Wall clock time and date at job start Tue Mar 31 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47378 * 318.56393 * 3 2 1 5 5 N 1.46904 * 109.46986 * 179.90113 * 4 3 2 6 6 C 1.46901 * 111.00038 * 298.16122 * 5 4 3 7 7 C 1.50701 * 109.46934 * 293.27221 * 6 5 4 8 8 H 1.07998 * 120.00193 * 354.98061 * 7 6 5 9 9 C 1.37871 * 119.99882 * 174.98152 * 7 6 5 10 10 N 1.31513 * 120.00226 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00014 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47268 * 60.00033 * 11 9 7 13 13 H 1.48504 * 109.47160 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47227 * 299.99582 * 11 9 7 15 15 C 1.46900 * 110.99848 * 62.11310 * 5 4 3 16 16 C 1.50703 * 109.47073 * 66.04912 * 15 5 4 17 17 C 1.32765 * 124.71769 * 90.00110 * 16 15 5 18 18 C 1.44419 * 113.08628 * 179.76995 * 17 16 15 19 19 C 1.47197 * 123.46471 * 180.31672 * 18 17 16 20 20 N 1.34769 * 120.00310 * 180.18250 * 19 18 17 21 21 O 1.21638 * 119.99656 * 0.18628 * 19 18 17 22 22 C 1.36015 * 113.07837 * 0.46041 * 18 17 16 23 23 S 1.70446 * 110.81279 * 359.55183 * 22 18 17 24 24 H 1.09001 * 109.46533 * 198.56600 * 3 2 1 25 25 H 1.09001 * 109.47160 * 78.56771 * 3 2 1 26 26 H 1.08994 * 109.47111 * 59.90695 * 4 3 2 27 27 H 1.08995 * 109.47003 * 299.89881 * 4 3 2 28 28 H 1.08996 * 109.47055 * 53.27191 * 6 5 4 29 29 H 1.08999 * 109.46866 * 173.27543 * 6 5 4 30 30 H 0.97006 * 120.00613 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.47485 * 306.04539 * 15 5 4 32 32 H 1.08999 * 109.47256 * 186.04303 * 15 5 4 33 33 H 1.08005 * 123.45706 * 0.02562 * 17 16 15 34 34 H 0.97001 * 119.99887 * 0.02562 * 20 19 18 35 35 H 0.97001 * 120.00467 * 179.97438 * 20 19 18 36 36 H 1.07996 * 124.58771 * 179.81026 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0805 0.9546 5 7 4.5876 -1.0814 0.9527 6 6 5.1121 -1.3974 -0.3825 7 6 4.7668 -2.8216 -0.7338 8 1 4.2849 -3.4560 -0.0046 9 6 5.0661 -3.3147 -1.9860 10 7 5.6525 -2.5421 -2.8741 11 14 4.6374 -5.0799 -2.4216 12 1 3.1707 -5.2778 -2.2993 13 1 5.0597 -5.3619 -3.8172 14 1 5.3405 -6.0032 -1.4951 15 6 5.1153 0.2017 1.4356 16 6 4.7588 0.3764 2.8894 17 6 5.5110 -0.0271 3.9062 18 6 4.9304 0.2726 5.1941 19 6 5.5741 -0.0673 6.4735 20 7 4.9672 0.2423 7.6364 21 8 6.6537 -0.6275 6.4812 22 6 3.7262 0.8984 5.1034 23 16 3.2910 1.1411 3.4734 24 1 2.9708 0.9750 0.3272 25 1 2.9714 -0.2029 -1.0073 26 1 2.7543 -2.0547 0.6284 27 1 2.7566 -0.8759 1.9622 28 1 4.6681 -0.7244 -1.1159 29 1 6.1952 -1.2748 -0.3857 30 1 5.8627 -2.8890 -3.7553 31 1 4.6808 1.0151 0.8546 32 1 6.1994 0.2140 1.3235 33 1 6.4618 -0.5246 3.7829 34 1 4.1061 0.6888 7.6302 35 1 5.3912 0.0180 8.4795 36 1 3.1289 1.2042 5.9497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152833661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:52 Heat of formation + Delta-G solvation = 22.790940 kcal Electronic energy + Delta-G solvation = -20399.917841 eV Core-core repulsion = 17203.818125 eV Total energy + Delta-G solvation = -3196.099717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74403 -38.23952 -36.69353 -35.86584 -33.90871 -32.75987 -31.21715 -29.90738 -27.12904 -25.44134 -24.88325 -23.57610 -21.14248 -19.91594 -19.14424 -18.16451 -17.45831 -16.98977 -16.47520 -16.08039 -15.50169 -14.86772 -14.74491 -14.55395 -14.37176 -13.89888 -13.71240 -13.18646 -13.04584 -12.60582 -12.50155 -12.18305 -12.05329 -11.93863 -11.64608 -11.40835 -11.14662 -10.93320 -10.78855 -10.64759 -10.30936 -10.10342 -9.97456 -9.89552 -9.38663 -8.81380 -8.51046 -8.40534 -7.48109 -6.11216 -4.12955 0.69699 1.49857 1.90806 2.05744 3.04029 3.07139 3.31090 3.32420 3.35639 3.38951 3.39105 4.26274 4.38238 4.61260 4.87387 4.93200 5.12177 5.25243 5.29698 5.35334 5.42272 5.60737 5.73174 5.83186 6.00298 6.18552 6.29733 6.40013 6.53892 6.58648 7.06543 7.13490 7.14436 7.67183 7.79961 7.90640 7.99972 8.11855 8.36362 8.94521 9.52504 10.98934 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.004438 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.709796 B = 6308.311556 C = 7495.331758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.224 3.776 3 C -0.075 4.075 4 C 0.066 3.934 5 N -0.520 5.520 6 C 0.186 3.814 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.113 3.887 16 C -0.171 4.171 17 C -0.077 4.077 18 C -0.154 4.154 19 C 0.583 3.417 20 N -0.854 5.854 21 O -0.537 6.537 22 C -0.224 4.224 23 S 0.181 5.819 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.399 0.601 35 H 0.404 0.596 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 10.596 15.302 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.065 4.065 5 N -0.243 5.243 6 C 0.062 3.938 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.017 4.017 16 C -0.288 4.288 17 C -0.106 4.106 18 C -0.173 4.173 19 C 0.368 3.632 20 N -0.418 5.418 21 O -0.414 6.414 22 C -0.362 4.362 23 S 0.448 5.552 24 H 0.113 0.887 25 H 0.143 0.857 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.173 0.827 34 H 0.227 0.773 35 H 0.234 0.766 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.403 10.521 14.511 18.721 hybrid contribution 0.862 -0.829 0.322 1.238 sum -4.541 9.693 14.833 18.292 Atomic orbital electron populations 1.81139 1.13080 1.09524 1.09794 1.29186 0.95183 0.92527 0.92428 1.20243 0.81819 1.03104 1.06568 1.22183 0.89174 0.98467 0.96634 1.62444 1.05055 1.26524 1.30259 1.19900 0.95708 0.96794 0.81384 1.21067 1.39511 0.96512 0.97866 0.91736 1.24933 0.95177 0.97814 0.96294 1.69920 1.41806 1.36091 1.05783 0.86601 0.78849 0.84906 0.77354 1.20267 1.21378 1.20094 1.20711 1.01455 0.92668 0.86887 1.24464 0.97975 1.06008 1.00386 1.21008 1.01534 0.99563 0.88461 1.20167 0.96061 1.06646 0.94413 1.17692 0.84340 0.77614 0.83602 1.43692 1.25374 1.64407 1.08320 1.90849 1.21177 1.41755 1.87649 1.25547 1.00554 1.06508 1.03595 1.83136 1.21171 1.55860 0.95078 0.88669 0.85719 0.88600 0.91690 0.97549 0.94902 0.92749 0.93750 0.88635 0.82659 0.77293 0.76558 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.98 18.54 42.15 0.78 -7.20 16 2 C 0.22 3.48 15.43 -20.76 -0.32 3.16 16 3 C -0.08 -1.07 5.05 -29.52 -0.15 -1.22 16 4 C 0.07 1.06 4.88 -3.82 -0.02 1.04 16 5 N -0.52 -9.26 4.69 -237.52 -1.11 -10.38 16 6 C 0.19 4.11 4.52 -4.97 -0.02 4.08 16 7 C -0.51 -12.92 8.39 -34.44 -0.29 -13.21 16 8 H 0.06 1.64 7.35 -52.49 -0.39 1.26 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -24.66 13.29 55.43 0.74 -23.92 16 11 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.11 1.62 5.22 -4.97 -0.03 1.60 16 16 C -0.17 -2.24 5.19 -36.18 -0.19 -2.43 16 17 C -0.08 -1.07 9.95 -39.03 -0.39 -1.46 16 18 C -0.15 -1.87 5.98 -104.63 -0.63 -2.49 16 19 C 0.58 7.28 8.06 -12.63 -0.10 7.18 16 20 N -0.85 -6.42 8.84 30.38 0.27 -6.16 16 21 O -0.54 -9.01 17.63 5.24 0.09 -8.92 16 22 C -0.22 -2.13 10.38 29.93 0.31 -1.82 16 23 S 0.18 1.89 21.47 -107.50 -2.31 -0.42 16 24 H 0.10 1.12 6.33 -51.93 -0.33 0.79 16 25 H 0.13 1.99 6.30 -51.93 -0.33 1.66 16 26 H 0.10 1.75 6.96 -51.93 -0.36 1.39 16 27 H 0.06 0.94 5.92 -51.93 -0.31 0.64 16 28 H 0.01 0.15 6.03 -51.93 -0.31 -0.16 16 29 H 0.03 0.79 7.92 -51.93 -0.41 0.37 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.04 0.57 6.07 -51.93 -0.32 0.25 16 32 H 0.10 1.39 7.92 -51.93 -0.41 0.98 16 33 H 0.16 2.31 8.06 -52.48 -0.42 1.89 16 34 H 0.40 1.80 7.33 -40.82 -0.30 1.50 16 35 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16 36 H 0.16 0.96 7.01 -52.49 -0.37 0.59 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -31.48 324.26 -7.34 -38.82 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.75 Total: 1.70 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.92 Total: -4.11 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.67 Total: -47.65 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.31 Total: -0.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.48 -7.34 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152833661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.609 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds