Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47136 * 179.97438 * 16 14 13 18 18 C 1.34342 * 125.80768 * 124.71555 * 17 16 14 19 19 N 1.38932 * 107.12100 * 179.84973 * 18 17 16 20 20 C 1.37479 * 139.53427 * 180.02562 * 19 18 17 21 21 C 1.30909 * 116.32244 * 180.36838 * 20 19 18 22 22 S 1.75780 * 109.81865 * 0.02562 * 21 20 19 23 23 C 1.35152 * 106.52610 * 0.40461 * 19 18 17 24 24 N 1.32356 * 108.82326 * 359.74898 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 33 33 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 34 34 H 1.07996 * 126.43933 * 359.95713 * 18 17 16 35 35 H 1.08008 * 121.84071 * 0.34663 * 20 19 18 36 36 H 1.07997 * 125.08829 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3346 3.8755 -2.5687 18 6 -1.7002 5.1494 -2.7881 19 7 -3.0715 5.2235 -2.5775 20 6 -4.0867 6.1499 -2.6135 21 6 -5.2829 5.7122 -2.3113 22 16 -5.2124 3.9964 -1.9359 23 6 -3.4744 3.9816 -2.2284 24 7 -2.4237 3.1768 -2.2255 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5271 2.3972 31 1 2.2931 2.1156 -1.9978 32 1 0.7582 4.1421 -2.8918 33 1 0.1042 2.5999 -3.4936 34 1 -1.0506 5.9627 -3.0760 35 1 -3.9072 7.1820 -2.8763 36 1 -6.1786 6.3152 -2.2944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183949683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = 59.909111 kcal Electronic energy + Delta-G solvation = -20824.280316 eV Core-core repulsion = 17629.790164 eV Total energy + Delta-G solvation = -3194.490152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.65859 -39.00461 -36.74792 -35.01033 -32.33137 -31.90844 -30.90729 -30.68537 -27.85299 -26.74463 -24.15460 -22.75148 -21.39836 -20.86949 -19.79181 -19.36034 -18.45743 -17.24314 -16.21295 -16.05952 -15.63223 -15.48083 -15.15482 -14.56942 -14.30826 -14.01789 -13.57773 -13.24653 -12.75468 -12.67557 -12.55263 -11.99728 -11.80442 -11.68606 -11.46471 -11.39495 -10.88542 -10.58761 -10.56510 -10.55055 -10.02672 -9.84138 -9.79259 -9.14587 -9.03265 -8.73088 -8.64102 -7.86259 -7.78647 -6.18619 -4.21227 0.75752 0.79395 1.47347 2.11046 2.44664 2.88749 3.30699 3.38203 3.47354 3.47770 4.15592 4.33076 4.38030 4.46886 4.79686 4.92718 5.17123 5.18526 5.27370 5.58667 5.66535 5.72070 5.96135 6.18790 6.23192 6.38761 6.46772 6.74927 6.78530 6.91950 7.10271 7.16207 7.41401 7.45923 7.68325 7.79281 8.22832 8.68436 8.83066 9.16403 9.44874 10.93230 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.003666 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.795164 B = 7636.440041 C = 7763.692016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.240 3.760 4 H 0.048 0.952 5 C -0.529 4.529 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.258 1.258 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.503 3.497 15 O -0.533 6.533 16 C -0.063 4.063 17 C 0.077 3.923 18 C -0.053 4.053 19 N -0.412 5.412 20 C 0.054 3.946 21 C -0.231 4.231 22 S 0.179 5.821 23 C 0.133 3.867 24 N -0.420 5.420 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.922 10.078 -11.385 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.137 3.863 4 H 0.066 0.934 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.528 5.528 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.182 1.182 12 H -0.213 1.213 13 N -0.357 5.357 14 C 0.287 3.713 15 O -0.410 6.410 16 C -0.105 4.105 17 C -0.055 4.055 18 C -0.185 4.185 19 N -0.092 5.092 20 C -0.075 4.075 21 C -0.369 4.369 22 S 0.428 5.572 23 C -0.233 4.233 24 N -0.142 5.142 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.225 0.775 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.200 0.800 35 H 0.196 0.804 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.261 8.318 -10.007 24.080 hybrid contribution 0.951 2.147 -0.054 2.349 sum -19.310 10.466 -10.061 24.158 Atomic orbital electron populations 1.21890 0.97158 0.98708 1.02340 1.22082 0.93834 0.99502 1.00993 1.19089 0.95239 0.89022 0.82918 0.93429 1.21043 0.88804 1.51938 0.94887 0.90362 1.24911 0.94832 0.93732 0.98838 1.69883 1.09612 1.49047 1.24284 0.86929 0.81385 0.79433 0.82393 1.20013 1.18231 1.21294 1.46481 1.14499 1.56585 1.18116 1.20140 0.82668 0.79598 0.88912 1.90704 1.50355 1.58950 1.40988 1.20080 0.90130 1.01607 0.98644 1.20081 0.94366 0.89715 1.01328 1.22469 0.80592 1.00315 1.15096 1.43855 1.07795 1.08822 1.48734 1.20346 0.86135 0.96361 1.04684 1.25045 1.01033 0.99935 1.10854 1.84760 0.92244 1.03955 1.76266 1.26219 1.01452 0.84987 1.10632 1.70542 0.95271 1.30298 1.18125 0.95358 0.93346 0.92630 0.93085 0.92377 0.92336 0.77511 0.87608 0.87688 0.79962 0.80366 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.53 37.16 0.32 -2.78 16 2 C -0.12 -2.83 5.54 -26.73 -0.15 -2.98 16 3 C 0.24 5.79 1.82 -69.08 -0.13 5.66 16 4 H 0.05 1.27 4.92 -51.93 -0.26 1.01 16 5 C -0.53 -14.31 9.05 -34.44 -0.31 -14.63 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 8 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.87 22.06 26.69 -169.99 -4.54 17.52 16 10 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.48 6.88 56.52 0.39 -6.09 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.71 -14.21 5.03 -54.93 -0.28 -14.48 16 14 C 0.50 9.78 6.42 -10.98 -0.07 9.71 16 15 O -0.53 -12.54 12.70 5.55 0.07 -12.47 16 16 C -0.06 -0.90 6.26 -29.04 -0.18 -1.08 16 17 C 0.08 1.21 5.84 -83.08 -0.49 0.72 16 18 C -0.05 -0.68 11.91 -15.70 -0.19 -0.87 16 19 N -0.41 -5.22 3.19 -63.77 -0.20 -5.42 16 20 C 0.05 0.46 11.26 -16.71 -0.19 0.27 16 21 C -0.23 -1.66 11.11 29.04 0.32 -1.34 16 22 S 0.18 1.91 23.37 -107.50 -2.51 -0.60 16 23 C 0.13 2.03 8.93 -88.71 -0.79 1.24 16 24 N -0.42 -7.63 10.68 -9.77 -0.10 -7.74 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 27 H 0.05 1.22 5.63 -51.93 -0.29 0.92 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.39 6.79 8.59 -40.82 -0.35 6.44 16 32 H 0.11 1.14 8.10 -51.92 -0.42 0.72 16 33 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.19 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -36.11 316.85 -8.21 -44.32 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.25 Total: 3.73 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.95 Total: -3.88 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.19 Total: -53.38 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.54 Total: 17.52 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.51 Total: -0.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.11 -8.21 -44.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.227 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds