Wall clock time and date at job start Tue Mar 31 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38408 * 119.82787 * 2 1 4 4 C 1.37877 * 120.18200 * 180.02562 * 3 2 1 5 5 C 1.39856 * 119.85208 * 359.97438 * 4 3 2 6 6 C 1.47215 * 120.16348 * 179.97438 * 5 4 3 7 7 C 1.34806 * 119.99941 * 132.01545 * 6 5 4 8 8 C 1.46423 * 120.00108 * 348.74977 * 7 6 5 9 9 O 1.21695 * 120.00119 * 353.30197 * 8 7 6 10 10 N 1.34781 * 120.00063 * 173.29938 * 8 7 6 11 11 C 1.46504 * 119.99979 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46957 * 34.99647 * 11 10 8 13 13 C 1.53008 * 109.46887 * 274.99881 * 11 10 8 14 14 C 1.50688 * 109.47148 * 155.00065 * 11 10 8 15 15 H 1.08006 * 120.00296 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00476 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99190 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00379 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46935 * 120.00182 * 18 16 14 21 21 H 1.48499 * 109.47253 * 239.99897 * 18 16 14 22 22 C 1.39803 * 119.67549 * 0.05279 * 5 4 3 23 23 C 1.38034 * 119.80944 * 359.93168 * 22 5 4 24 24 Cl 1.73596 * 119.92410 * 180.02562 * 23 22 5 25 25 H 1.09004 * 109.46883 * 90.00455 * 1 2 3 26 26 H 1.09003 * 109.46732 * 210.00114 * 1 2 3 27 27 H 1.09000 * 109.47252 * 330.00639 * 1 2 3 28 28 H 1.07997 * 119.91407 * 359.96816 * 3 2 1 29 29 H 1.08001 * 120.07214 * 179.72624 * 4 3 2 30 30 H 1.08003 * 119.99572 * 312.01535 * 6 5 4 31 31 H 1.08000 * 119.99921 * 168.75317 * 7 6 5 32 32 H 0.96991 * 119.99928 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.46938 * 60.00316 * 13 11 10 34 34 H 1.08999 * 109.46643 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47039 * 300.00208 * 13 11 10 36 36 H 0.97004 * 119.99320 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.09250 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2007 0.0000 4 6 3.5742 1.2092 -0.0005 5 6 4.2779 0.0006 -0.0005 6 6 5.7500 0.0017 -0.0017 7 6 6.4253 -0.7788 0.8655 8 6 5.7156 -1.4357 1.9650 9 8 4.5431 -1.1823 2.1700 10 7 6.3609 -2.3210 2.7502 11 6 5.6507 -2.9786 3.8499 12 1 4.6159 -3.1581 3.5583 13 6 5.6831 -2.0797 5.0877 14 6 6.3189 -4.2919 4.1653 15 1 7.1857 -4.6057 3.6025 16 6 5.8238 -5.0932 5.1722 17 7 4.7680 -4.7113 5.8572 18 14 6.6517 -6.7215 5.5626 19 1 7.8102 -6.9180 4.6547 20 1 7.1229 -6.7121 6.9709 21 1 5.6803 -7.8286 5.3732 22 6 3.5764 -1.2087 -0.0011 23 6 2.1960 -1.2013 -0.0002 24 17 1.3219 -2.7011 -0.0003 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6513 2.1336 -0.0005 29 1 4.1096 2.1472 -0.0050 30 1 6.2890 0.6278 -0.6973 31 1 7.4897 -0.9196 0.7494 32 1 7.2955 -2.5227 2.5870 33 1 5.1998 -1.1297 4.8596 34 1 5.1551 -2.5692 5.9060 35 1 6.7179 -1.9001 5.3793 36 1 4.4199 -5.2748 6.5659 37 1 4.1129 -2.1460 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255886177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:23 Heat of formation + Delta-G solvation = -24.421673 kcal Electronic energy + Delta-G solvation = -20814.069368 eV Core-core repulsion = 17581.585901 eV Total energy + Delta-G solvation = -3232.483467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97043 -39.83533 -37.44510 -36.76958 -35.09860 -34.28356 -32.40636 -31.64336 -30.74835 -27.70859 -27.33540 -24.66719 -23.67202 -22.64281 -21.66046 -20.57189 -18.87824 -17.87999 -17.23177 -16.76147 -16.62663 -16.29011 -15.74842 -15.46542 -15.21023 -14.80902 -14.56207 -14.44283 -14.36619 -13.68773 -13.45283 -13.30295 -13.16996 -12.96670 -12.87542 -12.74552 -12.55283 -12.39823 -12.28857 -12.14689 -12.11184 -11.66413 -11.09923 -10.75529 -10.63430 -10.53537 -9.76678 -9.44542 -9.02183 -8.18613 -6.36040 -0.17271 0.37883 0.87088 1.26141 1.42206 1.43103 1.55295 2.35954 2.53816 2.78346 2.79067 3.12107 3.75093 3.86361 4.00698 4.12726 4.24346 4.42626 4.61350 4.66541 4.73918 4.76232 4.77840 4.91347 4.97304 5.08353 5.10685 5.18648 5.27130 5.41506 5.47562 5.51428 5.59719 5.65364 5.71989 5.93822 5.99467 6.10718 6.73158 7.06472 7.32613 7.65558 8.87853 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.004511 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.942878 B = 6204.960494 C = 7065.500680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.097 4.097 5 C -0.068 4.068 6 C -0.025 4.025 7 C -0.205 4.205 8 C 0.511 3.489 9 O -0.580 6.580 10 N -0.704 5.704 11 C 0.274 3.726 12 H -0.006 1.006 13 C -0.130 4.130 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.285 1.285 22 C -0.054 4.054 23 C -0.064 4.064 24 Cl -0.088 7.088 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.403 0.597 33 H 0.010 0.990 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 12.350 -14.874 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.114 4.114 5 C -0.068 4.068 6 C -0.045 4.045 7 C -0.225 4.225 8 C 0.301 3.699 9 O -0.463 6.463 10 N -0.352 5.352 11 C 0.170 3.830 12 H 0.012 0.988 13 C -0.189 4.189 14 C -0.583 4.583 15 H 0.090 0.910 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.796 3.204 19 H -0.182 1.182 20 H -0.203 1.203 21 H -0.211 1.211 22 C -0.073 4.073 23 C -0.091 4.091 24 Cl -0.060 7.060 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.178 0.822 29 H 0.177 0.823 30 H 0.203 0.797 31 H 0.187 0.813 32 H 0.238 0.762 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.207 12.295 -14.548 19.086 hybrid contribution 0.402 -1.618 0.780 1.841 sum -0.805 10.678 -13.767 17.441 Atomic orbital electron populations 1.20890 0.89123 1.03591 1.03547 1.20150 0.97838 0.91274 0.99521 1.21190 0.94347 0.97334 1.01052 1.21623 0.94401 0.97601 0.97818 1.19091 0.94382 0.92571 1.00795 1.22718 0.91087 0.94410 0.96238 1.23301 1.02229 1.01090 0.95903 1.19341 0.86927 0.79728 0.83936 1.90836 1.17687 1.64473 1.73302 1.46273 1.15037 1.41923 1.31951 1.18240 0.91434 0.90394 0.82883 0.98764 1.21864 0.99348 0.96607 1.01091 1.21592 1.14671 1.03691 1.18384 0.90953 1.25815 0.95383 1.01950 0.95515 1.70078 1.24063 1.38942 1.22624 0.85305 0.78483 0.78368 0.78237 1.18250 1.20297 1.21101 1.20923 0.92069 0.98020 0.96286 1.20825 0.92385 0.86921 1.08944 1.98324 1.76665 1.33817 1.97158 0.89322 0.92378 0.89367 0.82171 0.82269 0.79668 0.81340 0.76196 0.97128 0.91791 0.94199 0.92644 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.60 71.24 0.68 -1.85 16 2 C -0.09 -2.44 5.89 -19.76 -0.12 -2.55 16 3 C -0.12 -2.83 9.68 22.22 0.22 -2.61 16 4 C -0.10 -2.27 9.80 22.58 0.22 -2.05 16 5 C -0.07 -1.94 4.34 -20.15 -0.09 -2.03 16 6 C -0.03 -0.56 9.78 23.84 0.23 -0.33 16 7 C -0.20 -5.37 9.92 23.61 0.23 -5.14 16 8 C 0.51 20.22 6.92 86.37 0.60 20.81 16 9 O -0.58 -27.63 12.14 -4.33 -0.05 -27.68 16 10 N -0.70 -29.61 5.07 -450.33 -2.28 -31.89 16 11 C 0.27 14.58 2.56 44.24 0.11 14.69 16 12 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 13 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 14 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 15 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -54.08 11.32 21.45 0.24 -53.83 16 18 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.05 -1.89 6.56 22.60 0.15 -1.74 16 23 C -0.06 -2.19 6.31 22.28 0.14 -2.05 16 24 Cl -0.09 -3.03 27.27 -2.72 -0.07 -3.11 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 1.45 6.88 -2.39 -0.02 1.44 16 27 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 28 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.40 14.20 8.52 -92.71 -0.79 13.41 16 33 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.10 3.83 7.45 -2.91 -0.02 3.80 16 Total: -1.00 -72.57 328.58 3.88 -68.69 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.30 Total: 22.01 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.72 Total: -19.07 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.04 Total: -85.72 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.68 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.07 Total: -3.11 kcal Total: -72.57 3.88 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255886177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.268 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds