Wall clock time and date at job start Tue Mar 31 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47102 * 2 1 4 4 N 1.30936 * 122.91119 * 90.01840 * 3 2 1 5 5 C 1.29422 * 117.37063 * 179.97438 * 4 3 2 6 6 S 1.70958 * 110.38841 * 0.02562 * 5 4 3 7 7 C 1.35671 * 122.89924 * 270.00492 * 3 2 1 8 8 C 1.46682 * 126.13064 * 0.02562 * 7 3 2 9 9 O 1.21683 * 120.00188 * 352.02370 * 8 7 3 10 10 N 1.34775 * 119.99360 * 172.02622 * 8 7 3 11 11 C 1.46496 * 120.00777 * 2.33228 * 10 8 7 12 12 C 1.50694 * 109.47308 * 82.49075 * 11 10 8 13 13 H 1.08007 * 120.00035 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00132 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00026 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47192 * 89.99591 * 16 14 12 18 18 H 1.48500 * 109.47057 * 209.99651 * 16 14 12 19 19 H 1.48500 * 109.46914 * 329.99587 * 16 14 12 20 20 C 1.46505 * 119.99406 * 182.32939 * 10 8 7 21 21 C 1.53003 * 109.46853 * 94.93964 * 20 10 8 22 22 C 1.47201 * 109.46825 * 179.97438 * 21 20 10 23 23 N 8.00264 * 80.12366 * 280.31450 * 2 1 3 24 24 H 1.09001 * 109.47384 * 299.99788 * 1 2 3 25 25 H 1.08997 * 109.47143 * 60.00519 * 1 2 3 26 26 H 1.09002 * 109.46776 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47333 * 239.99504 * 2 1 3 28 28 H 1.09002 * 109.47587 * 119.99593 * 2 1 3 29 29 H 1.07998 * 124.80916 * 180.02562 * 5 4 3 30 30 H 1.08993 * 109.47419 * 202.50152 * 11 10 8 31 31 H 1.09009 * 109.46820 * 322.49359 * 11 10 8 32 32 H 0.97001 * 120.00263 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.46808 * 214.93499 * 20 10 8 34 34 H 1.08994 * 109.47084 * 334.93734 * 20 10 8 35 35 H 1.08999 * 109.47033 * 299.99397 * 21 20 10 36 36 H 1.09003 * 109.47273 * 60.00154 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2698 2.0914 1.0992 5 6 2.6996 3.3058 0.9743 6 16 2.8450 3.7190 -0.6782 7 6 2.2779 2.1156 -1.1391 8 6 2.1023 1.6209 -2.5088 9 8 1.8422 0.4482 -2.7035 10 7 2.2290 2.4653 -3.5516 11 6 2.5924 3.8655 -3.3205 12 6 4.0871 3.9776 -3.1649 13 1 4.7048 3.0941 -3.2320 14 6 4.6662 5.2080 -2.9371 15 7 5.9707 5.3058 -2.8018 16 14 3.5979 6.7359 -2.8204 17 1 3.1863 6.9455 -1.4091 18 1 4.3675 7.9151 -3.2919 19 1 2.3907 6.5616 -3.6674 20 6 2.0035 1.9827 -4.9163 21 6 0.5581 2.2713 -5.3269 22 6 0.3317 1.7870 -6.6984 23 7 0.1574 1.4116 -7.7566 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.9334 3.9648 1.7973 30 1 2.2689 4.4695 -4.1681 31 1 2.1049 4.2224 -2.4131 32 1 6.3781 6.1713 -2.6411 33 1 2.6837 2.4922 -5.5989 34 1 2.1852 0.9088 -4.9566 35 1 -0.1221 1.7618 -4.6444 36 1 0.3764 3.3453 -5.2866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121737391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:13 Heat of formation + Delta-G solvation = 20.803545 kcal Electronic energy + Delta-G solvation = -21415.715614 eV Core-core repulsion = 18219.529717 eV Total energy + Delta-G solvation = -3196.185897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30020 -40.14811 -37.91215 -36.91250 -34.84056 -34.19498 -33.00850 -30.47588 -29.76823 -27.05326 -25.21648 -24.61065 -23.97733 -21.62451 -19.39999 -19.29897 -19.15991 -18.43991 -17.49663 -17.21491 -16.38376 -15.97607 -15.84926 -15.66854 -15.27920 -14.99755 -14.82533 -14.58730 -14.44898 -14.27225 -13.91435 -13.62888 -13.54860 -13.13878 -13.01423 -12.70565 -12.66399 -12.48167 -12.09597 -12.01633 -11.83879 -11.69979 -11.64716 -10.89042 -10.80481 -10.20470 -10.15509 -9.76549 -9.37339 -8.27937 -6.31171 -0.49211 0.59570 1.03868 1.43997 1.48419 1.54371 1.58392 1.68383 1.80262 2.12526 2.32786 2.36211 3.07286 3.16144 3.40390 3.70691 4.08585 4.13339 4.20604 4.27472 4.51447 4.53571 4.56251 4.63179 4.75947 4.76531 4.86386 5.03139 5.11577 5.20180 5.33633 5.35898 5.48636 5.58618 6.14292 6.43622 6.56831 6.69703 6.87489 7.15513 7.27970 8.86986 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.009368 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.969766 B = 2988.059265 C = 5305.204262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 C 0.123 3.877 4 N -0.506 5.506 5 C -0.054 4.054 6 S 0.300 5.700 7 C -0.330 4.330 8 C 0.599 3.401 9 O -0.559 6.559 10 N -0.589 5.589 11 C 0.200 3.800 12 C -0.534 4.534 13 H 0.036 0.964 14 C 0.046 3.954 15 N -0.926 5.926 16 Si 0.892 3.108 17 H -0.243 1.243 18 H -0.287 1.287 19 H -0.224 1.224 20 C 0.122 3.878 21 C -0.032 4.032 22 C 0.245 3.755 23 N -0.490 5.490 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.219 0.781 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.271 0.729 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 0.364 4.389 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.019 4.019 4 N -0.221 5.221 5 C -0.345 4.345 6 S 0.563 5.437 7 C -0.455 4.455 8 C 0.388 3.612 9 O -0.441 6.441 10 N -0.318 5.318 11 C 0.076 3.924 12 C -0.575 4.575 13 H 0.055 0.945 14 C -0.156 4.156 15 N -0.564 5.564 16 Si 0.713 3.287 17 H -0.167 1.167 18 H -0.213 1.213 19 H -0.146 1.146 20 C -0.002 4.002 21 C -0.073 4.073 22 C -0.072 4.072 23 N -0.168 5.168 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.235 0.765 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.930 0.148 2.828 11.291 hybrid contribution 0.450 0.154 0.548 0.726 sum -10.480 0.303 3.377 11.015 Atomic orbital electron populations 1.21521 0.92911 1.02669 1.01202 1.20374 0.97547 0.88241 1.03671 1.20836 0.96844 0.98623 0.85567 1.66226 1.16711 1.07474 1.31718 1.29876 1.00387 0.96954 1.07260 1.85836 1.52726 1.09398 0.95705 1.25525 1.19584 1.01581 0.98831 1.16836 0.76084 0.84997 0.83288 1.90673 1.51710 1.16444 1.85308 1.47651 1.67096 1.11322 1.05767 1.20090 0.94807 0.79112 0.98377 1.21347 0.91332 0.94593 1.50229 0.94527 1.25504 0.95548 1.01352 0.93180 1.70009 1.11842 1.26353 1.48180 0.86494 0.81034 0.79392 0.81803 1.16697 1.21295 1.14593 1.21300 0.95140 1.01616 0.82156 1.19746 0.98601 1.05102 0.83818 1.29207 0.91780 0.91716 0.94539 1.81245 1.10304 1.11246 1.14036 0.92814 0.93540 0.90403 0.89263 0.90312 0.76478 0.90321 0.93844 0.91989 0.88891 0.89912 0.85730 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.89 71.98 0.71 -2.48 16 2 C -0.06 -1.80 5.85 29.85 0.17 -1.63 16 3 C 0.12 4.35 6.04 42.10 0.25 4.60 16 4 N -0.51 -17.44 10.50 -190.40 -2.00 -19.44 16 5 C -0.05 -1.68 12.22 130.60 1.60 -0.08 16 6 S 0.30 10.41 15.59 -56.49 -0.88 9.53 16 7 C -0.33 -12.14 6.24 23.88 0.15 -11.99 16 8 C 0.60 21.99 7.55 86.45 0.65 22.65 16 9 O -0.56 -21.45 13.76 -4.29 -0.06 -21.51 16 10 N -0.59 -19.53 2.48 -830.89 -2.06 -21.59 16 11 C 0.20 6.99 3.84 85.63 0.33 7.32 16 12 C -0.53 -24.18 7.60 25.60 0.19 -23.99 16 13 H 0.04 2.00 8.06 -2.91 -0.02 1.98 16 14 C 0.05 2.16 5.12 84.66 0.43 2.59 16 15 N -0.93 -48.97 13.96 21.45 0.30 -48.67 16 16 Si 0.89 32.64 26.82 68.60 1.84 34.48 16 17 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 18 H -0.29 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.22 -6.93 6.54 99.48 0.65 -6.28 16 20 C 0.12 3.27 5.40 86.38 0.47 3.73 16 21 C -0.03 -0.61 6.03 28.79 0.17 -0.43 16 22 C 0.24 5.82 15.43 89.44 1.38 7.20 16 23 N -0.49 -14.59 18.54 20.01 0.37 -14.21 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 3.02 5.86 -2.39 -0.01 3.00 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 30 H 0.08 2.40 7.08 -2.39 -0.02 2.38 16 31 H 0.04 1.49 3.92 -20.96 -0.08 1.41 16 32 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16 34 H 0.08 2.39 7.25 -2.39 -0.02 2.37 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.15 16 36 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -61.23 319.09 5.01 -56.23 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.98 Total: 17.69 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.52 Total: 7.48 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.39 Total: -103.91 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 1.84 Total: 34.48 kcal Atomic # 16 Polarization: 10.41 SS G_CDS: -0.88 Total: 9.53 kcal Total: -61.23 5.01 -56.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121737391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal (2) G-P(sol) polarization free energy of solvation -61.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds