Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47149 * 2 1 4 4 C 1.50700 * 109.46969 * 179.97438 * 3 2 1 5 5 N 1.29375 * 124.69984 * 90.02730 * 4 3 2 6 6 C 1.30938 * 117.46745 * 179.97438 * 5 4 3 7 7 C 1.50700 * 123.04420 * 179.97438 * 6 5 4 8 8 C 1.36790 * 113.92196 * 359.97438 * 6 5 4 9 9 C 1.46558 * 126.18008 * 180.02562 * 8 6 5 10 10 O 1.21729 * 119.99967 * 344.12087 * 9 8 6 11 11 N 1.34775 * 119.99754 * 164.11233 * 9 8 6 12 12 C 1.36893 * 119.99798 * 184.12448 * 11 9 8 13 13 H 1.07994 * 120.00164 * 21.71778 * 12 11 9 14 14 C 1.39008 * 119.99749 * 201.72106 * 12 11 9 15 15 N 1.31406 * 120.00358 * 22.95014 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 202.95206 * 14 12 11 17 17 H 1.48499 * 109.47001 * 59.99357 * 16 14 12 18 18 H 1.48492 * 109.47276 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46584 * 299.99999 * 16 14 12 20 20 C 1.46500 * 120.00196 * 4.12922 * 11 9 8 21 21 C 1.47206 * 109.47217 * 82.95533 * 20 11 9 22 22 N 5.74915 * 135.23742 * 93.46460 * 2 1 3 23 23 S 1.70917 * 124.70246 * 269.71969 * 4 3 2 24 24 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47142 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47163 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.47310 * 119.99898 * 2 1 3 28 28 H 1.09004 * 109.47473 * 239.99674 * 2 1 3 29 29 H 1.08997 * 109.46822 * 299.99883 * 3 2 1 30 30 H 1.09002 * 109.46959 * 59.99993 * 3 2 1 31 31 H 1.08999 * 109.47299 * 90.02179 * 7 6 5 32 32 H 1.08999 * 109.47173 * 210.02910 * 7 6 5 33 33 H 1.09008 * 109.46967 * 330.02463 * 7 6 5 34 34 H 0.96993 * 120.00065 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47248 * 202.95689 * 20 11 9 36 36 H 1.09003 * 109.46911 * 322.95356 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2840 1.4428 -1.0627 6 6 5.5829 1.4433 -0.8973 7 6 6.5576 1.4431 -2.0466 8 6 5.9752 1.4438 0.4131 9 6 7.3566 1.4449 0.9027 10 8 8.2692 1.1570 0.1504 11 7 7.6164 1.7650 2.1859 12 6 8.9115 1.8484 2.6216 13 1 9.7104 2.0091 1.9130 14 6 9.1981 1.7263 3.9763 15 7 8.3585 1.1029 4.7721 16 14 10.7769 2.4484 4.6658 17 1 10.7974 3.9137 4.4253 18 1 10.8452 2.1858 6.1257 19 1 11.9430 1.8203 3.9942 20 6 6.5131 2.0234 3.1143 21 6 6.0038 0.7458 3.6390 22 7 5.6121 -0.2447 4.0410 23 16 4.5195 1.4496 1.4062 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 6.7926 2.4707 -2.3239 32 1 7.4713 0.9292 -1.7481 33 1 6.1138 0.9292 -2.8994 34 1 8.5584 1.0181 5.7174 35 1 6.8697 2.6390 3.9401 36 1 5.7126 2.5462 2.5907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195452477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = 37.055949 kcal Electronic energy + Delta-G solvation = -21136.619282 eV Core-core repulsion = 17941.138142 eV Total energy + Delta-G solvation = -3195.481140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70160 -38.67022 -35.91337 -35.20187 -34.45629 -32.17454 -31.29133 -28.19062 -27.98576 -27.61742 -24.85162 -23.11038 -21.31667 -21.15957 -18.45428 -18.12716 -17.61582 -16.69793 -16.05082 -15.23105 -15.03046 -14.73345 -14.56242 -14.04797 -13.72545 -13.64626 -13.19859 -13.16483 -12.81922 -12.22867 -12.16885 -12.09374 -11.91871 -11.82156 -11.58675 -11.46999 -11.29347 -11.21980 -10.85715 -10.84467 -10.79192 -10.61333 -10.54620 -9.47261 -9.22367 -8.89207 -8.71910 -8.32579 -8.09711 -6.72039 -4.16851 0.72443 1.64519 2.04653 2.90152 3.08737 3.12266 3.14523 3.46490 3.77481 3.96540 3.98576 4.26335 4.60800 4.73327 4.88101 4.93533 4.97673 5.03723 5.42898 5.46653 5.49271 5.59238 5.64337 5.67138 5.82129 5.92228 6.04641 6.08461 6.18062 6.18164 6.27858 6.31979 6.83438 7.27286 7.68847 8.06654 8.11338 8.56360 8.78441 8.94575 9.53027 10.33317 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.005226 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.453801 B = 5356.916807 C = 6312.521840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.473 5.473 6 C 0.112 3.888 7 C -0.084 4.084 8 C -0.259 4.259 9 C 0.519 3.481 10 O -0.556 6.556 11 N -0.423 5.423 12 C -0.310 4.310 13 H 0.114 0.886 14 C 0.035 3.965 15 N -0.860 5.860 16 Si 0.932 3.068 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.208 3.792 21 C 0.236 3.764 22 N -0.446 5.446 23 S 0.162 5.838 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.279 0.721 35 H 0.134 0.866 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 4.532 -4.284 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.080 4.080 4 C -0.267 4.267 5 N -0.188 5.188 6 C -0.025 4.025 7 C -0.143 4.143 8 C -0.383 4.383 9 C 0.308 3.692 10 O -0.440 6.440 11 N -0.141 5.141 12 C -0.437 4.437 13 H 0.132 0.868 14 C -0.171 4.171 15 N -0.497 5.497 16 Si 0.757 3.243 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.194 1.194 20 C 0.079 3.921 21 C -0.084 4.084 22 N -0.126 5.126 23 S 0.421 5.579 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.782 2.889 -3.265 12.563 hybrid contribution 1.388 0.556 -0.165 1.505 sum -10.394 3.445 -3.430 11.475 Atomic orbital electron populations 1.21752 0.95180 1.01875 1.01885 1.21539 0.95934 0.95448 1.02996 1.20240 0.85535 0.98419 1.03770 1.27461 1.01521 1.04072 0.93602 1.65941 1.04620 1.16339 1.31893 1.20724 0.89606 0.98752 0.93466 1.20560 0.97547 1.02934 0.93211 1.26109 0.98109 1.17382 0.96680 1.16551 0.85213 0.83572 0.83833 1.90626 1.44557 1.53136 1.55684 1.43508 1.05985 1.58255 1.06346 1.19752 0.83191 1.48164 0.92619 0.86811 1.25450 0.99925 0.95341 0.96431 1.69862 1.38207 1.34964 1.06649 0.85885 0.80980 0.79782 0.77606 1.19341 1.20758 1.19423 1.18955 0.89123 0.88693 0.95366 1.28948 0.91302 0.95187 0.92929 1.80992 1.12079 1.10246 1.09299 1.84424 0.96772 1.66576 1.10127 0.92511 0.92558 0.92550 0.91620 0.91336 0.89263 0.89940 0.91059 0.87801 0.91674 0.91035 0.84802 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 3 C -0.04 -0.45 5.79 -27.88 -0.16 -0.61 16 4 C 0.01 0.13 6.63 -13.31 -0.09 0.04 16 5 N -0.47 -8.41 10.49 -7.47 -0.08 -8.49 16 6 C 0.11 2.15 6.83 -83.50 -0.57 1.58 16 7 C -0.08 -1.44 9.92 36.01 0.36 -1.08 16 8 C -0.26 -5.29 6.19 -36.75 -0.23 -5.52 16 9 C 0.52 12.32 7.45 -12.91 -0.10 12.22 16 10 O -0.56 -14.45 14.13 5.16 0.07 -14.38 16 11 N -0.42 -9.94 2.59 -119.46 -0.31 -10.25 16 12 C -0.31 -7.73 9.20 -15.01 -0.14 -7.86 16 13 H 0.11 2.94 7.50 -52.49 -0.39 2.54 16 14 C 0.04 0.83 4.78 -17.45 -0.08 0.75 16 15 N -0.86 -21.00 9.79 55.50 0.54 -20.45 16 16 Si 0.93 18.58 29.61 -169.99 -5.03 13.55 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 C 0.21 4.18 4.74 -6.83 -0.03 4.15 16 21 C 0.24 5.16 10.94 -20.68 -0.23 4.93 16 22 N -0.45 -10.37 18.55 42.25 0.78 -9.59 16 23 S 0.16 2.74 16.58 -107.50 -1.78 0.95 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 2.01 5.84 -51.93 -0.30 1.70 16 33 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.13 2.62 6.71 -51.93 -0.35 2.28 16 36 H 0.09 1.53 4.67 -24.91 -0.12 1.41 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -29.45 317.68 -6.17 -35.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.10 Total: 2.02 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -1.06 Total: 6.23 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.94 Total: -48.78 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.07 Total: -14.38 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.78 Total: 0.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.45 -6.17 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.684 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds