Wall clock time and date at job start Tue Mar 31 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99864 * 2 1 4 4 H 1.48498 * 109.46921 * 270.00131 * 3 2 1 5 5 H 1.48491 * 109.47031 * 30.00069 * 3 2 1 6 6 H 1.48499 * 109.46842 * 149.99934 * 3 2 1 7 7 C 1.37874 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46898 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.47038 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99902 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99533 * 180.02562 * 13 12 11 16 16 C 1.50705 * 109.46664 * 180.02562 * 15 13 12 17 17 C 1.34331 * 125.80755 * 124.99939 * 16 15 13 18 18 N 1.38926 * 107.12220 * 179.73806 * 17 16 15 19 19 C 1.37486 * 139.53714 * 180.21625 * 18 17 16 20 20 C 1.30909 * 116.32362 * 180.02562 * 19 18 17 21 21 S 1.75773 * 109.81852 * 359.97438 * 20 19 18 22 22 C 1.35147 * 106.52943 * 0.24591 * 18 17 16 23 23 N 1.32356 * 108.82339 * 359.97438 * 22 18 17 24 24 H 0.97003 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47314 * 59.99909 * 9 7 2 26 26 H 1.08999 * 109.46835 * 299.99938 * 9 7 2 27 27 H 1.09004 * 109.47152 * 59.99823 * 10 9 7 28 28 H 1.08999 * 109.47287 * 299.99674 * 10 9 7 29 29 H 1.08995 * 109.47113 * 60.00442 * 11 10 9 30 30 H 1.09000 * 109.47807 * 299.99602 * 11 10 9 31 31 H 0.96997 * 119.99425 * 0.02562 * 12 11 10 32 32 H 1.08991 * 109.47398 * 60.00743 * 15 13 12 33 33 H 1.08999 * 109.47454 * 300.00087 * 15 13 12 34 34 H 1.08002 * 126.44106 * 0.02562 * 17 16 15 35 35 H 1.08003 * 121.83610 * 0.04928 * 19 18 17 36 36 H 1.08004 * 125.08820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 7 2.4323 -6.1006 -0.0049 13 6 1.9830 -7.3713 -0.0051 14 8 0.7907 -7.5929 -0.0044 15 6 2.9624 -8.5166 -0.0062 16 6 2.2089 -9.8218 -0.0068 17 6 2.3568 -10.8142 -0.8999 18 7 1.4821 -11.8290 -0.5323 19 6 1.1017 -13.0835 -0.9470 20 6 0.1830 -13.6785 -0.2290 21 16 -0.2985 -12.6382 1.1035 22 6 0.8355 -11.3976 0.5733 23 7 1.2764 -10.1882 0.8812 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8720 -3.6050 0.8873 28 1 2.8719 -3.6035 -0.8927 29 1 0.8534 -5.0442 -0.8931 30 1 0.8539 -5.0454 0.8869 31 1 3.3859 -5.9233 -0.0051 32 1 3.5895 -8.4593 0.8834 33 1 3.5885 -8.4586 -0.8965 34 1 3.0324 -10.8236 -1.7425 35 1 1.5373 -13.5523 -1.8170 36 1 -0.2189 -14.6614 -0.4259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:55 Heat of formation + Delta-G solvation = 50.021364 kcal Electronic energy + Delta-G solvation = -19493.102897 eV Core-core repulsion = 16298.183980 eV Total energy + Delta-G solvation = -3194.918917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.85235 -39.31622 -36.90438 -35.26298 -33.25386 -32.03484 -31.02197 -30.86184 -27.90222 -26.26285 -24.32552 -23.13119 -21.20681 -21.04635 -20.59500 -19.53947 -18.61909 -16.88254 -16.40999 -16.28494 -15.94355 -15.55649 -15.38966 -14.88200 -14.59211 -14.41299 -13.98114 -13.73049 -13.29837 -12.92512 -12.48241 -12.24311 -11.91133 -11.77074 -11.58346 -11.51075 -10.87534 -10.72856 -10.67883 -10.56768 -10.24425 -9.81563 -9.76920 -9.33669 -9.10166 -8.95913 -8.64741 -8.34401 -7.95138 -5.98894 -4.01953 0.60435 0.63890 1.33315 1.94040 2.26843 2.64295 2.94816 3.32667 3.38880 3.41705 3.58973 4.11530 4.25217 4.46672 4.59689 4.76620 4.96234 5.04518 5.12544 5.28292 5.36701 5.42649 5.77496 5.80955 5.85767 6.23303 6.23822 6.56256 6.59380 6.66672 6.91559 7.06518 7.58407 7.67336 7.80505 7.83744 8.00299 8.41062 8.56362 9.04901 9.62012 11.12399 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.049271 B = 0.002153 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.152602 B =13000.301429 C =13341.179071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.730 5.730 13 C 0.509 3.491 14 O -0.524 6.524 15 C -0.059 4.059 16 C 0.069 3.931 17 C -0.049 4.049 18 N -0.411 5.411 19 C 0.052 3.948 20 C -0.228 4.228 21 S 0.185 5.815 22 C 0.135 3.865 23 N -0.424 5.424 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -30.590 -2.381 31.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.382 5.382 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.100 4.100 16 C -0.063 4.063 17 C -0.182 4.182 18 N -0.090 5.090 19 C -0.078 4.078 20 C -0.365 4.365 21 S 0.434 5.566 22 C -0.232 4.232 23 N -0.146 5.146 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.201 0.799 35 H 0.198 0.802 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.031 -30.305 -0.717 30.580 hybrid contribution 2.107 0.679 -1.923 2.933 sum 6.139 -29.625 -2.640 30.370 Atomic orbital electron populations 1.69973 1.06058 1.26647 1.50611 1.25042 0.94863 0.99309 0.95341 0.86578 0.79799 0.83458 0.78055 1.20689 1.21228 1.19894 1.21210 0.92984 0.90957 1.50828 0.92639 1.19036 0.93895 0.90891 0.97651 1.21877 0.99720 0.93396 1.00805 1.21601 0.91890 0.85083 1.01879 1.46170 1.10644 1.05806 1.75557 1.20268 0.89672 0.83699 0.77039 1.90748 1.16651 1.84482 1.48040 1.19998 0.96802 0.87864 1.05317 1.20000 0.97333 0.95610 0.93387 1.22441 1.01881 0.88505 1.05324 1.43863 1.29979 1.12892 1.22302 1.20355 1.00157 0.84655 1.02601 1.25094 1.04062 1.06169 1.01221 1.84856 1.39734 1.03279 1.28690 1.26257 1.04525 0.98911 0.93465 1.70535 1.11197 1.06043 1.26837 0.92947 0.96328 0.96255 0.92732 0.92779 0.91991 0.91869 0.76933 0.87221 0.87274 0.79872 0.80239 0.78754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.12 2.17 5.67 -4.04 -0.02 2.15 16 12 N -0.73 -10.66 5.56 -60.29 -0.33 -11.00 16 13 C 0.51 7.92 7.82 -10.99 -0.09 7.83 16 14 O -0.52 -10.84 15.56 5.56 0.09 -10.75 16 15 C -0.06 -0.63 6.26 -29.03 -0.18 -0.81 16 16 C 0.07 0.91 5.84 -83.08 -0.49 0.42 16 17 C -0.05 -0.52 11.91 -15.71 -0.19 -0.71 16 18 N -0.41 -4.42 3.19 -63.77 -0.20 -4.62 16 19 C 0.05 0.35 11.26 -16.71 -0.19 0.16 16 20 C -0.23 -1.30 11.11 29.04 0.32 -0.98 16 21 S 0.19 1.70 23.37 -107.50 -2.51 -0.81 16 22 C 0.13 1.81 8.93 -88.71 -0.79 1.02 16 23 N -0.42 -6.87 10.68 -9.77 -0.10 -6.97 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.40 4.42 8.47 -40.82 -0.35 4.08 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 0.75 8.10 -51.93 -0.42 0.32 16 34 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.18 0.54 8.06 -52.48 -0.42 0.11 16 36 H 0.20 0.35 8.06 -52.48 -0.42 -0.07 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -38.17 329.90 -9.23 -47.40 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.54 Total: -1.90 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.31 Total: -6.54 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.09 Total: -49.06 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.51 Total: -0.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.17 -9.23 -47.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.424 kcal (2) G-P(sol) polarization free energy of solvation -38.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds