Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46498 * 109.47434 * 269.95901 * 10 9 7 12 12 C 1.46503 * 119.99772 * 270.00048 * 11 10 9 13 13 C 1.34773 * 120.00342 * 89.99502 * 11 10 9 14 14 O 1.21691 * 119.99845 * 0.02562 * 13 11 10 15 15 C 1.46380 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.07999 * 119.99893 * 359.97438 * 15 13 11 17 17 C 1.40049 * 119.99815 * 179.97438 * 15 13 11 18 18 N 1.30666 * 119.99975 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99750 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47098 * 89.99859 * 19 17 15 21 21 H 1.48499 * 109.47238 * 209.99813 * 19 17 15 22 22 H 1.48502 * 109.47095 * 329.99825 * 19 17 15 23 23 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 27 27 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 29 29 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 30 30 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 31 31 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 32 32 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 33 33 H 1.09001 * 109.47537 * 89.99195 * 12 11 10 34 34 H 1.09003 * 109.46831 * 209.99407 * 12 11 10 35 35 H 1.08998 * 109.46984 * 329.99270 * 12 11 10 36 36 H 0.97008 * 119.99986 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5742 1.3949 12 6 3.7228 3.9195 2.0879 13 6 6.1487 3.6989 2.0299 14 8 7.1818 3.4124 1.4541 15 6 6.1900 4.1788 3.4121 16 1 5.2732 4.4334 3.9230 17 6 7.4185 4.3079 4.0721 18 7 8.5277 3.9993 3.4541 19 14 7.4714 4.9210 5.8358 20 1 7.3759 3.7662 6.7644 21 1 8.7484 5.6414 6.0714 22 1 6.3318 5.8430 6.0736 23 16 2.5176 -1.4383 -0.0077 24 1 -0.3633 -1.0277 -0.0051 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8363 2.0648 0.0004 28 1 7.6343 1.1232 1.0287 29 1 7.8339 0.2635 -0.5170 30 1 7.4330 1.9977 -0.5085 31 1 5.8416 3.3840 -0.5017 32 1 4.0677 3.5312 -0.4997 33 1 3.3344 3.0381 2.5983 34 1 3.9196 4.7048 2.8178 35 1 2.9890 4.2725 1.3633 36 1 9.3786 4.0883 3.9113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154030487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 39.236950 kcal Electronic energy + Delta-G solvation = -21478.326345 eV Core-core repulsion = 18282.939781 eV Total energy + Delta-G solvation = -3195.386564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.68837 -39.59513 -38.01448 -35.93193 -34.53719 -33.54297 -32.67477 -30.04756 -28.70920 -27.69978 -26.67040 -25.81727 -24.23880 -21.76318 -20.83873 -20.52170 -19.08300 -18.39093 -17.69215 -17.32746 -16.86029 -16.17155 -16.11113 -15.83033 -15.12915 -14.81182 -14.60321 -14.30177 -13.99490 -13.87400 -13.66601 -13.36968 -13.27012 -13.20552 -13.10976 -12.99089 -12.85153 -12.66932 -12.16135 -12.12005 -12.07619 -12.01614 -11.26549 -11.19238 -10.89880 -9.74942 -9.53417 -9.16873 -8.62522 -8.23384 -6.79129 -0.17848 -0.08755 0.62532 1.19621 1.39059 1.39530 1.53731 1.55704 1.71728 2.24815 2.51419 2.96317 3.32720 3.65523 3.72045 3.92903 4.02892 4.05152 4.25710 4.47012 4.51028 4.59982 4.76302 4.82160 4.82309 4.87464 4.94433 4.96109 5.04505 5.16927 5.29594 5.38752 5.59113 5.74171 5.91811 6.14113 6.36250 6.68114 6.92228 7.41902 8.52285 8.71424 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.004778 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.600671 B = 5858.200018 C = 6385.746286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.171 4.171 3 C 0.021 3.979 4 N -0.398 5.398 5 C 0.105 3.895 6 N -0.501 5.501 7 C 0.034 3.966 8 C -0.037 4.037 9 C -0.029 4.029 10 C 0.207 3.793 11 N -0.645 5.645 12 C 0.103 3.897 13 C 0.540 3.460 14 O -0.599 6.599 15 C -0.570 4.570 16 H 0.085 0.915 17 C 0.034 3.966 18 N -0.814 5.814 19 Si 0.986 3.014 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.248 1.248 23 S 0.196 5.804 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.207 0.793 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 -4.237 -5.823 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.290 4.290 3 C -0.106 4.106 4 N -0.077 5.077 5 C -0.261 4.261 6 N -0.227 5.227 7 C -0.096 4.096 8 C -0.094 4.094 9 C -0.145 4.145 10 C 0.082 3.918 11 N -0.381 5.381 12 C -0.040 4.040 13 C 0.345 3.655 14 O -0.484 6.484 15 C -0.607 4.607 16 H 0.103 0.897 17 C -0.182 4.182 18 N -0.443 5.443 19 Si 0.806 3.194 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.171 1.171 23 S 0.444 5.556 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.223 0.777 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.683 -6.388 -6.152 20.680 hybrid contribution 0.714 2.094 0.868 2.377 sum -17.968 -4.294 -5.283 19.215 Atomic orbital electron populations 1.20500 0.81817 1.05094 1.05421 1.24369 1.02887 0.92927 1.08788 1.20774 0.78721 1.03630 1.07449 1.43786 1.06009 1.07069 1.50818 1.26793 0.98256 0.88498 1.12565 1.70353 1.03723 1.25076 1.23511 1.20810 0.97157 0.87735 1.03896 1.19822 0.87316 1.00741 1.01564 1.22000 0.82074 0.96743 1.13652 1.19432 1.03141 0.83689 0.85549 1.47998 1.07609 1.69754 1.12789 1.21535 0.85629 0.99244 0.97594 1.18557 0.81592 0.77750 0.87589 1.90551 1.33665 1.55521 1.68648 1.21476 0.94495 1.47356 0.97330 0.89694 1.26809 0.94489 0.92935 1.03925 1.70157 0.99012 1.36492 1.38668 0.85190 0.78959 0.78901 0.76344 1.19457 1.19787 1.17129 1.84343 0.85400 1.03625 1.82191 0.89361 0.87723 0.88190 0.77667 0.93620 0.91376 0.90912 0.90113 0.88019 0.95742 0.91380 0.89730 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.36 71.24 0.74 0.21 16 2 C -0.17 -3.09 6.42 25.74 0.17 -2.92 16 3 C 0.02 0.47 11.11 83.86 0.93 1.41 16 4 N -0.40 -13.60 3.19 -342.49 -1.09 -14.70 16 5 C 0.10 3.88 8.93 179.68 1.60 5.48 16 6 N -0.50 -22.41 11.32 -184.83 -2.09 -24.51 16 7 C 0.03 1.57 7.06 41.36 0.29 1.87 16 8 C -0.04 -1.70 8.76 71.24 0.62 -1.08 16 9 C -0.03 -1.18 6.83 40.54 0.28 -0.91 16 10 C 0.21 7.96 5.77 85.63 0.49 8.45 16 11 N -0.64 -28.34 2.86 -856.25 -2.45 -30.79 16 12 C 0.10 3.51 10.19 127.77 1.30 4.81 16 13 C 0.54 30.21 7.61 86.36 0.66 30.87 16 14 O -0.60 -37.23 11.46 -4.32 -0.05 -37.27 16 15 C -0.57 -31.73 8.74 24.83 0.22 -31.51 16 16 H 0.09 4.28 6.00 -2.91 -0.02 4.27 16 17 C 0.03 1.88 5.50 85.31 0.47 2.35 16 18 N -0.81 -49.00 11.83 21.84 0.26 -48.74 16 19 Si 0.99 41.09 29.56 68.60 2.03 43.12 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 23 S 0.20 4.79 23.35 -56.49 -1.32 3.47 16 24 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.21 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.04 2.48 7.29 -2.39 -0.02 2.46 16 29 H 0.07 2.82 8.14 -2.38 -0.02 2.81 16 30 H 0.07 3.39 6.49 -2.38 -0.02 3.37 16 31 H 0.08 3.44 6.41 -2.38 -0.02 3.42 16 32 H 0.10 2.96 7.89 -2.39 -0.02 2.94 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 2.42 6.09 -2.39 -0.01 2.41 16 35 H 0.08 2.07 7.89 -2.39 -0.02 2.05 16 36 H 0.27 15.00 8.29 -92.70 -0.77 14.23 16 Total: -1.00 -80.59 317.28 4.17 -76.42 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.11 Total: 13.98 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 7.77 Total: 19.03 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -5.37 Total: -118.73 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.05 Total: -37.27 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.32 Total: 3.47 kcal Total: -80.59 4.17 -76.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154030487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.656 kcal (2) G-P(sol) polarization free energy of solvation -80.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds