Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.50698 * 109.47136 * 179.97438 * 16 14 13 18 18 C 1.34342 * 125.80768 * 124.71555 * 17 16 14 19 19 N 1.38932 * 107.12100 * 179.84973 * 18 17 16 20 20 C 1.37479 * 139.53427 * 180.02562 * 19 18 17 21 21 C 1.30909 * 116.32244 * 180.36838 * 20 19 18 22 22 S 1.75780 * 109.81865 * 0.02562 * 21 20 19 23 23 C 1.35152 * 106.52610 * 0.40461 * 19 18 17 24 24 N 1.32356 * 108.82326 * 359.74898 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 33 33 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 34 34 H 1.07996 * 126.43933 * 359.95713 * 18 17 16 35 35 H 1.08008 * 121.84071 * 0.34663 * 20 19 18 36 36 H 1.07997 * 125.08829 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3346 3.8755 -2.5687 18 6 -1.7002 5.1494 -2.7881 19 7 -3.0715 5.2235 -2.5775 20 6 -4.0867 6.1499 -2.6135 21 6 -5.2829 5.7122 -2.3113 22 16 -5.2124 3.9964 -1.9359 23 6 -3.4744 3.9816 -2.2284 24 7 -2.4237 3.1768 -2.2255 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5271 2.3972 31 1 2.2931 2.1156 -1.9978 32 1 0.7582 4.1421 -2.8918 33 1 0.1042 2.5999 -3.4936 34 1 -1.0506 5.9627 -3.0760 35 1 -3.9072 7.1820 -2.8763 36 1 -6.1786 6.3152 -2.2944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183949683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = 34.700308 kcal Electronic energy + Delta-G solvation = -20825.373452 eV Core-core repulsion = 17629.790164 eV Total energy + Delta-G solvation = -3195.583288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57271 -40.58962 -37.67900 -36.76972 -34.35497 -33.45861 -32.14469 -31.67001 -29.55255 -28.04815 -24.98442 -24.69078 -22.77743 -21.71793 -21.34406 -20.90276 -19.27253 -19.12562 -17.63392 -17.34074 -16.98717 -16.68627 -16.29581 -15.98916 -15.51301 -15.33955 -14.82615 -14.77214 -14.37074 -14.06784 -13.81236 -13.72365 -13.50470 -13.12620 -12.92396 -12.59316 -12.46986 -12.33593 -12.18457 -11.86199 -11.66394 -11.45936 -11.18520 -11.07772 -10.83795 -10.56010 -9.70754 -9.59747 -8.65703 -8.38148 -6.42284 -0.07263 0.02701 0.78409 1.27120 1.31669 1.32220 1.44108 1.65913 1.82484 1.98016 2.27157 2.67817 3.06284 3.44706 3.59951 4.10630 4.24373 4.32199 4.35569 4.42579 4.43069 4.55953 4.59297 4.62912 4.74512 4.86206 5.10389 5.13909 5.27906 5.30074 5.45313 5.48493 5.57571 5.85730 5.95292 6.18707 6.62887 6.81574 7.05205 7.24035 7.65982 8.76961 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.003666 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.795164 B = 7636.440041 C = 7763.692016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.246 3.754 4 H 0.023 0.977 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.036 3.964 8 N -0.930 5.930 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.260 1.260 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.575 6.575 16 C -0.050 4.050 17 C 0.036 3.964 18 C -0.040 4.040 19 N -0.413 5.413 20 C 0.034 3.966 21 C -0.203 4.203 22 S 0.164 5.836 23 C 0.098 3.902 24 N -0.479 5.479 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.223 0.777 35 H 0.222 0.778 36 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 12.120 -12.642 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.141 3.859 4 H 0.041 0.959 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.165 4.165 8 N -0.569 5.569 9 Si 0.747 3.253 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.203 1.203 13 N -0.357 5.357 14 C 0.287 3.713 15 O -0.455 6.455 16 C -0.090 4.090 17 C -0.095 4.095 18 C -0.172 4.172 19 N -0.093 5.093 20 C -0.093 4.093 21 C -0.340 4.340 22 S 0.412 5.588 23 C -0.268 4.268 24 N -0.202 5.202 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.242 0.758 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.239 0.761 35 H 0.238 0.762 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -22.049 10.382 -11.299 26.863 hybrid contribution 1.390 1.562 0.262 2.108 sum -20.659 11.944 -11.037 26.292 Atomic orbital electron populations 1.21720 0.96138 0.99814 1.00977 1.21999 0.94572 0.98470 1.01067 1.18779 0.93086 0.89912 0.84101 0.95934 1.21239 0.90250 1.50459 0.94097 0.92158 1.25512 0.95630 0.94064 1.01260 1.69967 1.10909 1.51014 1.25024 0.86140 0.79932 0.79049 0.80167 1.20245 1.18448 1.20261 1.46240 1.15547 1.56723 1.17173 1.21021 0.81394 0.78599 0.90331 1.90685 1.51411 1.60338 1.43086 1.20072 0.90593 1.02843 0.95530 1.20394 0.94415 0.91106 1.03557 1.23021 0.81154 1.00204 1.12853 1.44174 1.08385 1.08858 1.47845 1.21088 0.85382 0.97498 1.05294 1.25629 1.02362 0.97533 1.08437 1.84765 0.90147 1.07585 1.76336 1.26724 1.02600 0.86008 1.11442 1.70391 0.96956 1.32639 1.20239 0.92910 0.95542 0.93132 0.91800 0.93460 0.92100 0.75844 0.83763 0.85765 0.76067 0.76173 0.74440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.53 71.98 0.61 -4.94 16 2 C -0.12 -5.50 5.54 30.59 0.17 -5.33 16 3 C 0.25 11.88 1.82 44.25 0.08 11.96 16 4 H 0.02 1.22 4.92 -2.39 -0.01 1.21 16 5 C -0.52 -28.53 9.05 25.60 0.23 -28.30 16 6 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 7 C 0.04 2.03 5.47 84.65 0.46 2.50 16 8 N -0.93 -56.00 13.96 21.45 0.30 -55.70 16 9 Si 0.92 46.11 26.69 68.60 1.83 47.94 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.26 -12.98 6.88 99.48 0.68 -12.30 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 N -0.71 -28.03 5.03 -446.08 -2.24 -30.27 16 14 C 0.50 19.22 6.42 87.66 0.56 19.78 16 15 O -0.58 -27.48 12.70 -3.05 -0.04 -27.52 16 16 C -0.05 -1.33 6.26 29.10 0.18 -1.15 16 17 C 0.04 1.11 5.84 41.36 0.24 1.35 16 18 C -0.04 -0.92 11.91 82.68 0.98 0.06 16 19 N -0.41 -9.59 3.19 -355.66 -1.13 -10.72 16 20 C 0.03 0.45 11.26 83.86 0.94 1.39 16 21 C -0.20 -2.20 11.11 67.87 0.75 -1.44 16 22 S 0.16 3.34 23.37 -56.49 -1.32 2.02 16 23 C 0.10 2.95 8.93 179.68 1.60 4.55 16 24 N -0.48 -17.59 10.68 -184.82 -1.97 -19.57 16 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.03 1.22 7.88 -2.39 -0.02 1.20 16 27 H 0.05 2.21 5.63 -2.39 -0.01 2.20 16 28 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.05 2.21 7.90 -2.38 -0.02 2.19 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.41 13.67 8.59 -92.71 -0.80 12.88 16 32 H 0.14 2.64 8.10 -2.38 -0.02 2.62 16 33 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.24 0.25 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -82.23 316.85 2.55 -79.68 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.30 Total: 13.70 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.83 Total: 0.43 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -5.05 Total: -116.25 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.04 Total: -27.52 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.83 Total: 47.94 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.32 Total: 2.02 kcal Total: -82.23 2.55 -79.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.378 kcal (2) G-P(sol) polarization free energy of solvation -82.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds