Wall clock time and date at job start Tue Mar 31 2020 07:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47149 * 2 1 4 4 C 1.50700 * 109.46969 * 179.97438 * 3 2 1 5 5 N 1.29375 * 124.69984 * 90.02730 * 4 3 2 6 6 C 1.30938 * 117.46745 * 179.97438 * 5 4 3 7 7 C 1.50700 * 123.04420 * 179.97438 * 6 5 4 8 8 C 1.36790 * 113.92196 * 359.97438 * 6 5 4 9 9 C 1.46558 * 126.18008 * 180.02562 * 8 6 5 10 10 O 1.21729 * 119.99967 * 344.12087 * 9 8 6 11 11 N 1.34775 * 119.99754 * 164.11233 * 9 8 6 12 12 C 1.36893 * 119.99798 * 184.12448 * 11 9 8 13 13 H 1.07994 * 120.00164 * 21.71778 * 12 11 9 14 14 C 1.39008 * 119.99749 * 201.72106 * 12 11 9 15 15 N 1.31406 * 120.00358 * 22.95014 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 202.95206 * 14 12 11 17 17 H 1.48499 * 109.47001 * 59.99357 * 16 14 12 18 18 H 1.48492 * 109.47276 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46584 * 299.99999 * 16 14 12 20 20 C 1.46500 * 120.00196 * 4.12922 * 11 9 8 21 21 C 1.47206 * 109.47217 * 82.95533 * 20 11 9 22 22 N 5.74915 * 135.23742 * 93.46460 * 2 1 3 23 23 S 1.70917 * 124.70246 * 269.71969 * 4 3 2 24 24 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47142 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47163 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.47310 * 119.99898 * 2 1 3 28 28 H 1.09004 * 109.47473 * 239.99674 * 2 1 3 29 29 H 1.08997 * 109.46822 * 299.99883 * 3 2 1 30 30 H 1.09002 * 109.46959 * 59.99993 * 3 2 1 31 31 H 1.08999 * 109.47299 * 90.02179 * 7 6 5 32 32 H 1.08999 * 109.47173 * 210.02910 * 7 6 5 33 33 H 1.09008 * 109.46967 * 330.02463 * 7 6 5 34 34 H 0.96993 * 120.00065 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47248 * 202.95689 * 20 11 9 36 36 H 1.09003 * 109.46911 * 322.95356 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2840 1.4428 -1.0627 6 6 5.5829 1.4433 -0.8973 7 6 6.5576 1.4431 -2.0466 8 6 5.9752 1.4438 0.4131 9 6 7.3566 1.4449 0.9027 10 8 8.2692 1.1570 0.1504 11 7 7.6164 1.7650 2.1859 12 6 8.9115 1.8484 2.6216 13 1 9.7104 2.0091 1.9130 14 6 9.1981 1.7263 3.9763 15 7 8.3585 1.1029 4.7721 16 14 10.7769 2.4484 4.6658 17 1 10.7974 3.9137 4.4253 18 1 10.8452 2.1858 6.1257 19 1 11.9430 1.8203 3.9942 20 6 6.5131 2.0234 3.1143 21 6 6.0038 0.7458 3.6390 22 7 5.6121 -0.2447 4.0410 23 16 4.5195 1.4496 1.4062 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 6.7926 2.4707 -2.3239 32 1 7.4713 0.9292 -1.7481 33 1 6.1138 0.9292 -2.8994 34 1 8.5584 1.0181 5.7174 35 1 6.8697 2.6390 3.9401 36 1 5.7126 2.5462 2.5907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195452477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:15 Heat of formation + Delta-G solvation = 19.526568 kcal Electronic energy + Delta-G solvation = -21137.379413 eV Core-core repulsion = 17941.138142 eV Total energy + Delta-G solvation = -3196.241271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24336 -40.31407 -37.69229 -36.36762 -36.08817 -33.98175 -32.60325 -29.80355 -29.30031 -28.99213 -26.59907 -24.24389 -22.86108 -22.22119 -20.10378 -19.82143 -19.10033 -18.39908 -17.62384 -16.86317 -16.24678 -16.15370 -15.84805 -15.57157 -15.31916 -15.19378 -14.70208 -14.39595 -14.18087 -13.91916 -13.60911 -13.41571 -13.30589 -13.28459 -12.94820 -12.91015 -12.55960 -12.47387 -12.44594 -12.30635 -12.12806 -12.06439 -11.64956 -11.23109 -10.74100 -10.49358 -10.32364 -10.08130 -9.59308 -8.52491 -6.07518 -0.71246 0.21035 0.62193 1.35573 1.47811 1.54160 1.57879 1.75293 2.06735 2.24319 2.30198 2.84915 2.93920 3.07364 3.30964 3.81174 3.86111 4.07920 4.08975 4.12467 4.24203 4.51643 4.56764 4.67058 4.73325 4.77784 4.87219 4.92488 4.94640 5.21570 5.25789 5.38037 5.43289 5.43728 5.89025 6.24822 6.66669 6.81825 6.94906 7.13815 7.72179 8.51905 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.005226 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.453801 B = 5356.916807 C = 6312.521840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.042 4.042 4 C 0.037 3.963 5 N -0.489 5.489 6 C 0.122 3.878 7 C -0.082 4.082 8 C -0.306 4.306 9 C 0.515 3.485 10 O -0.592 6.592 11 N -0.436 5.436 12 C -0.344 4.344 13 H 0.093 0.907 14 C 0.010 3.990 15 N -0.883 5.883 16 Si 0.995 3.005 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.279 1.279 20 C 0.211 3.789 21 C 0.246 3.754 22 N -0.473 5.473 23 S 0.182 5.818 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.281 0.719 35 H 0.139 0.861 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 5.499 -4.319 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.083 4.083 4 C -0.238 4.238 5 N -0.204 5.204 6 C -0.016 4.016 7 C -0.141 4.141 8 C -0.430 4.430 9 C 0.305 3.695 10 O -0.479 6.479 11 N -0.154 5.154 12 C -0.471 4.471 13 H 0.111 0.889 14 C -0.194 4.194 15 N -0.519 5.519 16 Si 0.818 3.182 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.204 1.204 20 C 0.083 3.917 21 C -0.073 4.073 22 N -0.154 5.154 23 S 0.443 5.557 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.046 3.866 -3.277 14.932 hybrid contribution 1.904 0.202 -0.298 1.938 sum -12.142 4.068 -3.575 13.295 Atomic orbital electron populations 1.21720 0.92873 1.02579 1.03018 1.21529 0.97899 0.94493 1.01884 1.20571 0.82214 0.99438 1.06043 1.28333 1.03285 0.99727 0.92443 1.66080 1.03893 1.18052 1.32344 1.21079 0.90561 0.96481 0.93513 1.20550 0.96362 1.03776 0.93413 1.25800 0.97909 1.21288 0.98013 1.17034 0.86331 0.82417 0.83711 1.90582 1.46311 1.54369 1.56639 1.43622 1.06339 1.58623 1.06794 1.19710 0.83808 1.50534 0.93026 0.88935 1.26123 1.02638 0.94755 0.95919 1.69927 1.39654 1.35521 1.06807 0.84961 0.76953 0.79537 0.76772 1.17972 1.20143 1.20423 1.19162 0.89174 0.88118 0.95284 1.29267 0.90564 0.95255 0.92182 1.80981 1.13165 1.10897 1.10321 1.84193 0.95110 1.66443 1.09999 0.92120 0.91391 0.91459 0.92704 0.92608 0.87441 0.87185 0.89612 0.90241 0.89532 0.90883 0.84317 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -2.26 5.92 30.60 0.18 -2.07 16 3 C -0.04 -0.82 5.79 29.85 0.17 -0.64 16 4 C 0.04 1.06 6.63 88.47 0.59 1.65 16 5 N -0.49 -16.39 10.49 -177.53 -1.86 -18.25 16 6 C 0.12 4.59 6.83 42.35 0.29 4.88 16 7 C -0.08 -2.81 9.92 71.24 0.71 -2.11 16 8 C -0.31 -12.53 6.19 24.10 0.15 -12.38 16 9 C 0.51 25.16 7.45 86.41 0.64 25.81 16 10 O -0.59 -32.24 14.13 -4.44 -0.06 -32.31 16 11 N -0.44 -21.00 2.59 -650.07 -1.68 -22.69 16 12 C -0.34 -17.68 9.20 84.09 0.77 -16.91 16 13 H 0.09 5.03 7.50 -2.91 -0.02 5.01 16 14 C 0.01 0.48 4.78 84.94 0.41 0.88 16 15 N -0.88 -43.25 9.79 21.68 0.21 -43.04 16 16 Si 1.00 38.28 29.61 68.60 2.03 40.31 16 17 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 18 H -0.28 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 20 C 0.21 8.49 4.74 84.58 0.40 8.89 16 21 C 0.25 10.75 10.94 89.42 0.98 11.73 16 22 N -0.47 -21.95 18.55 20.04 0.37 -21.57 16 23 S 0.18 5.90 16.58 -56.49 -0.94 4.96 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 3.17 5.84 -2.39 -0.01 3.15 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 35 H 0.14 5.42 6.71 -2.39 -0.02 5.41 16 36 H 0.12 3.99 4.67 -19.56 -0.09 3.89 16 Total: -1.00 -64.74 317.68 5.10 -59.64 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.03 Total: 14.45 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 6.00 Total: 18.51 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -2.96 Total: -105.56 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.06 Total: -32.31 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -0.94 Total: 4.96 kcal Total: -64.74 5.10 -59.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.162 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds