Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38408 * 119.82787 * 2 1 4 4 C 1.37877 * 120.18200 * 180.02562 * 3 2 1 5 5 C 1.39856 * 119.85208 * 359.97438 * 4 3 2 6 6 C 1.47215 * 120.16348 * 179.97438 * 5 4 3 7 7 C 1.34806 * 119.99941 * 132.01545 * 6 5 4 8 8 C 1.46423 * 120.00108 * 348.74977 * 7 6 5 9 9 O 1.21695 * 120.00119 * 353.30197 * 8 7 6 10 10 N 1.34781 * 120.00063 * 173.29938 * 8 7 6 11 11 C 1.46504 * 119.99979 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46957 * 34.99647 * 11 10 8 13 13 C 1.53008 * 109.46887 * 274.99881 * 11 10 8 14 14 C 1.50688 * 109.47148 * 155.00065 * 11 10 8 15 15 H 1.08006 * 120.00296 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00476 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99190 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00379 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46935 * 120.00182 * 18 16 14 21 21 H 1.48499 * 109.47253 * 239.99897 * 18 16 14 22 22 C 1.39803 * 119.67549 * 0.05279 * 5 4 3 23 23 C 1.38034 * 119.80944 * 359.93168 * 22 5 4 24 24 Cl 1.73596 * 119.92410 * 180.02562 * 23 22 5 25 25 H 1.09004 * 109.46883 * 90.00455 * 1 2 3 26 26 H 1.09003 * 109.46732 * 210.00114 * 1 2 3 27 27 H 1.09000 * 109.47252 * 330.00639 * 1 2 3 28 28 H 1.07997 * 119.91407 * 359.96816 * 3 2 1 29 29 H 1.08001 * 120.07214 * 179.72624 * 4 3 2 30 30 H 1.08003 * 119.99572 * 312.01535 * 6 5 4 31 31 H 1.08000 * 119.99921 * 168.75317 * 7 6 5 32 32 H 0.96991 * 119.99928 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.46938 * 60.00316 * 13 11 10 34 34 H 1.08999 * 109.46643 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47039 * 300.00208 * 13 11 10 36 36 H 0.97004 * 119.99320 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.09250 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2007 0.0000 4 6 3.5742 1.2092 -0.0005 5 6 4.2779 0.0006 -0.0005 6 6 5.7500 0.0017 -0.0017 7 6 6.4253 -0.7788 0.8655 8 6 5.7156 -1.4357 1.9650 9 8 4.5431 -1.1823 2.1700 10 7 6.3609 -2.3210 2.7502 11 6 5.6507 -2.9786 3.8499 12 1 4.6159 -3.1581 3.5583 13 6 5.6831 -2.0797 5.0877 14 6 6.3189 -4.2919 4.1653 15 1 7.1857 -4.6057 3.6025 16 6 5.8238 -5.0932 5.1722 17 7 4.7680 -4.7113 5.8572 18 14 6.6517 -6.7215 5.5626 19 1 7.8102 -6.9180 4.6547 20 1 7.1229 -6.7121 6.9709 21 1 5.6803 -7.8286 5.3732 22 6 3.5764 -1.2087 -0.0011 23 6 2.1960 -1.2013 -0.0002 24 17 1.3219 -2.7011 -0.0003 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6513 2.1336 -0.0005 29 1 4.1096 2.1472 -0.0050 30 1 6.2890 0.6278 -0.6973 31 1 7.4897 -0.9196 0.7494 32 1 7.2955 -2.5227 2.5870 33 1 5.1998 -1.1297 4.8596 34 1 5.1551 -2.5692 5.9060 35 1 6.7179 -1.9001 5.3793 36 1 4.4199 -5.2748 6.5659 37 1 4.1129 -2.1460 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255886177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -5.888457 kcal Electronic energy + Delta-G solvation = -20813.265707 eV Core-core repulsion = 17581.585901 eV Total energy + Delta-G solvation = -3231.679806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67119 -38.46729 -36.19701 -35.02440 -33.84306 -32.38137 -31.23378 -30.52883 -28.92211 -26.59075 -25.23731 -23.30829 -22.48778 -21.30309 -20.01382 -19.09282 -17.41712 -16.16468 -15.69036 -15.49414 -15.20470 -14.92998 -14.16766 -14.08593 -13.91164 -13.66146 -13.36835 -12.98212 -12.44883 -12.38815 -12.25172 -12.07365 -11.67915 -11.46412 -11.28016 -11.07119 -11.05476 -10.95217 -10.72498 -10.47776 -10.28322 -10.22646 -9.59109 -9.12828 -9.01401 -8.54375 -8.43291 -7.88446 -7.79125 -6.10850 -4.20005 0.93947 1.51902 1.97697 2.46493 3.24333 3.32114 3.34730 3.86024 4.00082 4.17976 4.42629 4.77712 4.90217 5.04514 5.21399 5.23814 5.28239 5.50497 5.56761 5.63240 5.72047 5.82086 6.00512 6.10063 6.25753 6.31173 6.52775 6.57087 6.69255 6.85666 6.99137 7.02486 7.17779 7.49100 7.59518 7.72147 7.94245 8.17085 8.70088 8.80754 9.16871 9.47781 10.95116 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.004511 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.942878 B = 6204.960494 C = 7065.500680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.046 4.046 6 C -0.053 4.053 7 C -0.188 4.188 8 C 0.518 3.482 9 O -0.540 6.540 10 N -0.702 5.702 11 C 0.265 3.735 12 H 0.049 0.951 13 C -0.146 4.146 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.029 4.029 23 C -0.038 4.038 24 Cl -0.074 7.074 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.388 0.612 33 H 0.014 0.986 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 10.549 -13.509 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.046 4.046 6 C -0.073 4.073 7 C -0.209 4.209 8 C 0.305 3.695 9 O -0.420 6.420 10 N -0.348 5.348 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.204 4.204 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.048 4.048 23 C -0.065 4.065 24 Cl -0.046 7.046 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.220 0.780 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.935 10.481 -13.152 17.072 hybrid contribution 1.043 -1.154 0.423 1.612 sum -1.892 9.327 -12.729 15.893 Atomic orbital electron populations 1.20846 0.90852 1.03342 1.02314 1.19730 0.96316 0.91512 1.00112 1.20705 0.93973 0.96642 1.02697 1.21158 0.93992 0.96981 0.99627 1.18692 0.92749 0.92659 1.00548 1.22184 0.92221 0.95926 0.96997 1.23369 1.00608 1.00194 0.96714 1.18417 0.87219 0.80623 0.83265 1.90852 1.15694 1.63326 1.72158 1.46533 1.14437 1.41370 1.32484 1.18731 0.93721 0.89745 0.81512 0.93279 1.22063 0.99102 0.97319 1.01940 1.21255 1.14415 1.03180 1.18300 0.92089 1.24889 0.94888 0.98267 0.95660 1.69923 1.22550 1.37494 1.22052 0.86411 0.79350 0.83267 0.78172 1.19742 1.20889 1.20874 1.20959 0.91627 0.97960 0.94280 1.20531 0.92172 0.86481 1.07279 1.98344 1.76473 1.32742 1.96999 0.91127 0.90880 0.91411 0.85683 0.85872 0.84896 0.85299 0.77990 0.96673 0.89227 0.95604 0.92663 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.60 36.01 0.35 -1.00 16 2 C -0.08 -1.09 5.89 -104.47 -0.62 -1.70 16 3 C -0.12 -1.58 9.68 -39.65 -0.38 -1.96 16 4 C -0.10 -1.32 9.80 -39.11 -0.38 -1.70 16 5 C -0.05 -0.69 4.34 -105.06 -0.46 -1.15 16 6 C -0.05 -0.68 9.78 -37.15 -0.36 -1.05 16 7 C -0.19 -2.68 9.92 -37.51 -0.37 -3.05 16 8 C 0.52 10.18 6.92 -12.96 -0.09 10.09 16 9 O -0.54 -12.40 12.14 5.19 0.06 -12.34 16 10 N -0.70 -14.59 5.07 -56.33 -0.29 -14.87 16 11 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 12 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 14 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -25.17 11.32 55.43 0.63 -24.55 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.03 -0.50 6.56 -39.07 -0.26 -0.76 16 23 C -0.04 -0.63 6.31 -39.57 -0.25 -0.88 16 24 Cl -0.07 -1.20 27.27 -51.86 -1.41 -2.62 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.90 6.88 -51.93 -0.36 0.55 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.39 6.96 8.52 -40.82 -0.35 6.61 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.12 2.25 7.45 -52.49 -0.39 1.86 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -31.27 328.58 -8.85 -40.12 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.73 Total: 6.23 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.05 Total: -12.72 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.34 Total: -39.42 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.06 Total: -12.34 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.41 Total: -2.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.27 -8.85 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255886177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.234 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds