Wall clock time and date at job start Tue Mar 31 2020 07:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 H 1.08995 * 109.47738 * 177.93077 * 3 2 1 5 5 C 1.50703 * 109.46871 * 57.92692 * 3 2 1 6 6 H 1.08005 * 120.00173 * 239.99855 * 5 3 2 7 7 C 1.37877 * 119.99800 * 60.00263 * 5 3 2 8 8 N 1.31512 * 120.00077 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99968 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46726 * 60.00452 * 9 7 5 11 11 H 1.48504 * 109.47171 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47531 * 300.00209 * 9 7 5 13 13 N 1.46906 * 109.47099 * 297.93265 * 3 2 1 14 14 C 1.46902 * 110.99838 * 273.73306 * 13 3 2 15 15 C 1.50695 * 109.46898 * 175.02017 * 14 13 3 16 16 C 1.34182 * 126.91529 * 270.03876 * 15 14 13 17 17 Cl 1.73601 * 124.93817 * 0.02562 * 16 15 14 18 18 O 1.34448 * 110.12171 * 179.97438 * 16 15 14 19 19 C 1.34846 * 110.89403 * 0.02562 * 18 16 15 20 20 C 1.38914 * 133.46689 * 179.97438 * 19 18 16 21 21 C 1.37871 * 119.82112 * 179.97438 * 20 19 18 22 22 C 1.38734 * 120.68442 * 0.02755 * 21 20 19 23 23 C 1.36746 * 120.41467 * 359.97438 * 22 21 20 24 24 C 1.39409 * 119.71608 * 359.95379 * 23 22 21 25 25 H 1.08999 * 109.46891 * 294.39523 * 1 2 3 26 26 H 1.09007 * 109.47188 * 54.39010 * 1 2 3 27 27 H 1.08998 * 109.47216 * 174.39612 * 1 2 3 28 28 H 1.09001 * 109.47070 * 240.00285 * 2 1 3 29 29 H 1.08998 * 109.47395 * 120.00524 * 2 1 3 30 30 H 0.97001 * 120.00419 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99898 * 149.78311 * 13 3 2 32 32 H 1.09004 * 109.46806 * 55.02325 * 14 13 3 33 33 H 1.08997 * 109.47211 * 295.02243 * 14 13 3 34 34 H 1.08005 * 120.08897 * 359.97438 * 20 19 18 35 35 H 1.07996 * 119.65714 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.79069 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.14103 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4428 0.0371 5 6 1.4962 2.1675 1.2040 6 1 0.8792 3.0443 1.0733 7 6 1.7863 1.7116 2.4725 8 7 2.5381 0.6444 2.6317 9 14 1.1128 2.6108 3.9649 10 1 -0.3714 2.6109 3.9145 11 1 1.5655 1.9250 5.2019 12 1 1.6082 4.0106 3.9648 13 7 1.5916 2.1204 -1.2237 14 6 2.5297 1.8856 -2.3295 15 6 1.9772 2.4912 -3.5940 16 6 1.1842 1.8916 -4.4952 17 17 0.6170 0.2544 -4.3871 18 8 0.8920 2.7434 -5.4935 19 6 1.4805 3.9399 -5.2925 20 6 1.4954 5.1300 -6.0090 21 6 2.2094 6.2086 -5.5319 22 6 2.9159 6.1192 -4.3413 23 6 2.9143 4.9569 -3.6209 24 6 2.1968 3.8561 -4.0868 25 1 -0.3633 0.4245 0.9359 26 1 -0.3634 0.5984 -0.8355 27 1 -0.3633 -1.0227 -0.1003 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.7425 0.3238 3.5241 31 1 1.4620 3.1081 -1.0631 32 1 2.6652 0.8131 -2.4694 33 1 3.4897 2.3457 -2.0956 34 1 0.9491 5.2100 -6.9372 35 1 2.2195 7.1323 -6.0912 36 1 3.4707 6.9729 -3.9811 37 1 3.4662 4.8920 -2.6948 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164475088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:33 Heat of formation + Delta-G solvation = 8.702936 kcal Electronic energy + Delta-G solvation = -20927.557824 eV Core-core repulsion = 17696.510748 eV Total energy + Delta-G solvation = -3231.047076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.56036 -38.90528 -38.32947 -37.91123 -35.36619 -33.61230 -32.16606 -31.41288 -30.27841 -28.42757 -25.99607 -24.93492 -24.28704 -23.31361 -21.35752 -20.81492 -18.69543 -18.62707 -17.82191 -17.50288 -16.92438 -16.81847 -15.94952 -15.37274 -15.25933 -15.17223 -14.82605 -14.55054 -14.18055 -13.84823 -13.57149 -13.42428 -13.20376 -13.01313 -12.83710 -12.73555 -12.57087 -12.39175 -12.34683 -12.01412 -11.77391 -11.62949 -11.31102 -10.94953 -10.75896 -10.51153 -9.65227 -9.16230 -8.99578 -8.07265 -6.18909 -0.18834 0.06155 0.33888 1.10591 1.43838 1.45456 1.52238 2.22580 2.44520 2.72813 3.21869 3.46629 3.56780 3.79480 3.93122 4.12657 4.30186 4.40384 4.49656 4.55624 4.62044 4.72148 4.83223 4.87128 4.97388 5.07603 5.25926 5.32598 5.39019 5.41134 5.50385 5.57062 5.59150 5.73602 5.82879 5.90978 6.03631 6.29371 6.48673 6.77448 7.02615 7.49418 8.97610 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.004807 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.052140 B = 5823.959903 C = 7097.292233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C 0.225 3.775 4 H -0.031 1.031 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.671 5.671 14 C 0.134 3.866 15 C -0.133 4.133 16 C 0.064 3.936 17 Cl 0.040 6.960 18 O -0.199 6.199 19 C 0.039 3.961 20 C -0.110 4.110 21 C -0.079 4.079 22 C -0.127 4.127 23 C -0.081 4.081 24 C -0.141 4.141 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 8.738 -17.091 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C 0.117 3.883 4 H -0.013 1.013 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.301 5.301 14 C 0.004 3.996 15 C -0.136 4.136 16 C -0.010 4.010 17 Cl 0.069 6.931 18 O -0.102 6.102 19 C -0.008 4.008 20 C -0.128 4.128 21 C -0.096 4.096 22 C -0.145 4.145 23 C -0.099 4.099 24 C -0.142 4.142 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.178 0.822 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.792 7.886 -17.337 19.063 hybrid contribution 0.468 0.142 1.457 1.537 sum -0.324 8.028 -15.880 17.797 Atomic orbital electron populations 1.21285 0.96253 0.98261 1.00519 1.21284 0.96075 0.97633 0.98402 1.18911 0.91273 0.92210 0.85927 1.01316 1.21374 1.31503 1.11983 0.91256 0.92636 1.25560 0.95328 0.95661 1.01326 1.70006 1.38304 1.24251 1.22859 0.85711 0.78793 0.78799 0.78909 1.19962 1.21214 1.19722 1.60621 1.47319 1.16079 1.06108 1.20138 0.93047 0.99385 0.86985 1.20848 1.02005 0.93163 0.97570 1.22047 1.01041 0.87601 0.90352 1.98439 1.88364 1.09529 1.96746 1.83813 1.62846 1.20304 1.43266 1.20015 0.97383 0.86180 0.97204 1.20395 1.03214 0.87889 1.01342 1.21457 0.94123 0.98336 0.95701 1.21212 1.00313 0.97643 0.95316 1.20550 0.97517 0.91614 1.00260 1.19866 1.03230 0.94447 0.96658 0.95105 0.92935 0.94932 0.96043 0.92412 0.93041 0.85147 0.90807 0.94867 0.82491 0.80535 0.82215 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.46 71.98 0.68 -4.08 16 2 C -0.10 -4.63 5.58 30.59 0.17 -4.46 16 3 C 0.22 11.16 2.30 44.17 0.10 11.26 16 4 H -0.03 -1.69 7.84 -2.39 -0.02 -1.71 16 5 C -0.52 -27.86 7.33 25.60 0.19 -27.68 16 6 H 0.06 2.93 7.60 -2.91 -0.02 2.91 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -51.87 11.34 21.45 0.24 -51.63 16 9 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.67 -28.27 5.50 -499.45 -2.75 -31.01 16 14 C 0.13 4.95 5.79 85.56 0.50 5.45 16 15 C -0.13 -4.47 5.91 -18.56 -0.11 -4.58 16 16 C 0.06 2.08 7.84 66.89 0.52 2.60 16 17 Cl 0.04 1.21 28.80 -2.72 -0.08 1.13 16 18 O -0.20 -6.16 10.58 -9.30 -0.10 -6.26 16 19 C 0.04 1.08 7.42 22.98 0.17 1.25 16 20 C -0.11 -2.14 10.07 22.34 0.23 -1.92 16 21 C -0.08 -1.18 10.01 22.30 0.22 -0.95 16 22 C -0.13 -2.25 9.98 22.04 0.22 -2.03 16 23 C -0.08 -2.03 10.05 22.20 0.22 -1.81 16 24 C -0.14 -4.23 6.38 -20.22 -0.13 -4.36 16 25 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 26 H 0.05 2.29 7.50 -2.38 -0.02 2.27 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.02 0.96 7.43 -2.39 -0.02 0.94 16 29 H 0.06 3.14 6.13 -2.39 -0.01 3.12 16 30 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.33 13.99 8.24 -89.69 -0.74 13.25 16 32 H 0.07 2.79 7.12 -2.38 -0.02 2.77 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -61.27 326.56 3.13 -58.14 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.35 Total: 14.25 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 3.43 Total: -29.73 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.50 Total: -82.64 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.10 Total: -6.26 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.13 kcal Total: -61.27 3.13 -58.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164475088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.845 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds