Wall clock time and date at job start Tue Mar 31 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47378 * 318.56393 * 3 2 1 5 5 N 1.46904 * 109.46986 * 179.90113 * 4 3 2 6 6 C 1.46901 * 111.00038 * 298.16122 * 5 4 3 7 7 C 1.50701 * 109.46934 * 293.27221 * 6 5 4 8 8 H 1.07998 * 120.00193 * 354.98061 * 7 6 5 9 9 C 1.37871 * 119.99882 * 174.98152 * 7 6 5 10 10 N 1.31513 * 120.00226 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00014 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47268 * 60.00033 * 11 9 7 13 13 H 1.48504 * 109.47160 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47227 * 299.99582 * 11 9 7 15 15 C 1.46900 * 110.99848 * 62.11310 * 5 4 3 16 16 C 1.50703 * 109.47073 * 66.04912 * 15 5 4 17 17 C 1.32765 * 124.71769 * 90.00110 * 16 15 5 18 18 C 1.44419 * 113.08628 * 179.76995 * 17 16 15 19 19 C 1.47197 * 123.46471 * 180.31672 * 18 17 16 20 20 N 1.34769 * 120.00310 * 180.18250 * 19 18 17 21 21 O 1.21638 * 119.99656 * 0.18628 * 19 18 17 22 22 C 1.36015 * 113.07837 * 0.46041 * 18 17 16 23 23 S 1.70446 * 110.81279 * 359.55183 * 22 18 17 24 24 H 1.09001 * 109.46533 * 198.56600 * 3 2 1 25 25 H 1.09001 * 109.47160 * 78.56771 * 3 2 1 26 26 H 1.08994 * 109.47111 * 59.90695 * 4 3 2 27 27 H 1.08995 * 109.47003 * 299.89881 * 4 3 2 28 28 H 1.08996 * 109.47055 * 53.27191 * 6 5 4 29 29 H 1.08999 * 109.46866 * 173.27543 * 6 5 4 30 30 H 0.97006 * 120.00613 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.47485 * 306.04539 * 15 5 4 32 32 H 1.08999 * 109.47256 * 186.04303 * 15 5 4 33 33 H 1.08005 * 123.45706 * 0.02562 * 17 16 15 34 34 H 0.97001 * 119.99887 * 0.02562 * 20 19 18 35 35 H 0.97001 * 120.00467 * 179.97438 * 20 19 18 36 36 H 1.07996 * 124.58771 * 179.81026 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0805 0.9546 5 7 4.5876 -1.0814 0.9527 6 6 5.1121 -1.3974 -0.3825 7 6 4.7668 -2.8216 -0.7338 8 1 4.2849 -3.4560 -0.0046 9 6 5.0661 -3.3147 -1.9860 10 7 5.6525 -2.5421 -2.8741 11 14 4.6374 -5.0799 -2.4216 12 1 3.1707 -5.2778 -2.2993 13 1 5.0597 -5.3619 -3.8172 14 1 5.3405 -6.0032 -1.4951 15 6 5.1153 0.2017 1.4356 16 6 4.7588 0.3764 2.8894 17 6 5.5110 -0.0271 3.9062 18 6 4.9304 0.2726 5.1941 19 6 5.5741 -0.0673 6.4735 20 7 4.9672 0.2423 7.6364 21 8 6.6537 -0.6275 6.4812 22 6 3.7262 0.8984 5.1034 23 16 3.2910 1.1411 3.4734 24 1 2.9708 0.9750 0.3272 25 1 2.9714 -0.2029 -1.0073 26 1 2.7543 -2.0547 0.6284 27 1 2.7566 -0.8759 1.9622 28 1 4.6681 -0.7244 -1.1159 29 1 6.1952 -1.2748 -0.3857 30 1 5.8627 -2.8890 -3.7553 31 1 4.6808 1.0151 0.8546 32 1 6.1994 0.2140 1.3235 33 1 6.4618 -0.5246 3.7829 34 1 4.1061 0.6888 7.6302 35 1 5.3912 0.0180 8.4795 36 1 3.1289 1.2042 5.9497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152833661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:52 Heat of formation + Delta-G solvation = -0.523450 kcal Electronic energy + Delta-G solvation = -20400.928829 eV Core-core repulsion = 17203.818125 eV Total energy + Delta-G solvation = -3197.110705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68940 -39.55601 -37.78336 -37.15627 -34.86427 -34.59424 -32.33772 -31.28955 -28.69276 -26.62759 -25.89971 -25.18065 -22.40357 -21.13437 -20.09573 -19.15266 -18.63753 -18.19898 -17.88682 -17.11209 -16.94881 -16.34144 -15.92663 -15.79850 -15.43923 -15.29290 -14.98560 -14.37679 -14.28812 -13.90783 -13.60757 -13.55631 -13.38128 -13.24097 -12.93965 -12.87740 -12.63352 -12.56014 -12.36062 -11.99461 -11.88896 -11.49269 -11.27446 -11.08286 -10.70826 -10.51796 -9.79081 -9.29283 -8.91559 -8.12405 -6.18796 -0.17409 0.60819 0.97903 1.03836 1.45906 1.47091 1.53839 1.77346 1.81045 2.38561 2.46161 2.63279 3.00075 3.22091 3.50519 3.79297 4.08676 4.15269 4.16255 4.21331 4.38021 4.48645 4.53483 4.77517 4.87001 4.93426 5.15910 5.25527 5.38140 5.41381 5.43488 5.74505 5.89950 6.14461 6.32549 6.45570 6.58922 6.66103 6.96678 7.33773 7.49998 8.96734 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.004438 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.709796 B = 6308.311556 C = 7495.331758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.244 3.756 3 C -0.064 4.064 4 C 0.070 3.930 5 N -0.532 5.532 6 C 0.200 3.800 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.114 3.886 16 C -0.192 4.192 17 C -0.092 4.092 18 C -0.180 4.180 19 C 0.580 3.420 20 N -0.827 5.827 21 O -0.594 6.594 22 C -0.195 4.195 23 S 0.227 5.773 24 H 0.127 0.873 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.003 0.997 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 11.862 16.961 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.073 4.073 3 C -0.106 4.106 4 C -0.060 4.060 5 N -0.255 5.255 6 C 0.074 3.926 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.185 4.185 10 N -0.568 5.568 11 Si 0.775 3.225 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.015 4.015 16 C -0.309 4.309 17 C -0.121 4.121 18 C -0.199 4.199 19 C 0.365 3.635 20 N -0.392 5.392 21 O -0.476 6.476 22 C -0.334 4.334 23 S 0.494 5.506 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.497 11.811 16.219 21.419 hybrid contribution 1.448 -1.154 -0.090 1.854 sum -6.048 10.657 16.130 20.256 Atomic orbital electron populations 1.81166 1.13950 1.10648 1.10729 1.29207 0.95056 0.91514 0.91506 1.20156 0.81014 1.04053 1.05335 1.22096 0.88009 0.97875 0.98060 1.62245 1.06199 1.29283 1.27727 1.19540 0.94207 0.95240 0.83570 1.21405 1.38490 0.98057 0.97579 0.92367 1.25604 0.95408 1.01006 0.96525 1.70014 1.43182 1.37515 1.06046 0.85750 0.78695 0.81102 0.76948 1.19743 1.21251 1.20049 1.20665 1.01052 0.91534 0.88243 1.24275 0.99995 1.07415 0.99191 1.21005 1.01120 0.99898 0.90111 1.20052 0.97405 1.08874 0.93561 1.17840 0.83775 0.77115 0.84799 1.43455 1.25634 1.62775 1.07311 1.90823 1.23672 1.44689 1.88419 1.26020 0.99226 1.03316 1.04795 1.82970 1.18351 1.54278 0.94982 0.85496 0.87191 0.91120 0.89668 0.97923 0.97414 0.92887 0.91597 0.89694 0.85213 0.75131 0.75483 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.13 18.54 20.01 0.37 -15.75 16 2 C 0.24 7.10 15.43 89.44 1.38 8.48 16 3 C -0.06 -1.71 5.05 28.79 0.15 -1.56 16 4 C 0.07 2.17 4.88 86.30 0.42 2.59 16 5 N -0.53 -18.95 4.69 -905.38 -4.24 -23.20 16 6 C 0.20 9.00 4.52 85.56 0.39 9.38 16 7 C -0.52 -26.55 8.39 25.60 0.21 -26.33 16 8 H 0.06 3.01 7.35 -2.91 -0.02 2.98 16 9 C 0.01 0.70 5.46 84.65 0.46 1.17 16 10 N -0.93 -51.76 13.29 21.44 0.28 -51.48 16 11 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.11 3.23 5.22 85.56 0.45 3.68 16 16 C -0.19 -4.79 5.19 24.51 0.13 -4.66 16 17 C -0.09 -2.56 9.95 22.67 0.23 -2.34 16 18 C -0.18 -4.09 5.98 -19.87 -0.12 -4.21 16 19 C 0.58 13.86 8.06 86.60 0.70 14.56 16 20 N -0.83 -10.23 8.84 -176.04 -1.56 -11.79 16 21 O -0.59 -20.41 17.63 -4.15 -0.07 -20.49 16 22 C -0.20 -2.93 10.38 67.30 0.70 -2.23 16 23 S 0.23 3.93 21.47 -56.49 -1.21 2.71 16 24 H 0.13 2.60 6.33 -2.39 -0.02 2.58 16 25 H 0.11 3.41 6.30 -2.39 -0.02 3.40 16 26 H 0.07 2.56 6.96 -2.39 -0.02 2.55 16 27 H 0.09 2.29 5.92 -2.39 -0.01 2.27 16 28 H 0.00 0.14 6.03 -2.39 -0.01 0.13 16 29 H 0.01 0.39 7.92 -2.39 -0.02 0.37 16 30 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 31 H 0.07 1.56 6.07 -2.39 -0.01 1.55 16 32 H 0.08 2.55 7.92 -2.39 -0.02 2.53 16 33 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.42 2.01 7.33 -92.71 -0.68 1.33 16 35 H 0.41 4.09 8.93 -92.71 -0.83 3.26 16 36 H 0.21 1.15 7.01 -2.91 -0.02 1.13 16 Total: -1.00 -70.38 324.26 0.33 -70.05 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.35 Total: 6.62 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.09 Total: -1.47 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -5.15 Total: -102.22 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.07 Total: -20.49 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.21 Total: 2.71 kcal Total: -70.38 0.33 -70.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152833661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.523 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds