Wall clock time and date at job start Tue Mar 31 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 119.99947 * 2 1 4 4 C 1.46385 * 119.99862 * 7.07560 * 3 2 1 5 5 O 1.21703 * 120.00141 * 5.95109 * 4 3 2 6 6 N 1.34780 * 119.99609 * 185.95799 * 4 3 2 7 7 C 1.46496 * 120.00339 * 359.97438 * 6 4 3 8 8 C 1.46507 * 119.99498 * 179.97438 * 6 4 3 9 9 C 1.50700 * 109.46959 * 89.99948 * 8 6 4 10 10 H 1.07993 * 120.00096 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99759 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00576 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47313 * 60.00471 * 13 11 9 15 15 H 1.48503 * 109.47056 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47554 * 300.00289 * 13 11 9 17 17 C 1.47147 * 120.00561 * 180.02562 * 2 1 3 18 18 C 1.39884 * 120.17539 * 284.99778 * 17 2 1 19 19 C 1.37840 * 119.83633 * 179.74363 * 18 17 2 20 20 C 1.38462 * 120.20411 * 0.25530 * 19 18 17 21 21 C 1.38316 * 120.37176 * 0.02562 * 20 19 18 22 22 C 1.38084 * 120.15511 * 359.95920 * 21 20 19 23 23 Cl 1.73598 * 120.10388 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.46759 * 275.49921 * 1 2 3 25 25 H 1.08994 * 109.47547 * 35.50358 * 1 2 3 26 26 H 1.08997 * 109.46877 * 155.51000 * 1 2 3 27 27 H 1.08001 * 119.99980 * 187.07370 * 3 2 1 28 28 H 1.08996 * 109.47169 * 90.00154 * 7 6 4 29 29 H 1.09004 * 109.46882 * 210.00226 * 7 6 4 30 30 H 1.08994 * 109.46893 * 329.99608 * 7 6 4 31 31 H 1.09000 * 109.46587 * 209.99986 * 8 6 4 32 32 H 1.08999 * 109.46953 * 329.99731 * 8 6 4 33 33 H 0.96993 * 120.00767 * 179.97438 * 12 11 9 34 34 H 1.07999 * 120.08080 * 0.02598 * 18 17 2 35 35 H 1.07995 * 119.89745 * 180.23288 * 19 18 17 36 36 H 1.08000 * 119.80955 * 180.02562 * 20 19 18 37 37 H 1.07992 * 119.92367 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1812 1.1679 0.0000 4 6 1.4576 2.4308 0.1562 5 8 0.2641 2.4229 0.3941 6 7 2.1132 3.6023 0.0363 7 6 3.5499 3.6118 -0.2497 8 6 1.3888 4.8662 0.1920 9 6 1.4179 5.2868 1.6389 10 1 1.9255 4.6743 2.3692 11 6 0.7974 6.4542 2.0299 12 7 0.1796 7.2006 1.1405 13 14 0.8328 6.9753 3.8234 14 1 2.2411 7.1543 4.2592 15 1 0.0987 8.2565 3.9812 16 1 0.1863 5.9292 4.6558 17 6 2.2428 -1.2743 -0.0006 18 6 2.3234 -2.0402 1.1672 19 6 3.0101 -3.2353 1.1574 20 6 3.6240 -3.6765 -0.0027 21 6 3.5546 -2.9232 -1.1606 22 6 2.8704 -1.7238 -1.1679 23 17 2.7836 -0.7797 -2.6221 24 1 -0.3633 0.0985 1.0230 25 1 -0.3634 0.8365 -0.5968 26 1 -0.3633 -0.9352 -0.4260 27 1 3.2551 1.1714 -0.1152 28 1 3.7056 3.6234 -1.3284 29 1 4.0025 4.4995 0.1923 30 1 4.0107 2.7197 0.1744 31 1 1.8628 5.6342 -0.4193 32 1 0.3551 4.7342 -0.1273 33 1 -0.2572 8.0217 1.4156 34 1 1.8450 -1.6981 2.0730 35 1 3.0698 -3.8292 2.0574 36 1 4.1599 -4.6141 -0.0033 37 1 4.0364 -3.2740 -2.0612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263872488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:31 Heat of formation + Delta-G solvation = 1.623298 kcal Electronic energy + Delta-G solvation = -20539.711212 eV Core-core repulsion = 17308.357140 eV Total energy + Delta-G solvation = -3231.354072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72862 -38.84176 -36.53381 -35.28531 -34.30952 -32.57388 -31.03737 -30.10930 -28.36638 -27.05830 -25.58905 -23.91290 -22.77588 -22.56247 -19.94206 -17.96386 -17.05857 -16.56769 -16.40331 -15.66498 -15.46397 -14.99327 -14.41007 -14.28622 -14.07907 -13.76350 -13.63292 -12.92116 -12.67739 -12.56427 -12.16490 -11.99499 -11.93047 -11.74923 -11.68364 -11.60047 -11.27501 -11.05753 -10.90923 -10.84655 -10.51834 -10.11735 -9.60334 -9.23961 -9.01144 -8.76290 -8.65594 -8.40450 -7.53739 -6.01147 -4.06016 0.82957 0.98035 1.63158 2.00849 3.33701 3.34292 3.37877 3.41043 3.97771 4.05406 4.45185 4.54294 4.57030 4.73276 4.99185 5.12288 5.19486 5.29863 5.33708 5.50439 5.61286 5.78226 5.80746 5.90999 5.99902 6.00945 6.12340 6.15039 6.23625 6.34437 6.50292 6.60977 6.78182 7.14422 7.48768 7.59551 7.95441 8.26951 8.48440 8.93429 9.15132 9.58922 11.06736 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003715 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.633921 B = 7536.004064 C = 7974.324785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.026 4.026 3 C -0.183 4.183 4 C 0.534 3.466 5 O -0.537 6.537 6 N -0.597 5.597 7 C 0.084 3.916 8 C 0.246 3.754 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.038 4.038 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.028 4.028 23 Cl -0.059 7.059 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 -21.258 -4.420 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.028 4.028 3 C -0.204 4.204 4 C 0.323 3.677 5 O -0.417 6.417 6 N -0.328 5.328 7 C -0.061 4.061 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.039 4.039 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.054 4.054 23 Cl -0.030 7.030 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.922 -20.936 -4.461 22.825 hybrid contribution 0.310 0.471 0.859 1.027 sum 8.232 -20.465 -3.603 22.351 Atomic orbital electron populations 1.21007 0.89517 1.02179 1.03760 1.20847 0.96389 0.90253 0.95339 1.23048 1.00097 0.92542 1.04687 1.18055 0.87065 0.83852 0.78711 1.90745 1.14924 1.87210 1.48835 1.48054 1.08652 1.07793 1.68336 1.21664 0.82413 1.02435 0.99551 1.19281 0.93035 0.78220 0.96813 1.21406 1.34750 1.06576 0.93697 0.92533 1.24933 0.95070 0.96337 0.97760 1.69922 1.35411 1.14447 1.33691 0.86562 0.78076 0.77772 0.85021 1.20275 1.21181 1.20194 1.18928 0.97380 0.95171 0.92372 1.21319 0.98599 0.93967 0.97116 1.21182 0.97427 0.96159 0.98516 1.21182 0.99646 0.99833 0.92283 1.20988 0.99397 0.93196 0.99439 1.21185 1.01608 0.94393 0.88242 1.98394 1.97167 1.72151 1.35298 0.90307 0.88566 0.93335 0.85924 0.93769 0.90844 0.92389 0.95049 0.93758 0.92685 0.84673 0.85194 0.85173 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 8.48 36.00 0.31 -1.39 16 2 C -0.03 -0.39 4.62 -102.21 -0.47 -0.87 16 3 C -0.18 -3.06 8.61 -37.51 -0.32 -3.39 16 4 C 0.53 11.53 7.47 -12.98 -0.10 11.43 16 5 O -0.54 -13.34 12.90 5.19 0.07 -13.27 16 6 N -0.60 -13.21 2.86 -184.62 -0.53 -13.74 16 7 C 0.08 1.41 10.19 59.84 0.61 2.02 16 8 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 9 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.04 -0.47 5.26 -105.03 -0.55 -1.02 16 18 C -0.09 -0.97 9.80 -39.11 -0.38 -1.35 16 19 C -0.11 -0.96 10.03 -39.64 -0.40 -1.36 16 20 C -0.11 -0.87 10.04 -39.47 -0.40 -1.27 16 21 C -0.11 -1.02 9.82 -39.61 -0.39 -1.41 16 22 C -0.03 -0.32 6.36 -39.00 -0.25 -0.57 16 23 Cl -0.06 -0.72 27.79 -51.86 -1.44 -2.16 16 24 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 25 H 0.10 1.76 6.16 -51.93 -0.32 1.44 16 26 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.12 1.81 6.15 -52.49 -0.32 1.49 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.06 0.83 6.03 -51.93 -0.31 0.52 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.87 332.88 -8.64 -41.50 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.68 Total: -1.78 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.79 Total: -6.44 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.21 Total: -39.93 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.44 Total: -2.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.87 -8.64 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263872488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds