Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47397 * 2 1 4 4 C 1.53000 * 109.46961 * 120.00312 * 2 1 3 5 5 C 1.50693 * 109.47420 * 65.00083 * 4 2 1 6 6 N 1.28650 * 124.71404 * 89.99826 * 5 4 2 7 7 C 1.33578 * 115.77219 * 179.97438 * 6 5 4 8 8 C 1.47173 * 123.15305 * 179.97438 * 7 6 5 9 9 O 1.21660 * 120.00094 * 174.84691 * 8 7 6 10 10 N 1.34781 * 119.99662 * 354.85184 * 8 7 6 11 11 C 1.36953 * 119.99282 * 174.40908 * 10 8 7 12 12 H 1.08002 * 120.00305 * 18.26316 * 11 10 8 13 13 C 1.38985 * 119.99613 * 198.53019 * 11 10 8 14 14 N 1.31411 * 119.99896 * 26.33373 * 13 11 10 15 15 Si 1.86799 * 119.99837 * 206.32963 * 13 11 10 16 16 H 1.48492 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46833 * 120.00425 * 15 13 11 18 18 H 1.48499 * 109.47048 * 240.00095 * 15 13 11 19 19 C 1.46491 * 120.00503 * 354.40753 * 10 8 7 20 20 C 1.47203 * 109.47030 * 85.95357 * 19 10 8 21 21 N 5.31420 * 139.94393 * 159.61195 * 2 1 3 22 22 C 1.35294 * 113.69111 * 0.23325 * 7 6 5 23 23 S 1.70767 * 124.71197 * 269.97649 * 5 4 2 24 24 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47053 * 300.00025 * 1 2 3 26 26 H 1.09000 * 109.47003 * 60.00259 * 1 2 3 27 27 H 1.09000 * 109.47053 * 239.99975 * 2 1 3 28 28 H 1.08992 * 109.47626 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46891 * 300.00399 * 3 2 1 30 30 H 1.09009 * 109.46944 * 59.99695 * 3 2 1 31 31 H 1.08993 * 109.46957 * 304.99452 * 4 2 1 32 32 H 1.09000 * 109.46912 * 185.00115 * 4 2 1 33 33 H 0.96999 * 119.99679 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47441 * 205.95592 * 19 10 8 35 35 H 1.09000 * 109.47015 * 325.96147 * 19 10 8 36 36 H 1.08005 * 125.58810 * 179.76204 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 7 2.3511 -3.1065 0.6593 7 6 1.8249 -4.3334 0.7051 8 6 2.4969 -5.5187 0.1487 9 8 2.0103 -6.6228 0.3041 10 7 3.6514 -5.3808 -0.5330 11 6 4.3360 -6.4906 -0.9516 12 1 3.8344 -7.4455 -1.0070 13 6 5.6776 -6.3891 -1.3000 14 7 6.4230 -5.4428 -0.7748 15 14 6.4213 -7.5980 -2.5144 16 1 5.3795 -8.5591 -2.9571 17 1 6.9443 -6.8587 -3.6914 18 1 7.5313 -8.3368 -1.8607 19 6 4.1740 -4.0440 -0.8260 20 6 4.9774 -3.5707 0.3130 21 7 5.5976 -3.2056 1.1914 22 6 0.6138 -4.3834 1.3061 23 16 0.1849 -2.8087 1.8142 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 7.3594 -5.3722 -1.0177 34 1 4.7981 -4.0855 -1.7186 35 1 3.3437 -3.3583 -0.9948 36 1 0.0167 -5.2728 1.4437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195452310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = 42.751648 kcal Electronic energy + Delta-G solvation = -21395.502417 eV Core-core repulsion = 18200.268261 eV Total energy + Delta-G solvation = -3195.234155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04462 -38.01508 -36.33915 -35.62601 -34.13481 -31.90418 -30.76313 -27.62694 -27.29534 -27.28145 -25.84550 -23.67659 -21.31992 -19.79238 -19.16983 -18.02529 -17.84163 -16.25827 -15.54735 -15.48282 -15.04481 -14.92724 -14.52455 -14.08623 -13.75714 -13.33297 -13.09756 -12.88447 -12.79721 -12.54614 -12.31437 -11.97653 -11.86101 -11.59541 -11.43346 -11.20163 -11.16479 -11.11210 -10.97723 -10.77141 -10.46367 -10.39405 -10.29599 -9.36220 -9.24377 -9.14956 -8.76543 -8.43806 -8.04276 -6.58598 -3.99238 0.91620 1.57164 1.97304 2.54784 3.12143 3.20514 3.27835 3.83690 4.10729 4.14864 4.25281 4.40394 4.76423 4.79472 4.86456 4.91243 5.07988 5.30511 5.48624 5.52891 5.56310 5.58714 5.69427 5.71727 5.77475 5.82056 5.91378 6.03650 6.17047 6.19814 6.28059 6.49567 6.60915 7.41010 7.78985 7.94839 8.26919 8.94210 9.07680 9.15266 9.72852 10.45660 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.005368 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.291976 B = 5214.428207 C = 6038.119621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.038 4.038 5 C 0.031 3.969 6 N -0.438 5.438 7 C 0.042 3.958 8 C 0.508 3.492 9 O -0.575 6.575 10 N -0.413 5.413 11 C -0.317 4.317 12 H 0.113 0.887 13 C 0.036 3.964 14 N -0.852 5.852 15 Si 0.925 3.075 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.281 1.281 19 C 0.225 3.775 20 C 0.273 3.727 21 N -0.487 5.487 22 C -0.246 4.246 23 S 0.160 5.840 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.275 0.725 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 12.725 -0.471 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.079 4.079 5 C -0.249 4.249 6 N -0.154 5.154 7 C -0.091 4.091 8 C 0.295 3.705 9 O -0.459 6.459 10 N -0.130 5.130 11 C -0.444 4.444 12 H 0.131 0.869 13 C -0.171 4.171 14 N -0.488 5.488 15 Si 0.751 3.249 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.207 1.207 19 C 0.097 3.903 20 C -0.045 4.045 21 N -0.167 5.167 22 C -0.388 4.388 23 S 0.417 5.583 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.193 13.288 1.145 16.786 hybrid contribution 0.899 -1.576 -1.111 2.128 sum -9.293 11.712 0.034 14.951 Atomic orbital electron populations 1.22001 0.95122 1.02282 1.01871 1.21101 0.96000 0.96131 0.97911 1.21813 1.01377 0.95281 1.01776 1.20344 1.03051 0.85491 0.98971 1.27116 0.95451 1.00694 1.01626 1.67339 1.31383 0.99062 1.17664 1.20931 0.93292 0.92123 1.02776 1.16862 0.84469 0.86068 0.83082 1.90648 1.66961 1.25413 1.62922 1.43538 1.18576 1.05420 1.45444 1.19825 0.92744 0.90095 1.41773 0.86926 1.25386 0.95585 0.98329 0.97752 1.69976 1.07504 1.34088 1.37208 0.85892 0.78911 0.80122 0.80009 1.18797 1.20235 1.20716 1.18908 0.95415 0.84261 0.91677 1.28699 0.91040 0.91009 0.93750 1.80775 1.12243 1.11912 1.11812 1.26343 1.01524 1.03088 1.07830 1.82474 1.22244 0.98616 1.55011 0.92275 0.92547 0.92401 0.90226 0.92303 0.92431 0.92666 0.89922 0.88701 0.91395 0.87602 0.87577 0.80068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.89 37.16 0.33 -1.03 16 2 C -0.09 -0.90 2.91 -90.62 -0.26 -1.16 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.04 -0.44 5.26 -27.89 -0.15 -0.58 16 5 C 0.03 0.45 5.97 -13.61 -0.08 0.37 16 6 N -0.44 -8.11 5.69 -8.52 -0.05 -8.16 16 7 C 0.04 0.87 6.41 -84.53 -0.54 0.33 16 8 C 0.51 12.63 7.55 -12.63 -0.10 12.54 16 9 O -0.58 -15.79 16.37 5.22 0.09 -15.70 16 10 N -0.41 -10.36 2.59 -119.25 -0.31 -10.67 16 11 C -0.32 -8.42 9.28 -14.99 -0.14 -8.55 16 12 H 0.11 3.12 7.40 -52.49 -0.39 2.73 16 13 C 0.04 0.91 4.72 -17.45 -0.08 0.83 16 14 N -0.85 -22.12 9.74 55.50 0.54 -21.58 16 15 Si 0.93 19.54 29.63 -169.99 -5.04 14.51 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.22 4.96 4.76 -6.83 -0.03 4.92 16 20 C 0.27 6.54 11.69 -20.77 -0.24 6.29 16 21 N -0.49 -12.33 18.53 42.14 0.78 -11.55 16 22 C -0.25 -4.22 10.62 29.68 0.32 -3.90 16 23 S 0.16 2.06 21.37 -107.50 -2.30 -0.23 16 24 H 0.06 0.58 6.13 -51.93 -0.32 0.26 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.11 2.31 6.79 -51.93 -0.35 1.96 16 35 H 0.11 2.07 5.71 -51.93 -0.30 1.77 16 36 H 0.18 2.97 8.04 -52.48 -0.42 2.55 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -31.56 319.99 -6.39 -37.95 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.29 Total: 1.42 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.64 Total: 9.20 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.96 Total: -51.96 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.04 Total: 14.51 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.30 Total: -0.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.56 -6.39 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.705 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds