Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46498 * 109.47434 * 269.95901 * 10 9 7 12 12 C 1.46503 * 119.99772 * 270.00048 * 11 10 9 13 13 C 1.34773 * 120.00342 * 89.99502 * 11 10 9 14 14 O 1.21691 * 119.99845 * 0.02562 * 13 11 10 15 15 C 1.46380 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.07999 * 119.99893 * 359.97438 * 15 13 11 17 17 C 1.40049 * 119.99815 * 179.97438 * 15 13 11 18 18 N 1.30666 * 119.99975 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99750 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47098 * 89.99859 * 19 17 15 21 21 H 1.48499 * 109.47238 * 209.99813 * 19 17 15 22 22 H 1.48502 * 109.47095 * 329.99825 * 19 17 15 23 23 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 27 27 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 29 29 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 30 30 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 31 31 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 32 32 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 33 33 H 1.09001 * 109.47537 * 89.99195 * 12 11 10 34 34 H 1.09003 * 109.46831 * 209.99407 * 12 11 10 35 35 H 1.08998 * 109.46984 * 329.99270 * 12 11 10 36 36 H 0.97008 * 119.99986 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5742 1.3949 12 6 3.7228 3.9195 2.0879 13 6 6.1487 3.6989 2.0299 14 8 7.1818 3.4124 1.4541 15 6 6.1900 4.1788 3.4121 16 1 5.2732 4.4334 3.9230 17 6 7.4185 4.3079 4.0721 18 7 8.5277 3.9993 3.4541 19 14 7.4714 4.9210 5.8358 20 1 7.3759 3.7662 6.7644 21 1 8.7484 5.6414 6.0714 22 1 6.3318 5.8430 6.0736 23 16 2.5176 -1.4383 -0.0077 24 1 -0.3633 -1.0277 -0.0051 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8363 2.0648 0.0004 28 1 7.6343 1.1232 1.0287 29 1 7.8339 0.2635 -0.5170 30 1 7.4330 1.9977 -0.5085 31 1 5.8416 3.3840 -0.5017 32 1 4.0677 3.5312 -0.4997 33 1 3.3344 3.0381 2.5983 34 1 3.9196 4.7048 2.8178 35 1 2.9890 4.2725 1.3633 36 1 9.3786 4.0883 3.9113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154030487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 60.890998 kcal Electronic energy + Delta-G solvation = -21477.387355 eV Core-core repulsion = 18282.939781 eV Total energy + Delta-G solvation = -3194.447574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31806 -37.75682 -36.79884 -34.08250 -32.53748 -32.39469 -31.11639 -28.62855 -27.16194 -26.00961 -25.33148 -24.19777 -22.98314 -20.14038 -19.38645 -19.13462 -17.79975 -16.54515 -15.96682 -15.81481 -15.38748 -14.73241 -14.46015 -14.12446 -13.93194 -13.72914 -13.69193 -12.78009 -12.46559 -12.44356 -12.30822 -12.10272 -11.70682 -11.58996 -11.48960 -11.25322 -11.16812 -11.07670 -10.92282 -10.78432 -10.31097 -10.19910 -10.04601 -9.70189 -8.88028 -8.25238 -7.70690 -7.44908 -7.21808 -6.22461 -4.67946 1.02998 1.06637 1.68278 2.43882 2.80865 3.11569 3.18700 3.20880 3.28252 4.07303 4.48225 4.56495 4.61037 4.82789 4.92030 5.08932 5.23664 5.35837 5.46901 5.55574 5.61676 5.74372 5.84606 5.95108 6.11517 6.34292 6.42113 6.43160 6.57570 6.63849 6.81877 7.20781 7.26874 7.41039 7.48873 8.05588 8.14918 8.26740 8.99006 9.33667 10.52760 10.71295 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.004778 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.600671 B = 5858.200018 C = 6385.746286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.205 4.205 3 C 0.059 3.941 4 N -0.402 5.402 5 C 0.127 3.873 6 N -0.458 5.458 7 C 0.069 3.931 8 C -0.055 4.055 9 C -0.023 4.023 10 C 0.202 3.798 11 N -0.642 5.642 12 C 0.104 3.896 13 C 0.557 3.443 14 O -0.564 6.564 15 C -0.542 4.542 16 H 0.069 0.931 17 C 0.089 3.911 18 N -0.763 5.763 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.266 1.266 23 S 0.162 5.838 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.174 0.826 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 -4.605 -6.303 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.324 4.324 3 C -0.070 4.070 4 N -0.081 5.081 5 C -0.239 4.239 6 N -0.182 5.182 7 C -0.061 4.061 8 C -0.113 4.113 9 C -0.136 4.136 10 C 0.076 3.924 11 N -0.381 5.381 12 C -0.041 4.041 13 C 0.363 3.637 14 O -0.446 6.446 15 C -0.579 4.579 16 H 0.087 0.913 17 C -0.131 4.131 18 N -0.391 5.391 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.190 1.190 23 S 0.410 5.590 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.191 0.809 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.261 -6.758 -6.614 17.111 hybrid contribution -0.398 2.350 1.107 2.628 sum -14.659 -4.409 -5.506 16.268 Atomic orbital electron populations 1.20211 0.85717 1.03444 1.03364 1.23649 1.01003 0.94887 1.12870 1.20155 0.80761 1.01280 1.04832 1.43668 1.04838 1.07889 1.51743 1.25906 0.97771 0.86589 1.13616 1.70476 1.01691 1.24932 1.21100 1.20787 0.96980 0.86564 1.01772 1.20150 0.86083 1.00651 1.04439 1.22164 0.81287 0.96774 1.13424 1.19386 1.02324 0.83755 0.86918 1.48170 1.07619 1.70493 1.11773 1.21393 0.86527 0.99517 0.96666 1.18248 0.80495 0.77904 0.87078 1.90578 1.31742 1.54387 1.67848 1.20970 0.93462 1.46886 0.96564 0.91265 1.25683 0.95194 0.93304 0.98890 1.69992 0.98135 1.34814 1.36198 0.86426 0.78305 0.79340 0.83033 1.19794 1.20397 1.18981 1.84383 0.87917 1.03250 1.83423 0.90785 0.90224 0.90126 0.80914 0.89273 0.92717 0.90134 0.87939 0.92329 0.95618 0.90556 0.94411 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.36 36.01 0.37 -0.09 16 2 C -0.20 -2.29 6.42 -36.00 -0.23 -2.52 16 3 C 0.06 0.78 11.11 -16.71 -0.19 0.60 16 4 N -0.40 -7.12 3.19 -59.60 -0.19 -7.31 16 5 C 0.13 2.38 8.93 -88.71 -0.79 1.58 16 6 N -0.46 -9.86 11.32 -9.77 -0.11 -9.97 16 7 C 0.07 1.50 7.06 -83.08 -0.59 0.92 16 8 C -0.06 -1.18 8.76 36.01 0.32 -0.87 16 9 C -0.02 -0.46 6.83 -80.75 -0.55 -1.01 16 10 C 0.20 3.90 5.77 -5.19 -0.03 3.87 16 11 N -0.64 -14.14 2.86 -184.63 -0.53 -14.67 16 12 C 0.10 1.87 10.19 59.85 0.61 2.48 16 13 C 0.56 15.06 7.61 -12.99 -0.10 14.96 16 14 O -0.56 -16.51 11.46 5.20 0.06 -16.45 16 15 C -0.54 -14.83 8.74 -35.63 -0.31 -15.14 16 16 H 0.07 1.75 6.00 -52.49 -0.31 1.44 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 18 N -0.76 -22.01 11.83 55.55 0.66 -21.35 16 19 Si 0.90 19.85 29.56 -169.99 -5.02 14.83 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 S 0.16 2.17 23.35 -107.50 -2.51 -0.34 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.09 2.20 7.29 -51.93 -0.38 1.82 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.71 6.49 -51.93 -0.34 1.37 16 31 H 0.10 2.09 6.41 -51.92 -0.33 1.76 16 32 H 0.06 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.42 6.09 -51.93 -0.32 1.11 16 35 H 0.04 0.54 7.89 -51.93 -0.41 0.13 16 36 H 0.27 7.09 8.29 -40.82 -0.34 6.76 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -34.13 317.28 -8.62 -42.75 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.17 Total: 0.62 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.58 Total: 7.12 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.17 Total: -53.31 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.06 Total: -16.45 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.51 Total: -0.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.13 -8.62 -42.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154030487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.641 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds