Wall clock time and date at job start Tue Mar 31 2020 07:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.34342 * 125.80423 * 124.71643 * 17 16 14 19 19 N 1.38921 * 107.12480 * 179.85190 * 18 17 16 20 20 C 1.37486 * 139.53930 * 180.02562 * 19 18 17 21 21 C 1.30904 * 116.32320 * 180.37140 * 20 19 18 22 22 S 1.75788 * 109.81964 * 359.97438 * 21 20 19 23 23 C 1.35148 * 106.52542 * 0.40816 * 19 18 17 24 24 N 1.32354 * 108.82300 * 359.74794 * 23 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 33 33 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 34 34 H 1.08001 * 126.43666 * 359.97290 * 18 17 16 35 35 H 1.08001 * 121.83708 * 0.34588 * 20 19 18 36 36 H 1.08005 * 125.09478 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -2.3932 3.6117 3.3380 19 7 -3.4888 4.3224 2.8641 20 6 -4.8141 4.5265 3.1675 21 6 -5.4753 5.3275 2.3708 22 16 -4.4109 5.9195 1.1033 23 6 -3.0674 4.9931 1.7690 24 7 -1.7865 4.7253 1.5708 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6129 3.4685 33 1 0.7277 4.1529 2.8680 34 1 -2.3743 2.9623 4.2007 35 1 -5.2839 4.0517 4.0162 36 1 -6.5187 5.5860 2.4763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183949702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:36 Heat of formation + Delta-G solvation = 36.216083 kcal Electronic energy + Delta-G solvation = -20724.494903 eV Core-core repulsion = 17528.977344 eV Total energy + Delta-G solvation = -3195.517559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.56957 -40.50866 -37.65661 -36.74291 -34.24314 -33.19042 -32.06871 -31.67265 -29.18906 -27.91893 -24.99462 -24.96917 -22.70782 -21.71139 -21.34605 -20.78178 -19.26944 -18.78518 -17.48817 -17.14895 -16.96801 -16.66439 -16.24212 -16.07003 -15.61869 -15.18940 -14.66419 -14.55949 -14.31076 -14.16177 -13.58324 -13.49818 -13.15918 -12.99811 -12.86534 -12.65036 -12.49243 -12.17572 -12.15248 -12.01905 -11.57040 -11.46007 -11.07179 -11.01302 -10.58501 -10.44296 -9.70167 -9.51172 -8.65937 -8.13688 -6.31159 -0.07016 0.03563 0.79596 1.33089 1.44855 1.46277 1.56595 1.67267 1.83875 2.03194 2.40452 2.85612 3.15493 3.45985 3.60461 4.12006 4.29112 4.36538 4.43879 4.49416 4.56107 4.57962 4.62587 4.74850 4.78658 5.08041 5.14852 5.26625 5.46507 5.47694 5.59323 5.70513 5.83575 5.96883 6.00909 6.20997 6.78646 6.83588 7.13369 7.37044 7.76048 8.91737 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.003226 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.592121 B = 8676.961047 C = 8702.837189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 C 0.280 3.720 4 H -0.012 1.012 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.578 6.578 16 C -0.049 4.049 17 C 0.035 3.965 18 C -0.036 4.036 19 N -0.412 5.412 20 C 0.035 3.965 21 C -0.203 4.203 22 S 0.159 5.841 23 C 0.098 3.902 24 N -0.486 5.486 25 H 0.016 0.984 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.227 0.773 35 H 0.224 0.776 36 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 7.530 17.264 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C 0.176 3.824 4 H 0.006 0.994 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.188 4.188 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.458 6.458 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.169 4.169 19 N -0.092 5.092 20 C -0.091 4.091 21 C -0.339 4.339 22 S 0.407 5.593 23 C -0.268 4.268 24 N -0.210 5.210 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.243 0.757 35 H 0.241 0.759 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -17.059 8.563 14.757 24.127 hybrid contribution 1.038 -1.248 1.061 1.939 sum -16.021 7.315 15.817 23.672 Atomic orbital electron populations 1.21643 0.97230 0.98814 0.99996 1.21753 0.93455 0.99225 1.01276 1.18274 0.93465 0.89055 0.81589 0.99416 1.21620 0.91510 1.38621 1.06672 0.90891 1.25821 1.03434 0.94491 0.95034 1.70075 1.37067 1.38584 1.09885 0.85353 0.79033 0.78932 0.77049 1.19440 1.21471 1.18882 1.46204 1.15660 1.56630 1.17441 1.21038 0.81756 0.78537 0.90330 1.90692 1.52593 1.60068 1.42416 1.20079 0.91069 1.01640 0.96140 1.20416 0.96866 0.99027 0.93279 1.23025 0.83499 1.04667 1.05673 1.44188 1.09636 1.33855 1.21492 1.21108 0.80499 1.02906 1.04622 1.25638 1.06412 1.03919 0.97941 1.84787 0.94162 1.48897 1.31422 1.26690 0.98220 1.06315 0.95598 1.70397 1.06935 1.18171 1.25486 0.96495 0.93558 0.93669 0.93628 0.91335 0.92733 0.76037 0.83284 0.86223 0.75679 0.75920 0.74344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.93 2.24 44.24 0.10 15.03 16 4 H -0.01 -0.78 7.58 -2.39 -0.02 -0.80 16 5 C -0.55 -29.70 8.73 25.60 0.22 -29.48 16 6 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 7 C 0.01 0.66 5.29 84.65 0.45 1.10 16 8 N -0.92 -54.30 11.30 21.45 0.24 -54.05 16 9 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 13 N -0.71 -29.95 5.02 -446.11 -2.24 -32.19 16 14 C 0.50 20.58 6.39 87.66 0.56 21.14 16 15 O -0.58 -30.11 12.70 -3.02 -0.04 -30.15 16 16 C -0.05 -1.38 6.26 29.10 0.18 -1.20 16 17 C 0.04 1.13 5.84 41.36 0.24 1.38 16 18 C -0.04 -0.86 11.91 82.68 0.98 0.12 16 19 N -0.41 -9.96 3.19 -355.68 -1.13 -11.09 16 20 C 0.04 0.49 11.26 83.86 0.94 1.43 16 21 C -0.20 -2.37 11.11 67.88 0.75 -1.62 16 22 S 0.16 3.52 23.37 -56.49 -1.32 2.20 16 23 C 0.10 3.12 8.92 179.68 1.60 4.73 16 24 N -0.49 -19.24 10.69 -184.83 -1.98 -21.22 16 25 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 26 H 0.05 2.10 5.64 -2.39 -0.01 2.08 16 27 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 30 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.40 13.97 8.54 -92.71 -0.79 13.18 16 32 H 0.15 2.73 8.10 -2.39 -0.02 2.71 16 33 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.24 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -84.96 317.35 2.71 -82.25 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.32 Total: 17.36 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 6.82 Total: 1.73 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -5.11 Total: -118.55 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.04 Total: -30.15 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.32 Total: 2.20 kcal Total: -84.96 2.71 -82.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.467 kcal (2) G-P(sol) polarization free energy of solvation -84.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds