Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 119.83570 * 2 1 4 4 C 1.37873 * 120.18696 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.85252 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.16406 * 180.02562 * 5 4 3 7 7 C 1.34814 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.46425 * 119.99655 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00407 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99726 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00025 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47009 * 325.00356 * 11 10 8 13 13 C 1.53005 * 109.46954 * 84.99861 * 11 10 8 14 14 C 1.50697 * 109.47345 * 204.99910 * 11 10 8 15 15 H 1.08000 * 119.99665 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00410 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99760 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00299 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47188 * 89.99943 * 18 16 14 20 20 H 1.48504 * 109.46928 * 209.99795 * 18 16 14 21 21 H 1.48501 * 109.46904 * 329.99750 * 18 16 14 22 22 C 1.39803 * 119.67511 * 359.97438 * 5 4 3 23 23 C 1.38029 * 119.81123 * 0.27883 * 22 5 4 24 24 Cl 1.73594 * 119.92943 * 179.72374 * 23 22 5 25 25 H 1.08997 * 109.47032 * 90.00303 * 1 2 3 26 26 H 1.09003 * 109.47157 * 209.99803 * 1 2 3 27 27 H 1.08995 * 109.47328 * 330.00118 * 1 2 3 28 28 H 1.08007 * 119.90483 * 0.02562 * 3 2 1 29 29 H 1.08006 * 120.07179 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00211 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00073 * 359.97438 * 7 6 5 32 32 H 0.96997 * 120.00078 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46858 * 60.00402 * 13 11 10 34 34 H 1.08998 * 109.46919 * 179.97438 * 13 11 10 35 35 H 1.08992 * 109.47413 * 300.00041 * 13 11 10 36 36 H 0.96996 * 119.99955 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.09161 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2005 0.0000 4 6 3.5743 1.2090 -0.0005 5 6 4.2778 0.0003 -0.0005 6 6 5.7499 0.0014 -0.0005 7 6 6.4232 1.1694 -0.0011 8 6 7.8874 1.1704 -0.0005 9 8 8.4967 0.1170 0.0000 10 7 8.5604 2.3381 -0.0015 11 6 10.0254 2.3391 -0.0004 12 1 10.3889 1.4983 0.5904 13 6 10.5366 2.2118 -1.4369 14 6 10.5264 3.6280 0.5987 15 1 9.8238 4.3717 0.9444 16 6 11.8817 3.8577 0.7054 17 7 12.7373 2.9518 0.2849 18 14 12.5026 5.4550 1.4487 19 1 12.6673 5.2876 2.9150 20 1 13.8107 5.8082 0.8408 21 1 11.5235 6.5390 1.1811 22 6 3.5763 -1.2089 0.0006 23 6 2.1960 -1.2015 -0.0042 24 17 1.3218 -2.7012 -0.0101 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6513 2.1335 0.0004 29 1 4.1097 2.1470 -0.0009 30 1 6.2906 -0.9336 -0.0001 31 1 5.8825 2.1043 -0.0019 32 1 8.0749 3.1777 -0.0023 33 1 10.1731 3.0527 -2.0277 34 1 11.6266 2.2131 -1.4361 35 1 10.1743 1.2797 -1.8702 36 1 13.6908 3.1135 0.3596 37 1 4.1128 -2.1462 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194663155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -36.122534 kcal Electronic energy + Delta-G solvation = -19583.173176 eV Core-core repulsion = 16350.182322 eV Total energy + Delta-G solvation = -3232.990854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78357 -40.27463 -37.55488 -36.79866 -35.46658 -34.31855 -32.56191 -31.71340 -30.80275 -27.86679 -27.33674 -24.64303 -23.91650 -22.75141 -21.54831 -20.57784 -18.92881 -18.04852 -17.32357 -16.93238 -16.67721 -16.28326 -15.90258 -15.67586 -15.12944 -15.08483 -14.69152 -14.43595 -14.23688 -13.73356 -13.48852 -13.42846 -12.99780 -12.92736 -12.90687 -12.78563 -12.71096 -12.63288 -12.26905 -12.13559 -12.06247 -11.75624 -11.12752 -11.06422 -10.85431 -10.59188 -9.86522 -9.78487 -9.14248 -8.17546 -6.35379 -0.52323 0.19554 0.93321 1.10865 1.45747 1.46413 1.57270 2.34405 2.37935 2.65547 2.76464 3.13050 3.60332 3.72038 3.87135 4.07601 4.10477 4.27525 4.28752 4.59757 4.70025 4.74632 4.79605 4.83190 4.91742 4.98789 5.08497 5.13097 5.24019 5.31682 5.40406 5.46018 5.55725 5.60928 5.69534 5.78258 5.91896 6.09268 6.72487 6.96858 7.32145 7.54898 8.89048 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036386 B = 0.002472 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.352421 B =11325.468415 C =11848.508284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C -0.108 4.108 4 C -0.094 4.094 5 C -0.074 4.074 6 C -0.028 4.028 7 C -0.193 4.193 8 C 0.523 3.477 9 O -0.609 6.609 10 N -0.697 5.697 11 C 0.268 3.732 12 H -0.003 1.003 13 C -0.134 4.134 14 C -0.547 4.547 15 H 0.076 0.924 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.975 3.025 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.258 1.258 22 C -0.096 4.096 23 C -0.053 4.053 24 Cl -0.067 7.067 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.165 0.835 32 H 0.408 0.592 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.011 0.989 36 H 0.265 0.735 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.902 -2.130 -1.060 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.072 4.072 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.074 4.074 6 C -0.048 4.048 7 C -0.213 4.213 8 C 0.313 3.687 9 O -0.494 6.494 10 N -0.345 5.345 11 C 0.165 3.835 12 H 0.015 0.985 13 C -0.193 4.193 14 C -0.585 4.585 15 H 0.094 0.906 16 C -0.188 4.188 17 N -0.557 5.557 18 Si 0.799 3.201 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.182 1.182 22 C -0.115 4.115 23 C -0.080 4.080 24 Cl -0.038 7.038 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.137 0.863 31 H 0.182 0.818 32 H 0.243 0.757 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.334 -2.993 -1.081 26.526 hybrid contribution 0.876 0.351 0.293 0.988 sum -25.458 -2.642 -0.788 25.607 Atomic orbital electron populations 1.20971 0.88536 1.04390 1.03806 1.20287 0.98169 0.91130 0.97627 1.21301 0.93576 0.98193 0.99475 1.21833 0.94876 0.97932 0.96581 1.18872 0.91670 0.93722 1.03141 1.22251 0.92152 0.98477 0.91962 1.23023 0.91118 1.00839 1.06345 1.19081 0.89523 0.83668 0.76394 1.90738 1.71882 1.33027 1.53762 1.46186 1.08543 1.08078 1.71690 1.18370 0.75731 0.96144 0.93303 0.98510 1.21900 1.02860 0.97064 0.97445 1.21551 0.92708 1.02711 1.41495 0.90619 1.25845 0.96879 1.00579 0.95480 1.70062 1.02638 1.36089 1.46934 0.85306 0.77757 0.78955 0.78081 1.20400 1.20987 1.18165 1.21345 0.92425 0.98743 0.98969 1.20812 0.92043 0.87581 1.07554 1.98358 1.76219 1.32264 1.96969 0.89608 0.91067 0.89065 0.81710 0.82834 0.86275 0.81783 0.75680 0.93886 0.91450 0.97023 0.92541 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.60 71.24 0.68 -0.50 16 2 C -0.07 -1.06 5.89 -19.76 -0.12 -1.17 16 3 C -0.11 -1.41 9.67 22.22 0.21 -1.19 16 4 C -0.09 -1.53 9.41 22.57 0.21 -1.32 16 5 C -0.07 -1.56 5.87 -20.15 -0.12 -1.68 16 6 C -0.03 -0.75 9.46 23.84 0.23 -0.52 16 7 C -0.19 -5.44 9.41 23.62 0.22 -5.22 16 8 C 0.52 21.42 7.71 86.37 0.67 22.09 16 9 O -0.61 -30.90 15.89 -4.32 -0.07 -30.97 16 10 N -0.70 -29.25 5.07 -450.33 -2.28 -31.53 16 11 C 0.27 14.13 2.56 44.25 0.11 14.24 16 12 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 13 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 14 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 15 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -53.13 11.32 21.45 0.24 -52.88 16 18 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C -0.10 -1.96 9.57 22.60 0.22 -1.75 16 23 C -0.05 -0.98 6.31 22.28 0.14 -0.84 16 24 Cl -0.07 -1.15 27.27 -2.72 -0.07 -1.22 16 25 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.76 6.89 -2.39 -0.02 0.74 16 27 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 28 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 29 H 0.15 1.88 6.17 -2.91 -0.02 1.86 16 30 H 0.12 3.56 7.52 -2.91 -0.02 3.54 16 31 H 0.16 3.20 6.07 -2.91 -0.02 3.19 16 32 H 0.41 13.93 8.52 -92.71 -0.79 13.14 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -69.58 332.64 3.95 -65.63 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.31 Total: 18.85 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.80 Total: -11.76 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.04 Total: -84.41 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.07 Total: -30.97 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -69.58 3.95 -65.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194663155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.504 kcal (2) G-P(sol) polarization free energy of solvation -69.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds