80683 1.21089 1.23077 1.19898 1.44580 1.10117 1.09316 1.62845 0.72508 1.16738 0.82999 0.88007 0.77191 1.90836 1.84517 1.15561 1.53467 1.20960 0.96090 0.92484 1.19521 1.19347 0.88754 0.97972 1.00957 1.20574 1.01042 0.90037 1.02937 0.89314 0.90247 0.88276 0.87166 0.86200 0.98039 0.95803 0.94816 0.94810 0.90676 0.88672 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.99 71.24 0.71 -0.66 16 2 C -0.20 -5.72 6.39 24.76 0.16 -5.56 16 3 S 0.16 5.74 23.20 -56.49 -1.31 4.43 16 4 C 0.08 3.15 7.70 84.43 0.65 3.80 16 5 N -0.49 -21.53 9.52 -181.66 -1.73 -23.26 16 6 C 0.38 13.52 7.70 138.04 1.06 14.58 16 7 C 0.18 5.89 6.15 85.63 0.53 6.41 16 8 N -0.58 -25.56 2.29 -731.32 -1.67 -27.24 16 9 C 0.18 8.14 9.01 127.77 1.15 9.29 16 10 C -0.25 -12.82 9.66 84.03 0.81 -12.01 16 11 H 0.07 3.59 7.84 -2.92 -0.02 3.57 16 12 C -0.04 -1.99 5.13 84.86 0.44 -1.55 16 13 N -0.92 -52.65 10.59 21.65 0.23 -52.42 16 14 Si 0.95 44.07 29.57 68.60 2.03 46.10 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 N -0.62 -18.94 5.26 -309.18 -1.63 -20.57 16 19 H 0.43 9.49 8.77 -92.71 -0.81 8.67 16 20 C 0.56 20.10 7.81 85.43 0.67 20.77 16 21 O -0.56 -21.50 16.00 -4.94 -0.08 -21.58 16 22 C -0.27 -10.27 6.06 -20.16 -0.12 -10.39 16 23 C -0.06 -1.89 5.96 -19.08 -0.11 -2.00 16 24 C -0.09 -2.21 9.46 71.24 0.67 -1.53 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.40 6.52 -2.39 -0.02 1.38 16 28 H 0.11 3.02 8.03 -2.39 -0.02 3.00 16 29 H 0.12 2.90 7.86 -2.39 -0.02 2.88 16 30 H 0.00 0.06 7.42 -2.39 -0.02 0.05 16 31 H 0.02 1.18 7.18 -2.38 -0.02 1.16 16 32 H 0.03 1.25 7.85 -2.39 -0.02 1.23 16 33 H 0.24 13.78 8.31 -92.70 -0.77 13.01 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.75 6.50 -2.39 -0.02 1.74 16 36 H 0.06 1.79 6.62 -2.39 -0.02 1.77 16 Total: -1.00 -70.71 316.10 2.77 -67.94 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.32 Total: 5.43 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 6.61 Total: 21.16 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.80 Total: -123.48 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.08 Total: -21.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.31 Total: 4.43 kcal Total: -70.71 2.77 -67.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120455496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.001 kcal (2) G-P(sol) polarization free energy of solvation -70.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds