Wall clock time and date at job start Tue Mar 31 2020 07:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.34342 * 125.80423 * 124.71643 * 17 16 14 19 19 N 1.38921 * 107.12480 * 179.85190 * 18 17 16 20 20 C 1.37486 * 139.53930 * 180.02562 * 19 18 17 21 21 C 1.30904 * 116.32320 * 180.37140 * 20 19 18 22 22 S 1.75788 * 109.81964 * 359.97438 * 21 20 19 23 23 C 1.35148 * 106.52542 * 0.40816 * 19 18 17 24 24 N 1.32354 * 108.82300 * 359.74794 * 23 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 33 33 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 34 34 H 1.08001 * 126.43666 * 359.97290 * 18 17 16 35 35 H 1.08001 * 121.83708 * 0.34588 * 20 19 18 36 36 H 1.08005 * 125.09478 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -2.3932 3.6117 3.3380 19 7 -3.4888 4.3224 2.8641 20 6 -4.8141 4.5265 3.1675 21 6 -5.4753 5.3275 2.3708 22 16 -4.4109 5.9195 1.1033 23 6 -3.0674 4.9931 1.7690 24 7 -1.7865 4.7253 1.5708 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6129 3.4685 33 1 0.7277 4.1529 2.8680 34 1 -2.3743 2.9623 4.2007 35 1 -5.2839 4.0517 4.0162 36 1 -6.5187 5.5860 2.4763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183949702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:37 Heat of formation + Delta-G solvation = 60.792509 kcal Electronic energy + Delta-G solvation = -20723.429189 eV Core-core repulsion = 17528.977344 eV Total energy + Delta-G solvation = -3194.451845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.60767 -38.84197 -36.68184 -34.88070 -32.32072 -31.63626 -30.75271 -30.49543 -27.60430 -26.40015 -24.10626 -22.99832 -21.24614 -20.81972 -19.72656 -19.12375 -18.40975 -16.99664 -16.10760 -15.96999 -15.47607 -15.23953 -14.91598 -14.72750 -14.18571 -14.08805 -13.51135 -12.88130 -12.77454 -12.66150 -12.42553 -11.75885 -11.57735 -11.39900 -11.19626 -11.17017 -10.92336 -10.73940 -10.51164 -10.24751 -10.09581 -9.95113 -9.55235 -8.98955 -8.91429 -8.63535 -8.41684 -7.74203 -7.66230 -6.05185 -4.14125 0.80545 0.84495 1.52415 2.15708 2.49544 2.95344 3.28560 3.35512 3.37929 3.60908 4.23366 4.34887 4.49203 4.53840 4.84583 4.97172 5.21342 5.25875 5.31713 5.63287 5.75443 5.80369 6.01065 6.45825 6.51636 6.53319 6.74398 6.80571 7.11448 7.29434 7.46566 7.59651 7.70649 7.83268 7.86340 8.00650 8.26880 8.80862 8.88486 9.31801 9.54081 11.00165 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.003226 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.592121 B = 8676.961047 C = 8702.837189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.713 5.713 14 C 0.503 3.497 15 O -0.528 6.528 16 C -0.064 4.064 17 C 0.079 3.921 18 C -0.055 4.055 19 N -0.412 5.412 20 C 0.054 3.946 21 C -0.232 4.232 22 S 0.180 5.820 23 C 0.134 3.866 24 N -0.419 5.419 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.020 0.980 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 7.776 13.955 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.362 5.362 14 C 0.287 3.713 15 O -0.405 6.405 16 C -0.106 4.106 17 C -0.053 4.053 18 C -0.187 4.187 19 N -0.092 5.092 20 C -0.076 4.076 21 C -0.369 4.369 22 S 0.429 5.571 23 C -0.232 4.232 24 N -0.142 5.142 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.218 0.782 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.199 0.801 35 H 0.196 0.804 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -16.102 8.791 11.387 21.592 hybrid contribution 0.894 -1.391 2.107 2.678 sum -15.208 7.400 13.494 21.636 Atomic orbital electron populations 1.21827 0.98435 0.97766 1.01262 1.21924 0.92507 0.99988 1.02106 1.18726 0.93999 0.89026 0.81252 0.93397 1.21256 0.90854 1.38722 1.06182 0.92118 1.24895 0.98496 0.94949 0.95432 1.69905 1.35023 1.37775 1.09330 0.86472 0.85064 0.78363 0.77330 1.20634 1.21141 1.19870 1.46439 1.14657 1.56666 1.18474 1.20018 0.82933 0.79586 0.88803 1.90710 1.51256 1.58485 1.40055 1.20094 0.91034 1.00762 0.98669 1.20085 0.95451 0.97627 0.92116 1.22437 0.84510 1.05929 1.05811 1.43854 1.08149 1.34713 1.22495 1.20332 0.82222 1.02111 1.02914 1.25046 1.05330 1.05783 1.00758 1.84771 0.94095 1.48890 1.29349 1.26219 0.98112 1.04953 0.93960 1.70559 1.04570 1.15924 1.23114 0.93250 0.94295 0.96101 0.95145 0.88439 0.92659 0.78157 0.87927 0.87771 0.80050 0.80416 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.15 5.45 -26.74 -0.15 -3.29 16 3 C 0.27 7.00 2.24 -69.08 -0.15 6.85 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.27 11.30 55.43 0.63 -24.64 16 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -14.97 5.02 -54.94 -0.28 -15.24 16 14 C 0.50 10.28 6.39 -10.99 -0.07 10.21 16 15 O -0.53 -13.12 12.70 5.56 0.07 -13.05 16 16 C -0.06 -0.96 6.26 -29.04 -0.18 -1.14 16 17 C 0.08 1.30 5.84 -83.08 -0.49 0.81 16 18 C -0.06 -0.73 11.91 -15.71 -0.19 -0.92 16 19 N -0.41 -5.38 3.19 -63.77 -0.20 -5.59 16 20 C 0.05 0.47 11.26 -16.71 -0.19 0.28 16 21 C -0.23 -1.75 11.11 29.04 0.32 -1.42 16 22 S 0.18 2.02 23.37 -107.50 -2.51 -0.50 16 23 C 0.13 2.12 8.92 -88.71 -0.79 1.33 16 24 N -0.42 -8.02 10.69 -9.77 -0.10 -8.12 16 25 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 6.88 8.54 -40.82 -0.35 6.54 16 32 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.19 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -35.56 317.35 -8.85 -44.40 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.25 Total: 5.04 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.96 Total: -3.01 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.04 Total: -53.59 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.56 -8.85 -44.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.197 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds