Wall clock time and date at job start Tue Mar 31 2020 07:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21700 * 119.99774 * 0.02562 * 14 13 3 16 16 C 1.46384 * 119.99965 * 179.97438 * 14 13 3 17 17 C 1.34854 * 119.99679 * 180.02562 * 16 14 13 18 18 C 1.47166 * 119.99679 * 180.02562 * 17 16 14 19 19 C 1.39862 * 120.15552 * 359.72341 * 18 17 16 20 20 C 1.37835 * 119.84167 * 179.78548 * 19 18 17 21 21 C 1.38556 * 120.15170 * 0.49438 * 20 19 18 22 22 Cl 1.73598 * 119.84023 * 179.76276 * 21 20 19 23 23 C 1.38540 * 120.31933 * 359.73970 * 21 20 19 24 24 C 1.37838 * 120.15605 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.07998 * 120.00402 * 0.02562 * 16 14 13 33 33 H 1.07994 * 120.00397 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.08249 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.92818 * 180.20567 * 20 19 18 36 36 H 1.07997 * 119.92505 * 180.02562 * 23 21 20 37 37 H 1.08011 * 120.08094 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4313 16 6 0.0477 3.3182 2.6181 17 6 -1.1705 3.8850 2.7335 18 6 -1.5598 4.5429 3.9910 19 6 -0.6711 4.5772 5.0704 20 6 -1.0407 5.1990 6.2437 21 6 -2.2932 5.7802 6.3587 22 17 -2.7526 6.5558 7.8423 23 6 -3.1805 5.7458 5.2953 24 6 -2.8224 5.1317 4.1143 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.7374 3.3468 3.4487 33 1 -1.8604 3.8562 1.9031 34 1 0.3040 4.1209 4.9836 35 1 -0.3543 5.2291 7.0770 36 1 -4.1549 6.2013 5.3917 37 1 -3.5153 5.1052 3.2861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183948884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:00 Heat of formation + Delta-G solvation = -15.268541 kcal Electronic energy + Delta-G solvation = -19890.875411 eV Core-core repulsion = 16658.788854 eV Total energy + Delta-G solvation = -3232.086557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68396 -38.91984 -36.83493 -35.21817 -33.78174 -32.38315 -31.46232 -31.00320 -29.41259 -27.03432 -24.34818 -23.21755 -22.83200 -21.23883 -19.54990 -19.16884 -17.73105 -17.12636 -16.08592 -15.67157 -15.30042 -15.08493 -14.47650 -14.26874 -14.06804 -13.84747 -13.80347 -13.23512 -12.70007 -12.32374 -12.23137 -11.98180 -11.82589 -11.56096 -11.51177 -11.26390 -11.05479 -10.96978 -10.86228 -10.32431 -10.20667 -10.11363 -9.64022 -9.39202 -9.12809 -9.04237 -8.51807 -8.33178 -7.81059 -6.14024 -4.23429 0.33543 1.00015 1.81513 1.93012 3.22407 3.30476 3.32865 3.42473 3.99675 4.04020 4.34453 4.42446 4.54189 4.75117 4.95261 5.03978 5.12301 5.17607 5.37445 5.60826 5.64238 5.85214 5.91627 5.94212 6.38276 6.39752 6.45249 6.45816 6.53220 6.65684 7.03585 7.19471 7.35478 7.43306 7.60960 7.72549 7.88869 8.16598 8.64950 8.76168 9.11128 9.44054 10.91395 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002614 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.998862 B =10709.906485 C =11331.857193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.551 6.551 16 C -0.176 4.176 17 C -0.058 4.058 18 C -0.051 4.051 19 C -0.097 4.097 20 C -0.109 4.109 21 C -0.036 4.036 22 Cl -0.075 7.075 23 C -0.111 4.111 24 C -0.091 4.091 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 9.024 16.684 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.313 3.687 15 O -0.432 6.432 16 C -0.197 4.197 17 C -0.078 4.078 18 C -0.052 4.052 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.063 4.063 22 Cl -0.046 7.046 23 C -0.130 4.130 24 C -0.109 4.109 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.580 8.945 15.935 21.115 hybrid contribution 1.315 0.022 0.453 1.391 sum -9.265 8.966 16.388 20.852 Atomic orbital electron populations 1.21841 0.98328 0.98037 1.01249 1.21932 0.92643 0.99739 1.02303 1.18818 0.94267 0.89239 0.81002 0.93207 1.21267 0.90693 1.38969 1.06297 0.92032 1.24891 0.98628 0.94810 0.95388 1.69901 1.35050 1.37640 1.09340 0.86403 0.84857 0.77775 0.78124 1.19742 1.20876 1.20881 1.46447 1.14437 1.55225 1.18549 1.18174 0.83077 0.79806 0.87600 1.90784 1.51517 1.60405 1.40467 1.23349 0.97626 1.00321 0.98398 1.22237 0.96639 0.93869 0.95084 1.19234 0.94143 0.97879 0.93907 1.21445 0.99946 0.98284 0.91867 1.20992 0.94902 0.98136 0.98763 1.21084 0.95924 1.00756 0.88489 1.98371 1.92473 1.79742 1.34007 1.20984 0.99609 1.00332 0.92041 1.21361 0.95744 0.96465 0.97339 0.94265 0.95861 0.93144 0.95028 0.88268 0.92599 0.77869 0.85858 0.84410 0.84391 0.84720 0.84753 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -14.14 5.02 -56.34 -0.28 -14.43 16 14 C 0.53 10.13 6.31 -12.98 -0.08 10.04 16 15 O -0.55 -12.50 13.36 5.19 0.07 -12.43 16 16 C -0.18 -2.48 9.41 -37.51 -0.35 -2.84 16 17 C -0.06 -0.75 9.46 -37.16 -0.35 -1.10 16 18 C -0.05 -0.55 5.87 -105.06 -0.62 -1.17 16 19 C -0.10 -0.94 9.41 -39.12 -0.37 -1.30 16 20 C -0.11 -0.98 9.81 -39.61 -0.39 -1.37 16 21 C -0.04 -0.33 6.33 -39.35 -0.25 -0.58 16 22 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.15 16 23 C -0.11 -0.97 9.81 -39.62 -0.39 -1.36 16 24 C -0.09 -0.85 9.79 -39.12 -0.38 -1.23 16 25 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 6.75 8.52 -40.82 -0.35 6.40 16 32 H 0.12 1.36 6.07 -52.49 -0.32 1.04 16 33 H 0.14 1.86 7.52 -52.49 -0.39 1.47 16 34 H 0.14 1.13 6.17 -52.48 -0.32 0.80 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -29.74 327.69 -9.17 -38.91 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.44 Total: 6.52 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.56 Total: -12.87 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.34 Total: -38.29 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.74 -9.17 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.642 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds