Wall clock time and date at job start Tue Mar 31 2020 07:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21700 * 119.99774 * 0.02562 * 14 13 3 16 16 C 1.46384 * 119.99965 * 179.97438 * 14 13 3 17 17 C 1.34854 * 119.99679 * 180.02562 * 16 14 13 18 18 C 1.47166 * 119.99679 * 180.02562 * 17 16 14 19 19 C 1.39862 * 120.15552 * 359.72341 * 18 17 16 20 20 C 1.37835 * 119.84167 * 179.78548 * 19 18 17 21 21 C 1.38556 * 120.15170 * 0.49438 * 20 19 18 22 22 Cl 1.73598 * 119.84023 * 179.76276 * 21 20 19 23 23 C 1.38540 * 120.31933 * 359.73970 * 21 20 19 24 24 C 1.37838 * 120.15605 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.07998 * 120.00402 * 0.02562 * 16 14 13 33 33 H 1.07994 * 120.00397 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.08249 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.92818 * 180.20567 * 20 19 18 36 36 H 1.07997 * 119.92505 * 180.02562 * 23 21 20 37 37 H 1.08011 * 120.08094 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4313 16 6 0.0477 3.3182 2.6181 17 6 -1.1705 3.8850 2.7335 18 6 -1.5598 4.5429 3.9910 19 6 -0.6711 4.5772 5.0704 20 6 -1.0407 5.1990 6.2437 21 6 -2.2932 5.7802 6.3587 22 17 -2.7526 6.5558 7.8423 23 6 -3.1805 5.7458 5.2953 24 6 -2.8224 5.1317 4.1143 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.7374 3.3468 3.4487 33 1 -1.8604 3.8562 1.9031 34 1 0.3040 4.1209 4.9836 35 1 -0.3543 5.2291 7.0770 36 1 -4.1549 6.2013 5.3917 37 1 -3.5153 5.1052 3.2861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:59 Heat of formation + Delta-G solvation = -31.702248 kcal Electronic energy + Delta-G solvation = -19891.588030 eV Core-core repulsion = 16658.788854 eV Total energy + Delta-G solvation = -3232.799176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77773 -40.15273 -37.56046 -36.97953 -34.83496 -34.26913 -32.79560 -32.14878 -30.43849 -28.88967 -25.64698 -24.62623 -23.82983 -22.50373 -21.30052 -20.51715 -18.91606 -18.31475 -17.50437 -17.21806 -16.42960 -16.22360 -16.15292 -15.75971 -15.05871 -14.77327 -14.57466 -14.53000 -14.46225 -13.85499 -13.49439 -13.25848 -13.17362 -12.87087 -12.79920 -12.69595 -12.63847 -12.33998 -12.13915 -12.03809 -11.74418 -11.58902 -11.04926 -11.03160 -10.73845 -10.51730 -10.07420 -9.64294 -9.14720 -8.15464 -6.32583 -0.54820 0.31726 0.93597 1.11977 1.44581 1.45931 1.57528 2.36890 2.43320 2.70920 2.81655 3.14303 3.69392 3.73459 3.90096 4.18288 4.22263 4.30835 4.40294 4.50353 4.58493 4.67583 4.77528 4.95172 5.05291 5.07324 5.11132 5.21678 5.25971 5.42332 5.45671 5.57229 5.60359 5.65127 5.74847 5.81502 5.96243 6.18184 6.76064 7.03205 7.34795 7.61410 8.90195 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002614 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.998862 B =10709.906485 C =11331.857193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.524 3.476 15 O -0.595 6.595 16 C -0.196 4.196 17 C -0.029 4.029 18 C -0.074 4.074 19 C -0.094 4.094 20 C -0.114 4.114 21 C -0.038 4.038 22 Cl -0.069 7.069 23 C -0.115 4.115 24 C -0.089 4.089 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.158 0.842 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 9.802 19.262 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.347 5.347 14 C 0.314 3.686 15 O -0.479 6.479 16 C -0.217 4.217 17 C -0.049 4.049 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.133 4.133 21 C -0.065 4.065 22 Cl -0.041 7.041 23 C -0.133 4.133 24 C -0.107 4.107 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.176 0.824 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.270 9.738 18.562 23.342 hybrid contribution 1.061 -0.112 -0.265 1.099 sum -9.209 9.626 18.297 22.633 Atomic orbital electron populations 1.21675 0.96978 0.99096 1.00274 1.21783 0.93771 0.99154 1.01298 1.18382 0.93680 0.89213 0.81464 0.98419 1.21614 0.91421 1.38756 1.06655 0.90977 1.25778 1.03305 0.94439 0.95065 1.70054 1.36991 1.38461 1.09896 0.85325 0.79172 0.77798 0.78205 1.18366 1.20495 1.21106 1.46187 1.15479 1.55492 1.17556 1.18921 0.81979 0.78894 0.88818 1.90760 1.52571 1.61993 1.42554 1.23088 0.99217 1.02324 0.97043 1.22308 0.95543 0.91590 0.95500 1.19171 0.95348 0.99502 0.93383 1.21641 1.00293 0.97734 0.91533 1.21218 0.95177 0.97762 0.99121 1.21315 0.96172 1.00239 0.88769 1.98379 1.92431 1.79578 1.33663 1.21206 1.00421 1.00125 0.91590 1.21573 0.95454 0.95625 0.98042 0.93707 0.93626 0.95594 0.94003 0.91052 0.92630 0.76027 0.82439 0.85677 0.82923 0.82939 0.82932 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.76 5.29 84.66 0.45 1.20 16 8 N -0.92 -52.31 11.29 21.45 0.24 -52.07 16 9 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.70 -28.44 5.02 -450.38 -2.26 -30.69 16 14 C 0.52 20.34 6.31 86.36 0.54 20.89 16 15 O -0.59 -28.00 13.36 -4.35 -0.06 -28.06 16 16 C -0.20 -5.30 9.41 23.61 0.22 -5.08 16 17 C -0.03 -0.72 9.46 23.84 0.23 -0.49 16 18 C -0.07 -1.43 5.87 -20.15 -0.12 -1.54 16 19 C -0.09 -1.55 9.41 22.57 0.21 -1.34 16 20 C -0.11 -1.72 9.81 22.25 0.22 -1.50 16 21 C -0.04 -0.61 6.33 22.42 0.14 -0.46 16 22 Cl -0.07 -1.03 28.95 -2.72 -0.08 -1.11 16 23 C -0.11 -1.71 9.81 22.25 0.22 -1.49 16 24 C -0.09 -1.46 9.79 22.57 0.22 -1.24 16 25 H 0.04 1.95 5.64 -2.39 -0.01 1.93 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.02 1.26 7.84 -2.38 -0.02 1.24 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.40 13.68 8.52 -92.71 -0.79 12.89 16 32 H 0.16 3.06 6.07 -2.91 -0.02 3.04 16 33 H 0.13 3.37 7.52 -2.91 -0.02 3.34 16 34 H 0.15 1.99 6.17 -2.91 -0.02 1.97 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -66.07 327.69 3.61 -62.46 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.31 Total: 21.67 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.44 Total: -16.04 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -2.02 Total: -82.76 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -66.07 3.61 -62.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.756 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds