Wall clock time and date at job start Tue Mar 31 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99864 * 2 1 4 4 H 1.48498 * 109.46921 * 270.00131 * 3 2 1 5 5 H 1.48491 * 109.47031 * 30.00069 * 3 2 1 6 6 H 1.48499 * 109.46842 * 149.99934 * 3 2 1 7 7 C 1.37874 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99680 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46898 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.47038 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99902 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99533 * 180.02562 * 13 12 11 16 16 C 1.50705 * 109.46664 * 180.02562 * 15 13 12 17 17 C 1.34331 * 125.80755 * 124.99939 * 16 15 13 18 18 N 1.38926 * 107.12220 * 179.73806 * 17 16 15 19 19 C 1.37486 * 139.53714 * 180.21625 * 18 17 16 20 20 C 1.30909 * 116.32362 * 180.02562 * 19 18 17 21 21 S 1.75773 * 109.81852 * 359.97438 * 20 19 18 22 22 C 1.35147 * 106.52943 * 0.24591 * 18 17 16 23 23 N 1.32356 * 108.82339 * 359.97438 * 22 18 17 24 24 H 0.97003 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47314 * 59.99909 * 9 7 2 26 26 H 1.08999 * 109.46835 * 299.99938 * 9 7 2 27 27 H 1.09004 * 109.47152 * 59.99823 * 10 9 7 28 28 H 1.08999 * 109.47287 * 299.99674 * 10 9 7 29 29 H 1.08995 * 109.47113 * 60.00442 * 11 10 9 30 30 H 1.09000 * 109.47807 * 299.99602 * 11 10 9 31 31 H 0.96997 * 119.99425 * 0.02562 * 12 11 10 32 32 H 1.08991 * 109.47398 * 60.00743 * 15 13 12 33 33 H 1.08999 * 109.47454 * 300.00087 * 15 13 12 34 34 H 1.08002 * 126.44106 * 0.02562 * 17 16 15 35 35 H 1.08003 * 121.83610 * 0.04928 * 19 18 17 36 36 H 1.08004 * 125.08820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 7 2.4323 -6.1006 -0.0049 13 6 1.9830 -7.3713 -0.0051 14 8 0.7907 -7.5929 -0.0044 15 6 2.9624 -8.5166 -0.0062 16 6 2.2089 -9.8218 -0.0068 17 6 2.3568 -10.8142 -0.8999 18 7 1.4821 -11.8290 -0.5323 19 6 1.1017 -13.0835 -0.9470 20 6 0.1830 -13.6785 -0.2290 21 16 -0.2985 -12.6382 1.1035 22 6 0.8355 -11.3976 0.5733 23 7 1.2764 -10.1882 0.8812 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8720 -3.6050 0.8873 28 1 2.8719 -3.6035 -0.8927 29 1 0.8534 -5.0442 -0.8931 30 1 0.8539 -5.0454 0.8869 31 1 3.3859 -5.9233 -0.0051 32 1 3.5895 -8.4593 0.8834 33 1 3.5885 -8.4586 -0.8965 34 1 3.0324 -10.8236 -1.7425 35 1 1.5373 -13.5523 -1.8170 36 1 -0.2189 -14.6614 -0.4259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171506490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:55 Heat of formation + Delta-G solvation = 23.202567 kcal Electronic energy + Delta-G solvation = -19494.265847 eV Core-core repulsion = 16298.183980 eV Total energy + Delta-G solvation = -3196.081867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.60527 -40.57941 -37.64242 -36.85239 -35.15603 -33.32212 -32.35485 -31.70429 -29.12205 -27.78161 -25.02428 -24.93560 -22.29177 -22.26389 -21.73400 -20.71556 -19.29503 -18.54940 -17.94688 -17.07986 -16.88562 -16.75547 -16.57694 -16.42967 -15.78076 -15.40062 -15.17295 -14.67464 -14.40468 -14.20624 -13.80415 -13.69854 -13.56926 -13.15426 -12.74284 -12.55332 -12.53903 -12.36326 -12.19321 -11.66042 -11.57942 -11.48382 -11.23714 -11.13803 -10.77903 -10.55661 -10.03682 -9.73862 -8.68360 -8.19296 -6.31260 -0.08884 0.00787 0.77203 1.30196 1.41684 1.43694 1.54678 1.62384 1.75065 1.76974 2.38211 2.46899 3.14211 3.40267 3.54583 4.02057 4.13632 4.21315 4.25291 4.31399 4.41708 4.53998 4.56216 4.60629 4.70282 4.95266 5.02450 5.12683 5.17871 5.43953 5.48110 5.55770 5.70528 5.84106 5.92816 6.21960 6.68788 6.78384 6.86703 7.38154 7.39933 8.93002 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.049271 B = 0.002153 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.152602 B =13000.301429 C =13341.179071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.132 3.868 12 N -0.715 5.715 13 C 0.505 3.495 14 O -0.583 6.583 15 C -0.046 4.046 16 C 0.028 3.972 17 C -0.034 4.034 18 N -0.412 5.412 19 C 0.035 3.965 20 C -0.203 4.203 21 S 0.160 5.840 22 C 0.097 3.903 23 N -0.486 5.486 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.012 1.012 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.418 0.582 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.228 0.772 35 H 0.224 0.776 36 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.170 -32.191 -3.904 33.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.007 3.993 12 N -0.369 5.369 13 C 0.292 3.708 14 O -0.462 6.462 15 C -0.086 4.086 16 C -0.103 4.103 17 C -0.167 4.167 18 N -0.092 5.092 19 C -0.092 4.092 20 C -0.339 4.339 21 S 0.409 5.591 22 C -0.269 4.269 23 N -0.209 5.209 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.007 0.993 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.256 0.744 32 H 0.148 0.852 33 H 0.175 0.825 34 H 0.244 0.756 35 H 0.240 0.760 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.023 -31.938 -2.248 32.778 hybrid contribution 1.122 1.069 -1.456 2.127 sum 8.145 -30.869 -3.705 32.140 Atomic orbital electron populations 1.70131 1.08055 1.27794 1.51761 1.26086 0.95780 1.03761 0.94800 0.85368 0.78651 0.78036 0.78499 1.19693 1.21145 1.18281 1.21688 0.93823 0.91883 1.50350 0.91283 1.18963 0.94525 0.93267 0.94841 1.21581 0.98326 0.91518 1.02298 1.21145 0.92124 0.86002 1.00005 1.45925 1.11099 1.04771 1.75080 1.21221 0.89819 0.84603 0.75172 1.90727 1.19575 1.85298 1.50592 1.20088 0.95510 0.84504 1.08469 1.20501 0.98169 0.97361 0.94310 1.23084 1.01177 0.87418 1.05037 1.44207 1.29399 1.14066 1.21510 1.21100 1.00691 0.83328 1.04080 1.25645 1.02918 1.06782 0.98584 1.84858 1.39582 1.03649 1.31036 1.26690 1.05947 0.99191 0.95065 1.70395 1.13249 1.08031 1.29248 0.92841 0.99137 0.99342 0.91306 0.90914 0.93721 0.94250 0.74433 0.85236 0.82549 0.75587 0.75978 0.74486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.13 4.96 5.67 86.38 0.49 5.45 16 12 N -0.72 -20.29 5.56 -463.05 -2.57 -22.86 16 13 C 0.50 15.62 7.82 87.66 0.69 16.30 16 14 O -0.58 -25.18 15.56 -3.03 -0.05 -25.23 16 15 C -0.05 -0.89 6.26 29.10 0.18 -0.71 16 16 C 0.03 0.72 5.84 41.36 0.24 0.96 16 17 C -0.03 -0.64 11.91 82.67 0.98 0.34 16 18 N -0.41 -8.22 3.19 -355.67 -1.13 -9.35 16 19 C 0.03 0.36 11.26 83.86 0.94 1.31 16 20 C -0.20 -1.76 11.11 67.87 0.75 -1.00 16 21 S 0.16 2.97 23.37 -56.49 -1.32 1.65 16 22 C 0.10 2.65 8.93 179.68 1.60 4.26 16 23 N -0.49 -16.34 10.68 -184.82 -1.97 -18.32 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.42 8.27 8.47 -92.71 -0.79 7.48 16 32 H 0.13 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.16 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.22 0.25 8.06 -2.91 -0.02 0.22 16 36 H 0.24 -0.20 8.06 -2.91 -0.02 -0.22 16 Total: -1.00 -89.85 329.90 2.47 -87.38 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.32 Total: 4.41 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.89 Total: -5.87 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -5.39 Total: -108.72 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.32 Total: 1.65 kcal Total: -89.85 2.47 -87.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.579 kcal (2) G-P(sol) polarization free energy of solvation -89.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds