Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47397 * 2 1 4 4 C 1.53000 * 109.46961 * 120.00312 * 2 1 3 5 5 C 1.50693 * 109.47420 * 65.00083 * 4 2 1 6 6 N 1.28650 * 124.71404 * 89.99826 * 5 4 2 7 7 C 1.33578 * 115.77219 * 179.97438 * 6 5 4 8 8 C 1.47173 * 123.15305 * 179.97438 * 7 6 5 9 9 O 1.21660 * 120.00094 * 174.84691 * 8 7 6 10 10 N 1.34781 * 119.99662 * 354.85184 * 8 7 6 11 11 C 1.36953 * 119.99282 * 174.40908 * 10 8 7 12 12 H 1.08002 * 120.00305 * 18.26316 * 11 10 8 13 13 C 1.38985 * 119.99613 * 198.53019 * 11 10 8 14 14 N 1.31411 * 119.99896 * 26.33373 * 13 11 10 15 15 Si 1.86799 * 119.99837 * 206.32963 * 13 11 10 16 16 H 1.48492 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46833 * 120.00425 * 15 13 11 18 18 H 1.48499 * 109.47048 * 240.00095 * 15 13 11 19 19 C 1.46491 * 120.00503 * 354.40753 * 10 8 7 20 20 C 1.47203 * 109.47030 * 85.95357 * 19 10 8 21 21 N 5.31420 * 139.94393 * 159.61195 * 2 1 3 22 22 C 1.35294 * 113.69111 * 0.23325 * 7 6 5 23 23 S 1.70767 * 124.71197 * 269.97649 * 5 4 2 24 24 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47053 * 300.00025 * 1 2 3 26 26 H 1.09000 * 109.47003 * 60.00259 * 1 2 3 27 27 H 1.09000 * 109.47053 * 239.99975 * 2 1 3 28 28 H 1.08992 * 109.47626 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46891 * 300.00399 * 3 2 1 30 30 H 1.09009 * 109.46944 * 59.99695 * 3 2 1 31 31 H 1.08993 * 109.46957 * 304.99452 * 4 2 1 32 32 H 1.09000 * 109.46912 * 185.00115 * 4 2 1 33 33 H 0.96999 * 119.99679 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47441 * 205.95592 * 19 10 8 35 35 H 1.09000 * 109.47015 * 325.96147 * 19 10 8 36 36 H 1.08005 * 125.58810 * 179.76204 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 7 2.3511 -3.1065 0.6593 7 6 1.8249 -4.3334 0.7051 8 6 2.4969 -5.5187 0.1487 9 8 2.0103 -6.6228 0.3041 10 7 3.6514 -5.3808 -0.5330 11 6 4.3360 -6.4906 -0.9516 12 1 3.8344 -7.4455 -1.0070 13 6 5.6776 -6.3891 -1.3000 14 7 6.4230 -5.4428 -0.7748 15 14 6.4213 -7.5980 -2.5144 16 1 5.3795 -8.5591 -2.9571 17 1 6.9443 -6.8587 -3.6914 18 1 7.5313 -8.3368 -1.8607 19 6 4.1740 -4.0440 -0.8260 20 6 4.9774 -3.5707 0.3130 21 7 5.5976 -3.2056 1.1914 22 6 0.6138 -4.3834 1.3061 23 16 0.1849 -2.8087 1.8142 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2951 33 1 7.3594 -5.3722 -1.0177 34 1 4.7981 -4.0855 -1.7186 35 1 3.3437 -3.3583 -0.9948 36 1 0.0167 -5.2728 1.4437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195452310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = 23.839727 kcal Electronic energy + Delta-G solvation = -21396.322499 eV Core-core repulsion = 18200.268261 eV Total energy + Delta-G solvation = -3196.054238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56062 -39.64972 -37.61720 -37.18306 -36.08164 -33.84067 -31.97763 -29.29982 -28.58095 -27.94540 -27.60769 -25.22819 -22.57147 -20.91913 -20.49022 -19.77040 -19.53918 -18.09119 -17.15989 -16.98112 -16.34874 -16.07008 -15.84019 -15.70137 -15.20684 -14.83131 -14.66315 -14.39270 -14.12602 -13.82279 -13.44963 -13.35825 -13.13698 -12.97271 -12.90394 -12.84051 -12.65825 -12.36980 -12.15463 -12.05195 -11.99690 -11.75788 -11.50709 -11.20687 -10.80153 -10.47786 -10.44457 -9.99938 -9.68480 -8.51169 -6.02091 -0.38954 0.38048 0.68821 1.03416 1.45357 1.46549 1.61099 2.01329 2.31230 2.37761 2.51894 2.93040 2.97846 3.29258 3.76383 3.87035 4.00340 4.06403 4.17825 4.34674 4.48100 4.56700 4.67477 4.73559 4.80975 4.89949 4.96969 5.03567 5.11056 5.15524 5.36477 5.41003 5.50854 5.53349 5.94076 6.27775 6.61758 6.99556 7.16976 7.24029 7.81454 8.52597 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.005368 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.291976 B = 5214.428207 C = 6038.119621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.038 4.038 5 C 0.019 3.981 6 N -0.469 5.469 7 C 0.007 3.993 8 C 0.501 3.499 9 O -0.616 6.616 10 N -0.427 5.427 11 C -0.353 4.353 12 H 0.089 0.911 13 C 0.009 3.991 14 N -0.877 5.877 15 Si 0.993 3.007 16 H -0.266 1.266 17 H -0.259 1.259 18 H -0.283 1.283 19 C 0.233 3.767 20 C 0.285 3.715 21 N -0.516 5.516 22 C -0.255 4.255 23 S 0.285 5.715 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.279 0.721 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 14.925 -0.248 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.079 4.079 5 C -0.260 4.260 6 N -0.186 5.186 7 C -0.127 4.127 8 C 0.290 3.710 9 O -0.503 6.503 10 N -0.144 5.144 11 C -0.480 4.480 12 H 0.107 0.893 13 C -0.196 4.196 14 N -0.513 5.513 15 Si 0.816 3.184 16 H -0.191 1.191 17 H -0.184 1.184 18 H -0.209 1.209 19 C 0.107 3.893 20 C -0.032 4.032 21 N -0.197 5.197 22 C -0.398 4.398 23 S 0.543 5.457 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.660 15.535 1.375 19.473 hybrid contribution 1.163 -2.157 -1.048 2.665 sum -10.497 13.379 0.327 17.008 Atomic orbital electron populations 1.22001 0.93890 1.01895 1.03372 1.21080 0.96969 0.96686 0.96167 1.21785 1.00859 0.94232 1.03006 1.20537 1.02418 0.83777 1.01128 1.27709 0.96417 1.01443 1.00439 1.67218 1.32868 0.98796 1.19738 1.20389 0.94793 0.91858 1.05634 1.17559 0.84224 0.87185 0.82080 1.90587 1.67988 1.27504 1.64183 1.43675 1.18805 1.05988 1.45928 1.19762 0.93649 0.90183 1.44453 0.89344 1.26130 0.95160 0.99998 0.98270 1.70036 1.07777 1.35563 1.37890 0.84902 0.77567 0.77939 0.78010 1.19054 1.18381 1.20918 1.19030 0.95973 0.83531 0.90778 1.29012 0.90395 0.90177 0.93592 1.80748 1.13299 1.12992 1.12643 1.26688 1.00515 1.06327 1.06291 1.82010 1.18733 0.93600 1.51382 0.93431 0.90682 0.91424 0.92101 0.93174 0.91500 0.91143 0.86990 0.90365 0.91113 0.87691 0.85014 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.89 71.98 0.64 -1.50 16 2 C -0.09 -1.53 2.91 -10.79 -0.03 -1.56 16 3 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 4 C -0.04 -0.78 5.26 29.85 0.16 -0.62 16 5 C 0.02 0.51 5.97 88.57 0.53 1.04 16 6 N -0.47 -17.16 5.69 -180.85 -1.03 -18.19 16 7 C 0.01 0.30 6.41 40.55 0.26 0.56 16 8 C 0.50 25.89 7.55 86.59 0.65 26.54 16 9 O -0.62 -35.44 16.37 -4.22 -0.07 -35.50 16 10 N -0.43 -22.29 2.59 -649.41 -1.68 -23.97 16 11 C -0.35 -19.56 9.28 84.07 0.78 -18.78 16 12 H 0.09 5.21 7.40 -2.91 -0.02 5.18 16 13 C 0.01 0.46 4.72 84.93 0.40 0.86 16 14 N -0.88 -46.23 9.74 21.67 0.21 -46.02 16 15 Si 0.99 40.70 29.63 68.60 2.03 42.73 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 C 0.23 10.55 4.76 84.58 0.40 10.95 16 20 C 0.29 13.92 11.69 89.45 1.05 14.97 16 21 N -0.52 -26.48 18.53 20.00 0.37 -26.11 16 22 C -0.26 -8.48 10.62 67.14 0.71 -7.77 16 23 S 0.28 6.36 21.37 -56.49 -1.21 5.16 16 24 H 0.05 0.76 6.13 -2.39 -0.01 0.74 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.11 4.70 6.79 -2.39 -0.02 4.69 16 35 H 0.13 5.22 5.71 -2.39 -0.01 5.21 16 36 H 0.18 5.89 8.04 -2.91 -0.02 5.87 16 Total: -1.00 -71.28 319.99 5.95 -65.34 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.11 Total: 13.16 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 6.21 Total: 23.41 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -2.13 Total: -114.29 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.07 Total: -35.50 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.21 Total: 5.16 kcal Total: -71.28 5.95 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.176 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds