Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47033 * 71.94035 * 3 2 1 5 5 N 1.46501 * 109.47029 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99706 * 269.99972 * 5 4 3 7 7 C 1.50698 * 109.47380 * 269.99935 * 6 5 4 8 8 H 1.08003 * 120.00001 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00377 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00350 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47007 * 90.00086 * 11 9 7 13 13 H 1.48498 * 109.47129 * 209.99738 * 11 9 7 14 14 H 1.48501 * 109.47293 * 330.00328 * 11 9 7 15 15 C 1.34777 * 119.99878 * 90.00060 * 5 4 3 16 16 O 1.21280 * 119.99588 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00162 * 359.97438 * 15 5 4 18 18 C 1.52995 * 109.47027 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.47238 * 180.02562 * 18 17 15 20 20 C 1.33635 * 122.75319 * 124.73253 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 1.09000 * 109.47021 * 311.93940 * 3 2 1 25 25 H 1.09000 * 109.47144 * 191.93774 * 3 2 1 26 26 H 1.09000 * 109.46768 * 60.00067 * 4 3 2 27 27 H 1.09000 * 109.46942 * 299.99862 * 4 3 2 28 28 H 1.08998 * 109.47434 * 30.00090 * 6 5 4 29 29 H 1.09002 * 109.47360 * 150.00165 * 6 5 4 30 30 H 0.97001 * 120.00426 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47046 * 60.00284 * 17 15 5 32 32 H 1.08998 * 109.47040 * 300.00114 * 17 15 5 33 33 H 1.08997 * 109.47344 * 59.99930 * 18 17 15 34 34 H 1.08998 * 109.47310 * 299.99956 * 18 17 15 35 35 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 36 36 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4463 -1.3715 5 7 4.5832 -0.4462 -1.3713 6 6 5.3156 0.7601 -1.7643 7 6 5.5670 0.7335 -3.2500 8 1 5.2159 -0.0986 -3.8423 9 6 6.2452 1.7714 -3.8531 10 7 6.4642 1.7484 -5.1497 11 14 6.8519 3.2109 -2.8289 12 1 8.2250 2.9266 -2.3399 13 1 6.8679 4.4397 -3.6626 14 1 5.9452 3.4107 -1.6699 15 6 5.2571 -1.5560 -1.0095 16 8 6.4699 -1.5560 -1.0098 17 6 4.5036 -2.7967 -0.6047 18 6 5.4979 -3.9025 -0.2450 19 6 4.7444 -5.1435 0.1593 20 6 4.9372 -6.3292 -0.4261 21 16 3.8638 -7.4951 0.3440 22 6 3.2565 -6.2704 1.3710 23 7 3.8367 -5.1468 1.1148 24 1 2.9716 -0.6860 0.7644 25 1 2.9709 1.0063 0.2126 26 1 2.7545 0.2404 -2.1358 27 1 2.7553 -1.4519 -1.5841 28 1 4.7265 1.6415 -1.5113 29 1 6.2680 0.7955 -1.2353 30 1 6.9416 2.4784 -5.5741 31 1 3.8768 -3.1275 -1.4328 32 1 3.8772 -2.5756 0.2594 33 1 6.1251 -3.5720 0.5829 34 1 6.1239 -4.1235 -1.1094 35 1 5.6295 -6.5364 -1.2287 36 1 2.4972 -6.4163 2.1251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171201274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = 10.787725 kcal Electronic energy + Delta-G solvation = -20369.809562 eV Core-core repulsion = 17173.189346 eV Total energy + Delta-G solvation = -3196.620215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10233 -40.44237 -37.99910 -36.73071 -34.91657 -34.30445 -32.31651 -31.01963 -29.60880 -26.64626 -25.33255 -25.19102 -23.48225 -20.45562 -19.84343 -19.15361 -18.83464 -18.44489 -17.78962 -17.12441 -16.70010 -16.39527 -15.84427 -15.68721 -15.50348 -14.89823 -14.67448 -14.53227 -14.12639 -14.06945 -13.89731 -13.71144 -13.53503 -13.39055 -12.98468 -12.87806 -12.62864 -12.42429 -12.37288 -11.99692 -11.95153 -11.75546 -11.67297 -10.75901 -10.61024 -10.55637 -10.35370 -9.68510 -9.43716 -8.26751 -6.31303 -0.14301 0.55307 0.85418 1.39891 1.43821 1.51279 1.68929 1.82508 1.85562 1.91005 2.32603 2.37863 3.07732 3.15061 3.35385 3.77881 4.01635 4.06717 4.11655 4.21903 4.32234 4.48307 4.55336 4.66223 4.68935 4.82401 4.89732 5.03934 5.04894 5.10824 5.13795 5.30808 5.54223 5.66049 6.30624 6.61416 6.70293 6.72630 6.82775 7.28971 7.47086 8.90169 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.003966 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.274115 B = 7058.182719 C = 8342.102346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.038 4.038 4 C 0.113 3.887 5 N -0.596 5.596 6 C 0.221 3.779 7 C -0.533 4.533 8 H 0.029 0.971 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.228 1.228 15 C 0.505 3.495 16 O -0.585 6.585 17 C -0.118 4.118 18 C -0.025 4.025 19 C 0.054 3.946 20 C -0.265 4.265 21 S 0.151 5.849 22 C 0.020 3.980 23 N -0.493 5.493 24 H 0.136 0.864 25 H 0.130 0.870 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 -15.506 15.259 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.011 4.011 5 N -0.326 5.326 6 C 0.099 3.901 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.767 3.233 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.150 1.150 15 C 0.295 3.705 16 O -0.465 6.465 17 C -0.158 4.158 18 C -0.066 4.066 19 C -0.077 4.077 20 C -0.405 4.405 21 S 0.403 5.597 22 C -0.278 4.278 23 N -0.207 5.207 24 H 0.154 0.846 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.205 0.795 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.901 -16.008 15.332 23.887 hybrid contribution 1.487 1.470 -0.745 2.220 sum -7.414 -14.538 14.587 21.889 Atomic orbital electron populations 1.81248 1.14500 1.10979 1.10127 1.29186 0.95023 0.91350 0.91665 1.19855 0.80010 1.07675 1.00309 1.21502 0.78950 1.04353 0.96321 1.47857 1.06720 1.12930 1.65058 1.19415 0.93168 0.84470 0.93065 1.21634 1.36269 1.05854 0.93452 0.95240 1.25854 0.95519 1.01563 0.95949 1.70063 1.43007 1.34215 1.11747 0.85769 0.79779 0.77959 0.79788 1.20345 1.20949 1.15016 1.21231 0.87735 0.85284 0.76264 1.90659 1.16316 1.84177 1.55391 1.21587 0.98848 0.91062 1.04272 1.19803 0.95682 0.89235 1.01879 1.20281 0.97037 0.96023 0.94367 1.27162 1.08472 0.96035 1.08792 1.83884 1.32097 1.14453 1.29216 1.28962 1.04064 0.90453 1.04295 1.66116 1.09554 1.28054 1.17002 0.84646 0.85242 0.89754 0.88303 0.92285 0.95607 0.92536 0.88117 0.86133 0.90443 0.90448 0.79521 0.75514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.61 18.54 20.01 0.37 -13.24 16 2 C 0.25 5.27 15.43 89.44 1.38 6.65 16 3 C -0.04 -0.64 6.03 28.79 0.17 -0.46 16 4 C 0.11 2.75 5.17 86.38 0.45 3.20 16 5 N -0.60 -20.48 2.46 -826.16 -2.03 -22.51 16 6 C 0.22 9.55 4.23 85.63 0.36 9.92 16 7 C -0.53 -29.55 9.94 25.60 0.25 -29.30 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.01 0.49 5.47 84.65 0.46 0.95 16 10 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 11 Si 0.94 42.32 27.47 68.60 1.88 44.20 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.23 -8.75 6.54 99.48 0.65 -8.10 16 15 C 0.51 17.74 7.67 87.66 0.67 18.42 16 16 O -0.59 -26.38 15.56 -3.03 -0.05 -26.43 16 17 C -0.12 -2.90 4.15 29.85 0.12 -2.77 16 18 C -0.03 -0.64 5.00 29.85 0.15 -0.49 16 19 C 0.05 1.18 6.08 41.52 0.25 1.43 16 20 C -0.27 -4.80 11.07 66.77 0.74 -4.06 16 21 S 0.15 1.96 23.22 -56.49 -1.31 0.65 16 22 C 0.02 0.29 12.23 130.65 1.60 1.88 16 23 N -0.49 -10.16 10.34 -191.54 -1.98 -12.15 16 24 H 0.14 1.70 7.22 -2.39 -0.02 1.69 16 25 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 27 H 0.10 2.02 6.44 -2.39 -0.02 2.00 16 28 H 0.06 2.25 7.13 -2.39 -0.02 2.23 16 29 H 0.03 1.20 6.85 -2.39 -0.02 1.19 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.10 2.27 7.40 -2.39 -0.02 2.25 16 32 H 0.12 2.39 7.12 -2.39 -0.02 2.37 16 33 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 34 H 0.08 2.07 7.98 -2.39 -0.02 2.06 16 35 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.23 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -78.50 331.70 4.85 -73.66 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.05 Total: 9.05 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.61 Total: 5.36 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.34 Total: -106.49 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.31 Total: 0.65 kcal Total: -78.50 4.85 -73.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171201274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.444 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds