Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47033 * 71.94035 * 3 2 1 5 5 N 1.46501 * 109.47029 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99706 * 269.99972 * 5 4 3 7 7 C 1.50698 * 109.47380 * 269.99935 * 6 5 4 8 8 H 1.08003 * 120.00001 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00377 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00350 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47007 * 90.00086 * 11 9 7 13 13 H 1.48498 * 109.47129 * 209.99738 * 11 9 7 14 14 H 1.48501 * 109.47293 * 330.00328 * 11 9 7 15 15 C 1.34777 * 119.99878 * 90.00060 * 5 4 3 16 16 O 1.21280 * 119.99588 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00162 * 359.97438 * 15 5 4 18 18 C 1.52995 * 109.47027 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.47238 * 180.02562 * 18 17 15 20 20 C 1.33635 * 122.75319 * 124.73253 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 1.09000 * 109.47021 * 311.93940 * 3 2 1 25 25 H 1.09000 * 109.47144 * 191.93774 * 3 2 1 26 26 H 1.09000 * 109.46768 * 60.00067 * 4 3 2 27 27 H 1.09000 * 109.46942 * 299.99862 * 4 3 2 28 28 H 1.08998 * 109.47434 * 30.00090 * 6 5 4 29 29 H 1.09002 * 109.47360 * 150.00165 * 6 5 4 30 30 H 0.97001 * 120.00426 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47046 * 60.00284 * 17 15 5 32 32 H 1.08998 * 109.47040 * 300.00114 * 17 15 5 33 33 H 1.08997 * 109.47344 * 59.99930 * 18 17 15 34 34 H 1.08998 * 109.47310 * 299.99956 * 18 17 15 35 35 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 36 36 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4463 -1.3715 5 7 4.5832 -0.4462 -1.3713 6 6 5.3156 0.7601 -1.7643 7 6 5.5670 0.7335 -3.2500 8 1 5.2159 -0.0986 -3.8423 9 6 6.2452 1.7714 -3.8531 10 7 6.4642 1.7484 -5.1497 11 14 6.8519 3.2109 -2.8289 12 1 8.2250 2.9266 -2.3399 13 1 6.8679 4.4397 -3.6626 14 1 5.9452 3.4107 -1.6699 15 6 5.2571 -1.5560 -1.0095 16 8 6.4699 -1.5560 -1.0098 17 6 4.5036 -2.7967 -0.6047 18 6 5.4979 -3.9025 -0.2450 19 6 4.7444 -5.1435 0.1593 20 6 4.9372 -6.3292 -0.4261 21 16 3.8638 -7.4951 0.3440 22 6 3.2565 -6.2704 1.3710 23 7 3.8367 -5.1468 1.1148 24 1 2.9716 -0.6860 0.7644 25 1 2.9709 1.0063 0.2126 26 1 2.7545 0.2404 -2.1358 27 1 2.7553 -1.4519 -1.5841 28 1 4.7265 1.6415 -1.5113 29 1 6.2680 0.7955 -1.2353 30 1 6.9416 2.4784 -5.5741 31 1 3.8768 -3.1275 -1.4328 32 1 3.8772 -2.5756 0.2594 33 1 6.1251 -3.5720 0.5829 34 1 6.1239 -4.1235 -1.1094 35 1 5.6295 -6.5364 -1.2287 36 1 2.4972 -6.4163 2.1251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171201274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = 33.942954 kcal Electronic energy + Delta-G solvation = -20368.805476 eV Core-core repulsion = 17173.189346 eV Total energy + Delta-G solvation = -3195.616129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14578 -39.24188 -36.89076 -35.35339 -33.52030 -32.69130 -30.99281 -30.06379 -28.01538 -25.68236 -24.33731 -23.89101 -21.90568 -19.69833 -18.48622 -18.06496 -17.69203 -16.84346 -16.58001 -15.88281 -15.69002 -15.11642 -14.70308 -14.51702 -14.10973 -13.79231 -13.64322 -13.41313 -13.05434 -12.77218 -12.62473 -12.44905 -12.30783 -11.93383 -11.76012 -11.53139 -11.52499 -11.08334 -11.02900 -10.74030 -10.55296 -10.20942 -9.85313 -9.66073 -9.59173 -9.17245 -8.92437 -8.62058 -7.89222 -6.11689 -4.11167 0.53872 1.20344 1.53548 2.62226 2.71699 2.80577 3.25914 3.26996 3.32488 3.34848 3.59153 4.02963 4.18360 4.36567 4.80714 4.94679 5.00371 5.09305 5.12741 5.15612 5.22316 5.27161 5.41583 5.52131 5.67341 5.81138 5.90829 6.06506 6.08868 6.23560 6.61252 6.88371 7.21557 7.53962 7.55796 7.57219 8.10588 8.42346 8.84833 8.92822 9.48073 11.01594 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.003966 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.274115 B = 7058.182719 C = 8342.102346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.214 3.786 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.265 1.265 15 C 0.511 3.489 16 O -0.534 6.534 17 C -0.134 4.134 18 C -0.029 4.029 19 C 0.071 3.929 20 C -0.251 4.251 21 S 0.102 5.898 22 C 0.022 3.978 23 N -0.464 5.464 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.179 0.821 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -15.000 12.775 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.094 3.906 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.298 3.702 16 O -0.411 6.411 17 C -0.174 4.174 18 C -0.070 4.070 19 C -0.060 4.060 20 C -0.390 4.390 21 S 0.354 5.646 22 C -0.277 4.277 23 N -0.177 5.177 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.197 0.803 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.507 -15.475 12.823 21.453 hybrid contribution 1.092 1.493 0.093 1.852 sum -6.415 -13.982 12.915 20.086 Atomic orbital electron populations 1.81205 1.13033 1.09261 1.08663 1.29061 0.95070 0.92860 0.93095 1.19901 0.81479 1.06133 1.01754 1.21320 0.81757 1.03125 0.94616 1.47876 1.04949 1.14044 1.65532 1.19717 0.92546 0.81559 0.96821 1.21316 1.37132 1.07570 0.90918 0.90685 1.24858 0.95228 0.98062 0.94818 1.69893 1.41314 1.32826 1.09451 0.86868 0.80159 0.82248 0.80504 1.19900 1.21143 1.18963 1.20392 0.88075 0.84310 0.77447 1.90685 1.13882 1.83313 1.53225 1.21647 0.99141 0.93561 1.03097 1.19960 0.95789 0.88423 1.02802 1.20499 0.96112 0.96204 0.93222 1.26925 1.07941 0.95545 1.08564 1.84027 1.33796 1.16120 1.30655 1.28405 1.04279 0.90881 1.04093 1.66135 1.08717 1.26491 1.16405 0.87307 0.86743 0.88639 0.90265 0.95049 0.94249 0.92530 0.89326 0.88604 0.89213 0.89206 0.80349 0.78523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.58 18.54 42.15 0.78 -5.80 16 2 C 0.22 2.63 15.43 -20.76 -0.32 2.31 16 3 C -0.05 -0.53 6.03 -29.51 -0.18 -0.70 16 4 C 0.12 1.56 5.17 -4.04 -0.02 1.54 16 5 N -0.59 -10.52 2.46 -175.06 -0.43 -10.95 16 6 C 0.21 4.72 4.23 -5.20 -0.02 4.70 16 7 C -0.53 -14.38 9.94 -34.44 -0.34 -14.72 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 11 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 15 C 0.51 9.07 7.67 -10.99 -0.08 8.99 16 16 O -0.53 -11.79 15.56 5.56 0.09 -11.70 16 17 C -0.13 -1.74 4.15 -27.89 -0.12 -1.86 16 18 C -0.03 -0.37 5.00 -27.88 -0.14 -0.51 16 19 C 0.07 0.81 6.08 -84.22 -0.51 0.30 16 20 C -0.25 -2.44 11.07 29.12 0.32 -2.12 16 21 S 0.10 0.80 23.22 -107.50 -2.50 -1.70 16 22 C 0.02 0.19 12.23 51.58 0.63 0.82 16 23 N -0.46 -5.29 10.34 -11.89 -0.12 -5.41 16 24 H 0.11 0.93 7.22 -51.93 -0.37 0.56 16 25 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.10 1.35 8.07 -51.93 -0.42 0.94 16 27 H 0.08 0.91 6.44 -51.93 -0.33 0.57 16 28 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 29 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.08 7.40 -51.93 -0.38 0.69 16 32 H 0.10 1.09 7.12 -51.93 -0.37 0.72 16 33 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.09 1.16 7.98 -51.93 -0.41 0.75 16 35 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -34.46 331.70 -6.26 -40.72 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.30 Total: -0.72 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.88 Total: 0.69 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 1.00 Total: -48.27 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.50 Total: -1.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.46 -6.26 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171201274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.665 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds