Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46938 * 2 1 4 4 C 1.52991 * 109.47532 * 120.00340 * 2 1 3 5 5 C 1.50707 * 109.46951 * 240.00360 * 2 1 3 6 6 N 1.29376 * 124.70132 * 59.70129 * 5 2 1 7 7 C 1.30943 * 117.46463 * 179.76548 * 6 5 2 8 8 C 1.36778 * 113.91961 * 0.51263 * 7 6 5 9 9 C 1.46568 * 126.17698 * 179.75260 * 8 7 6 10 10 O 1.21724 * 120.00001 * 341.98749 * 9 8 7 11 11 N 1.34774 * 119.99927 * 161.98292 * 9 8 7 12 12 C 1.36892 * 120.00205 * 183.81435 * 11 9 8 13 13 H 1.07996 * 119.99855 * 11.26187 * 12 11 9 14 14 C 1.39009 * 120.00148 * 191.26123 * 12 11 9 15 15 N 1.31404 * 119.99568 * 32.30987 * 14 12 11 16 16 Si 1.86799 * 120.00119 * 212.31198 * 14 12 11 17 17 H 1.48495 * 109.47141 * 89.99810 * 16 14 12 18 18 H 1.48498 * 109.46883 * 210.00185 * 16 14 12 19 19 H 1.48506 * 109.46868 * 329.99908 * 16 14 12 20 20 C 1.46501 * 119.99836 * 3.81687 * 11 9 8 21 21 C 1.47200 * 109.47494 * 89.01681 * 20 11 9 22 22 N 5.86954 * 110.20908 * 185.74618 * 2 1 3 23 23 S 1.70922 * 124.70132 * 239.99336 * 5 2 1 24 24 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 60.00189 * 1 2 3 26 26 H 1.08994 * 109.46976 * 299.99336 * 1 2 3 27 27 H 1.08994 * 109.46744 * 60.00522 * 3 2 1 28 28 H 1.09005 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47465 * 300.00093 * 3 2 1 30 30 H 1.08999 * 109.47404 * 60.00027 * 4 2 1 31 31 H 1.09002 * 109.47666 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47339 * 299.99796 * 4 2 1 33 33 H 1.07998 * 123.03727 * 180.27820 * 7 6 5 34 34 H 0.97002 * 119.99000 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47038 * 209.01464 * 20 11 9 36 36 H 1.08999 * 109.47050 * 329.00974 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 2.0323 -0.7104 -1.2306 6 7 1.7719 -0.3516 -2.4460 7 6 2.2872 -1.0706 -3.4115 8 6 3.0357 -2.1292 -2.9758 9 6 3.7271 -3.1063 -3.8216 10 8 3.4143 -3.2277 -4.9917 11 7 4.7094 -3.8702 -3.3039 12 6 5.4080 -4.7268 -4.1114 13 1 5.3031 -4.6637 -5.1844 14 6 6.2524 -5.6779 -3.5503 15 7 5.9611 -6.2086 -2.3840 16 14 7.8011 -6.2012 -4.4541 17 1 8.9295 -5.3237 -4.0518 18 1 8.1225 -7.6098 -4.1107 19 1 7.5824 -6.0863 -5.9185 20 6 5.0294 -3.7838 -1.8769 21 6 4.1987 -4.7415 -1.1288 22 7 3.5576 -5.4805 -0.5515 23 16 3.0192 -2.1058 -1.2139 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6768 -1.7489 1.2491 31 1 3.1301 -0.7217 1.2489 32 1 1.6768 -0.2075 2.1392 33 1 2.1318 -0.8500 -4.4572 34 1 6.5502 -6.8725 -1.9927 35 1 6.0826 -4.0209 -1.7257 36 1 4.8297 -2.7734 -1.5202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126531921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = 44.218553 kcal Electronic energy + Delta-G solvation = -21291.750213 eV Core-core repulsion = 18096.579668 eV Total energy + Delta-G solvation = -3195.170546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.63305 -38.82039 -36.53994 -35.85413 -34.48187 -32.23850 -29.64670 -27.80166 -27.47578 -27.31741 -26.05580 -24.56887 -21.48698 -20.45489 -18.33309 -18.07822 -17.77143 -16.68762 -15.94779 -15.54231 -14.83630 -14.71526 -14.31892 -14.17144 -13.88301 -13.72026 -13.48564 -13.16692 -12.76348 -12.32573 -12.25872 -12.14946 -11.87919 -11.75002 -11.64174 -11.45054 -11.32369 -11.09796 -11.07412 -10.96596 -10.85008 -10.57868 -10.51252 -9.48457 -9.24967 -8.92129 -8.77569 -8.48422 -8.26027 -6.82259 -4.10390 0.72477 1.62131 2.05174 2.90879 3.07683 3.11734 3.16254 3.46249 3.77274 3.92729 3.98003 4.17347 4.53697 4.69613 4.74511 4.84474 4.98907 5.04390 5.39793 5.43633 5.50121 5.54026 5.67529 5.74163 5.77477 5.81194 5.83443 5.91113 6.01911 6.12896 6.21161 6.22687 6.58082 7.23215 7.62569 8.03344 8.08107 8.56370 8.75770 8.92157 9.51161 10.22856 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.005081 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.426932 B = 5509.547196 C = 6087.553426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.013 3.987 3 C -0.132 4.132 4 C -0.155 4.155 5 C 0.013 3.987 6 N -0.472 5.472 7 C 0.080 3.920 8 C -0.253 4.253 9 C 0.509 3.491 10 O -0.563 6.563 11 N -0.420 5.420 12 C -0.316 4.316 13 H 0.120 0.880 14 C 0.038 3.962 15 N -0.845 5.845 16 Si 0.925 3.075 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.206 3.794 21 C 0.237 3.763 22 N -0.446 5.446 23 S 0.166 5.834 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.280 0.720 35 H 0.132 0.868 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 11.565 8.261 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.009 3.991 3 C -0.191 4.191 4 C -0.213 4.213 5 C -0.261 4.261 6 N -0.185 5.185 7 C -0.077 4.077 8 C -0.377 4.377 9 C 0.298 3.702 10 O -0.448 6.448 11 N -0.138 5.138 12 C -0.443 4.443 13 H 0.138 0.862 14 C -0.170 4.170 15 N -0.481 5.481 16 Si 0.750 3.250 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.076 3.924 21 C -0.082 4.082 22 N -0.126 5.126 23 S 0.425 5.575 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.198 0.802 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.918 10.097 9.386 14.091 hybrid contribution 0.901 -0.118 -1.455 1.715 sum -2.017 9.979 7.931 12.905 Atomic orbital electron populations 1.21825 0.92677 1.02300 1.02393 1.19146 0.96316 0.95017 0.88621 1.21821 1.01164 0.93718 1.02396 1.22035 1.01811 1.00838 0.96639 1.27553 1.01650 1.00454 0.96484 1.65975 1.22881 1.31060 0.98553 1.22192 0.95317 0.90509 0.99638 1.26445 1.10877 1.04817 0.95594 1.16465 0.81713 0.84658 0.87362 1.90696 1.66029 1.71647 1.16428 1.43632 1.29621 1.34999 1.05497 1.19842 1.19651 1.12518 0.92265 0.86232 1.25384 0.99999 0.94807 0.96768 1.70007 1.35017 1.23946 1.19125 0.85933 0.80979 0.77637 0.80451 1.19688 1.20859 1.18830 1.19023 0.99620 0.92817 0.80921 1.28793 0.92875 0.93429 0.93105 1.80887 1.11444 1.09551 1.10677 1.84409 1.43976 1.25869 1.03243 0.92580 0.91535 0.91962 0.92010 0.92499 0.91549 0.91781 0.91735 0.90946 0.80226 0.90953 0.85083 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.45 37.16 0.31 -1.12 16 2 C 0.01 0.15 0.99 -155.66 -0.15 -0.01 16 3 C -0.13 -1.34 8.45 37.16 0.31 -1.02 16 4 C -0.16 -1.56 7.53 37.15 0.28 -1.28 16 5 C 0.01 0.20 5.77 -13.31 -0.08 0.12 16 6 N -0.47 -7.97 10.48 -11.25 -0.12 -8.09 16 7 C 0.08 1.47 11.21 -18.46 -0.21 1.26 16 8 C -0.25 -5.04 6.17 -36.75 -0.23 -5.27 16 9 C 0.51 12.10 7.56 -12.90 -0.10 12.01 16 10 O -0.56 -15.15 16.55 5.17 0.09 -15.06 16 11 N -0.42 -9.88 2.58 -119.46 -0.31 -10.19 16 12 C -0.32 -7.93 9.31 -15.01 -0.14 -8.07 16 13 H 0.12 3.17 7.41 -52.49 -0.39 2.78 16 14 C 0.04 0.90 4.63 -17.45 -0.08 0.82 16 15 N -0.85 -20.40 9.77 55.50 0.54 -19.86 16 16 Si 0.93 18.39 29.66 -169.99 -5.04 13.35 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C 0.21 4.12 4.76 -6.83 -0.03 4.08 16 21 C 0.24 5.17 11.48 -20.76 -0.24 4.93 16 22 N -0.45 -10.33 18.54 42.15 0.78 -9.55 16 23 S 0.17 2.73 15.40 -107.50 -1.66 1.07 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 31 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.18 3.14 8.06 -52.49 -0.42 2.71 16 34 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 35 H 0.13 2.55 6.66 -51.93 -0.35 2.20 16 36 H 0.09 1.56 4.25 -22.77 -0.10 1.46 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -29.58 318.10 -5.44 -35.01 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.17 Total: 2.06 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.35 Total: 6.46 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.90 Total: -47.69 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.35 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.66 Total: 1.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.58 -5.44 -35.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126531921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.233 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds