Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46938 * 2 1 4 4 C 1.52991 * 109.47532 * 120.00340 * 2 1 3 5 5 C 1.50707 * 109.46951 * 240.00360 * 2 1 3 6 6 N 1.29376 * 124.70132 * 59.70129 * 5 2 1 7 7 C 1.30943 * 117.46463 * 179.76548 * 6 5 2 8 8 C 1.36778 * 113.91961 * 0.51263 * 7 6 5 9 9 C 1.46568 * 126.17698 * 179.75260 * 8 7 6 10 10 O 1.21724 * 120.00001 * 341.98749 * 9 8 7 11 11 N 1.34774 * 119.99927 * 161.98292 * 9 8 7 12 12 C 1.36892 * 120.00205 * 183.81435 * 11 9 8 13 13 H 1.07996 * 119.99855 * 11.26187 * 12 11 9 14 14 C 1.39009 * 120.00148 * 191.26123 * 12 11 9 15 15 N 1.31404 * 119.99568 * 32.30987 * 14 12 11 16 16 Si 1.86799 * 120.00119 * 212.31198 * 14 12 11 17 17 H 1.48495 * 109.47141 * 89.99810 * 16 14 12 18 18 H 1.48498 * 109.46883 * 210.00185 * 16 14 12 19 19 H 1.48506 * 109.46868 * 329.99908 * 16 14 12 20 20 C 1.46501 * 119.99836 * 3.81687 * 11 9 8 21 21 C 1.47200 * 109.47494 * 89.01681 * 20 11 9 22 22 N 5.86954 * 110.20908 * 185.74618 * 2 1 3 23 23 S 1.70922 * 124.70132 * 239.99336 * 5 2 1 24 24 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 60.00189 * 1 2 3 26 26 H 1.08994 * 109.46976 * 299.99336 * 1 2 3 27 27 H 1.08994 * 109.46744 * 60.00522 * 3 2 1 28 28 H 1.09005 * 109.46965 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47465 * 300.00093 * 3 2 1 30 30 H 1.08999 * 109.47404 * 60.00027 * 4 2 1 31 31 H 1.09002 * 109.47666 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47339 * 299.99796 * 4 2 1 33 33 H 1.07998 * 123.03727 * 180.27820 * 7 6 5 34 34 H 0.97002 * 119.99000 * 179.97438 * 15 14 12 35 35 H 1.09004 * 109.47038 * 209.01464 * 20 11 9 36 36 H 1.08999 * 109.47050 * 329.00974 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 2.0323 -0.7104 -1.2306 6 7 1.7719 -0.3516 -2.4460 7 6 2.2872 -1.0706 -3.4115 8 6 3.0357 -2.1292 -2.9758 9 6 3.7271 -3.1063 -3.8216 10 8 3.4143 -3.2277 -4.9917 11 7 4.7094 -3.8702 -3.3039 12 6 5.4080 -4.7268 -4.1114 13 1 5.3031 -4.6637 -5.1844 14 6 6.2524 -5.6779 -3.5503 15 7 5.9611 -6.2086 -2.3840 16 14 7.8011 -6.2012 -4.4541 17 1 8.9295 -5.3237 -4.0518 18 1 8.1225 -7.6098 -4.1107 19 1 7.5824 -6.0863 -5.9185 20 6 5.0294 -3.7838 -1.8769 21 6 4.1987 -4.7415 -1.1288 22 7 3.5576 -5.4805 -0.5515 23 16 3.0192 -2.1058 -1.2139 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6768 -1.7489 1.2491 31 1 3.1301 -0.7217 1.2489 32 1 1.6768 -0.2075 2.1392 33 1 2.1318 -0.8500 -4.4572 34 1 6.5502 -6.8725 -1.9927 35 1 6.0826 -4.0209 -1.7257 36 1 4.8297 -2.7734 -1.5202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126531921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = 26.175609 kcal Electronic energy + Delta-G solvation = -21292.532614 eV Core-core repulsion = 18096.579668 eV Total energy + Delta-G solvation = -3195.952946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13229 -40.43580 -37.82278 -37.43630 -36.30214 -34.06366 -31.15598 -29.49176 -28.30225 -28.13116 -27.62069 -26.14723 -23.01563 -21.72582 -20.09111 -19.67557 -19.07683 -18.39032 -17.52383 -17.05341 -16.42382 -15.99270 -15.74537 -15.51142 -15.43582 -15.10688 -14.83067 -14.48984 -14.24790 -13.99424 -13.63258 -13.31661 -13.14934 -13.05418 -12.99540 -12.65965 -12.57613 -12.52917 -12.36959 -12.29938 -12.12432 -11.93915 -11.88077 -11.26402 -10.85607 -10.52381 -10.29935 -10.18066 -9.78796 -8.62580 -6.02096 -0.69903 0.19544 0.64471 1.32939 1.47280 1.55621 1.58511 1.76270 2.06703 2.20994 2.29761 2.76324 2.91791 3.05349 3.31596 3.74084 3.79521 3.98310 4.03498 4.16376 4.32035 4.39901 4.51625 4.72741 4.78002 4.88621 4.97775 5.00425 5.02368 5.12891 5.27780 5.37361 5.39697 5.44242 5.80444 6.20230 6.65875 6.81480 6.90823 7.10511 7.68829 8.42327 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.005081 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.426932 B = 5509.547196 C = 6087.553426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.006 3.994 3 C -0.129 4.129 4 C -0.157 4.157 5 C 0.041 3.959 6 N -0.485 5.485 7 C 0.098 3.902 8 C -0.298 4.298 9 C 0.504 3.496 10 O -0.609 6.609 11 N -0.431 5.431 12 C -0.356 4.356 13 H 0.092 0.908 14 C 0.018 3.982 15 N -0.866 5.866 16 Si 0.990 3.010 17 H -0.253 1.253 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.209 3.791 21 C 0.247 3.753 22 N -0.472 5.472 23 S 0.192 5.808 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.183 0.817 34 H 0.285 0.715 35 H 0.138 0.862 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 13.207 10.662 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 C -0.188 4.188 4 C -0.215 4.215 5 C -0.234 4.234 6 N -0.198 5.198 7 C -0.060 4.060 8 C -0.422 4.422 9 C 0.295 3.705 10 O -0.497 6.497 11 N -0.148 5.148 12 C -0.482 4.482 13 H 0.110 0.890 14 C -0.189 4.189 15 N -0.502 5.502 16 Si 0.812 3.188 17 H -0.178 1.178 18 H -0.206 1.206 19 H -0.199 1.199 20 C 0.080 3.920 21 C -0.072 4.072 22 N -0.152 5.152 23 S 0.452 5.548 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.200 0.800 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.748 11.730 11.823 16.880 hybrid contribution 0.674 -0.480 -2.098 2.255 sum -2.074 11.250 9.726 15.015 Atomic orbital electron populations 1.21845 0.91679 1.02030 1.03511 1.19514 0.97056 0.95891 0.87293 1.21828 1.01248 0.92294 1.03423 1.22097 1.02120 1.00418 0.96880 1.28488 0.98764 0.98756 0.97374 1.66111 1.23704 1.31083 0.98871 1.22376 0.93577 0.89675 1.00357 1.26066 1.12995 1.05485 0.97688 1.16978 0.81357 0.84889 0.87282 1.90636 1.67381 1.73106 1.18576 1.43723 1.29507 1.34869 1.06670 1.19706 1.22143 1.14770 0.91601 0.89006 1.26048 1.01426 0.93945 0.97455 1.70045 1.35704 1.24247 1.20169 0.84998 0.77777 0.77423 0.78581 1.17774 1.20629 1.19883 1.19246 0.99643 0.94014 0.79076 1.29101 0.92393 0.93101 0.92557 1.80877 1.12356 1.10303 1.11663 1.84172 1.44365 1.26192 1.00055 0.93557 0.92607 0.88749 0.88920 0.92420 0.92671 0.92780 0.91372 0.87843 0.80042 0.90500 0.84439 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.45 71.98 0.61 -1.81 16 2 C 0.01 0.12 0.99 -52.93 -0.05 0.07 16 3 C -0.13 -2.12 8.45 71.98 0.61 -1.51 16 4 C -0.16 -2.55 7.53 71.98 0.54 -2.01 16 5 C 0.04 1.15 5.77 88.47 0.51 1.66 16 6 N -0.48 -15.75 10.48 -189.50 -1.99 -17.74 16 7 C 0.10 3.59 11.21 84.48 0.95 4.53 16 8 C -0.30 -12.00 6.17 24.10 0.15 -11.85 16 9 C 0.50 24.92 7.56 86.42 0.65 25.57 16 10 O -0.61 -34.53 16.55 -4.43 -0.07 -34.60 16 11 N -0.43 -20.88 2.58 -650.07 -1.68 -22.56 16 12 C -0.36 -18.53 9.31 84.09 0.78 -17.75 16 13 H 0.09 5.19 7.41 -2.91 -0.02 5.17 16 14 C 0.02 0.83 4.63 84.94 0.39 1.23 16 15 N -0.87 -41.84 9.77 21.68 0.21 -41.63 16 16 Si 0.99 37.87 29.66 68.60 2.03 39.90 16 17 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 18 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 C 0.21 8.35 4.76 84.57 0.40 8.76 16 21 C 0.25 10.75 11.48 89.44 1.03 11.78 16 22 N -0.47 -21.78 18.54 20.01 0.37 -21.41 16 23 S 0.19 6.07 15.40 -56.49 -0.87 5.20 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.01 7.91 -2.39 -0.02 0.99 16 31 H 0.07 1.07 7.91 -2.39 -0.02 1.06 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.18 6.46 8.06 -2.91 -0.02 6.44 16 34 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 35 H 0.14 5.32 6.66 -2.39 -0.02 5.30 16 36 H 0.12 4.03 4.25 -20.93 -0.09 3.94 16 Total: -1.00 -65.83 318.10 5.61 -60.22 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.03 Total: 13.95 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.57 Total: 18.67 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.08 Total: -103.33 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.07 Total: -34.60 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -0.87 Total: 5.20 kcal Total: -65.83 5.61 -60.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126531921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.398 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds