Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 119.83570 * 2 1 4 4 C 1.37873 * 120.18696 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.85252 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.16406 * 180.02562 * 5 4 3 7 7 C 1.34814 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.46425 * 119.99655 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00407 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99726 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00025 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47009 * 325.00356 * 11 10 8 13 13 C 1.53005 * 109.46954 * 84.99861 * 11 10 8 14 14 C 1.50697 * 109.47345 * 204.99910 * 11 10 8 15 15 H 1.08000 * 119.99665 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00410 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99760 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00299 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47188 * 89.99943 * 18 16 14 20 20 H 1.48504 * 109.46928 * 209.99795 * 18 16 14 21 21 H 1.48501 * 109.46904 * 329.99750 * 18 16 14 22 22 C 1.39803 * 119.67511 * 359.97438 * 5 4 3 23 23 C 1.38029 * 119.81123 * 0.27883 * 22 5 4 24 24 Cl 1.73594 * 119.92943 * 179.72374 * 23 22 5 25 25 H 1.08997 * 109.47032 * 90.00303 * 1 2 3 26 26 H 1.09003 * 109.47157 * 209.99803 * 1 2 3 27 27 H 1.08995 * 109.47328 * 330.00118 * 1 2 3 28 28 H 1.08007 * 119.90483 * 0.02562 * 3 2 1 29 29 H 1.08006 * 120.07179 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00211 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00073 * 359.97438 * 7 6 5 32 32 H 0.96997 * 120.00078 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46858 * 60.00402 * 13 11 10 34 34 H 1.08998 * 109.46919 * 179.97438 * 13 11 10 35 35 H 1.08992 * 109.47413 * 300.00041 * 13 11 10 36 36 H 0.96996 * 119.99955 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.09161 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2005 0.0000 4 6 3.5743 1.2090 -0.0005 5 6 4.2778 0.0003 -0.0005 6 6 5.7499 0.0014 -0.0005 7 6 6.4232 1.1694 -0.0011 8 6 7.8874 1.1704 -0.0005 9 8 8.4967 0.1170 0.0000 10 7 8.5604 2.3381 -0.0015 11 6 10.0254 2.3391 -0.0004 12 1 10.3889 1.4983 0.5904 13 6 10.5366 2.2118 -1.4369 14 6 10.5264 3.6280 0.5987 15 1 9.8238 4.3717 0.9444 16 6 11.8817 3.8577 0.7054 17 7 12.7373 2.9518 0.2849 18 14 12.5026 5.4550 1.4487 19 1 12.6673 5.2876 2.9150 20 1 13.8107 5.8082 0.8408 21 1 11.5235 6.5390 1.1811 22 6 3.5763 -1.2089 0.0006 23 6 2.1960 -1.2015 -0.0042 24 17 1.3218 -2.7012 -0.0101 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6513 2.1335 0.0004 29 1 4.1097 2.1470 -0.0009 30 1 6.2906 -0.9336 -0.0001 31 1 5.8825 2.1043 -0.0019 32 1 8.0749 3.1777 -0.0023 33 1 10.1731 3.0527 -2.0277 34 1 11.6266 2.2131 -1.4361 35 1 10.1743 1.2797 -1.8702 36 1 13.6908 3.1135 0.3596 37 1 4.1128 -2.1462 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194663155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -18.355127 kcal Electronic energy + Delta-G solvation = -19582.402724 eV Core-core repulsion = 16350.182322 eV Total energy + Delta-G solvation = -3232.220402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84152 -38.81513 -36.80017 -35.05088 -34.39865 -32.39772 -31.60469 -30.92770 -29.02213 -26.96952 -25.26604 -23.49088 -23.10248 -21.47020 -20.00044 -19.16106 -17.49483 -16.74852 -16.01851 -15.55910 -15.53629 -15.11120 -14.50860 -14.30602 -14.10477 -13.99274 -13.52572 -13.14066 -12.83736 -12.69301 -12.41802 -12.11684 -11.99251 -11.91604 -11.69331 -11.30322 -11.09291 -11.02329 -10.99620 -10.76747 -10.32921 -10.24403 -10.11844 -9.16160 -9.11475 -9.05850 -8.56113 -8.32674 -7.88325 -6.13199 -4.22656 0.39805 0.93084 1.83916 1.95442 3.23983 3.30531 3.32280 3.40403 3.99436 4.03714 4.33811 4.41067 4.47265 4.71895 4.79453 4.95328 5.09567 5.19166 5.25026 5.29051 5.35649 5.50341 5.60538 5.75076 5.86196 5.93885 6.07983 6.39566 6.49680 6.53387 6.82822 6.96379 7.14349 7.44189 7.55672 7.69019 7.90813 8.14067 8.64919 8.76776 9.10398 9.44904 10.92867 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036386 B = 0.002472 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.352421 B =11325.468415 C =11848.508284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.109 4.109 4 C -0.099 4.099 5 C -0.050 4.050 6 C -0.055 4.055 7 C -0.177 4.177 8 C 0.527 3.473 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.263 3.737 12 H 0.049 0.951 13 C -0.147 4.147 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.090 4.090 23 C -0.038 4.038 24 Cl -0.070 7.070 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.001 -4.350 -1.278 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.051 4.051 6 C -0.075 4.075 7 C -0.198 4.198 8 C 0.314 3.686 9 O -0.438 6.438 10 N -0.347 5.347 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.109 4.109 23 C -0.064 4.064 24 Cl -0.041 7.041 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.222 0.778 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.384 -5.235 -1.296 23.997 hybrid contribution 0.136 1.189 0.365 1.251 sum -23.248 -4.046 -0.931 23.615 Atomic orbital electron populations 1.20887 0.90308 1.03498 1.02936 1.19880 0.96769 0.91423 0.99675 1.20936 0.93980 0.97130 1.00620 1.21566 0.94118 0.98065 0.97988 1.18998 0.93182 0.92527 1.00364 1.22203 0.90685 0.99509 0.95087 1.23294 0.94855 0.98700 1.02926 1.18257 0.87252 0.84938 0.78164 1.90769 1.70214 1.31364 1.51501 1.46473 1.10318 1.06674 1.71255 1.18773 0.72928 0.98132 0.94071 0.93273 1.22075 1.04451 0.96733 0.97296 1.21214 0.92110 1.02426 1.41515 0.92055 1.24897 0.96609 0.97090 0.95159 1.69905 1.02359 1.33984 1.45825 0.86437 0.78261 0.83046 0.79277 1.20548 1.21055 1.19851 1.21253 0.91781 0.98720 0.99103 1.20675 0.92180 0.86797 1.06775 1.98358 1.76452 1.32326 1.96945 0.90616 0.90818 0.91019 0.84839 0.84650 0.84452 0.85748 0.77800 0.95446 0.89101 0.96590 0.92550 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.60 36.01 0.35 -0.44 16 2 C -0.08 -0.68 5.89 -104.47 -0.62 -1.30 16 3 C -0.11 -0.92 9.67 -39.66 -0.38 -1.30 16 4 C -0.10 -0.97 9.41 -39.11 -0.37 -1.33 16 5 C -0.05 -0.57 5.87 -105.06 -0.62 -1.19 16 6 C -0.05 -0.74 9.46 -37.15 -0.35 -1.09 16 7 C -0.18 -2.58 9.41 -37.50 -0.35 -2.93 16 8 C 0.53 10.58 7.71 -12.96 -0.10 10.48 16 9 O -0.56 -13.44 15.89 5.20 0.08 -13.35 16 10 N -0.70 -14.61 5.07 -56.32 -0.29 -14.89 16 11 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 12 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 14 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.92 11.32 55.43 0.63 -24.29 16 18 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.09 -0.96 9.57 -39.07 -0.37 -1.33 16 23 C -0.04 -0.38 6.31 -39.56 -0.25 -0.63 16 24 Cl -0.07 -0.64 27.27 -51.86 -1.41 -2.06 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.49 6.89 -51.93 -0.36 0.13 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.14 1.11 6.17 -52.48 -0.32 0.79 16 30 H 0.14 1.97 7.52 -52.49 -0.39 1.57 16 31 H 0.12 1.40 6.07 -52.49 -0.32 1.08 16 32 H 0.39 6.89 8.52 -40.82 -0.35 6.54 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -30.93 332.64 -8.82 -39.75 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.53 Total: 4.91 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.29 Total: -10.63 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.34 Total: -39.18 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.41 Total: -2.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.93 -8.82 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194663155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.394 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds