Wall clock time and date at job start Tue Mar 31 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 119.99947 * 2 1 4 4 C 1.46385 * 119.99862 * 7.07560 * 3 2 1 5 5 O 1.21703 * 120.00141 * 5.95109 * 4 3 2 6 6 N 1.34780 * 119.99609 * 185.95799 * 4 3 2 7 7 C 1.46496 * 120.00339 * 359.97438 * 6 4 3 8 8 C 1.46507 * 119.99498 * 179.97438 * 6 4 3 9 9 C 1.50700 * 109.46959 * 89.99948 * 8 6 4 10 10 H 1.07993 * 120.00096 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99759 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00576 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47313 * 60.00471 * 13 11 9 15 15 H 1.48503 * 109.47056 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47554 * 300.00289 * 13 11 9 17 17 C 1.47147 * 120.00561 * 180.02562 * 2 1 3 18 18 C 1.39884 * 120.17539 * 284.99778 * 17 2 1 19 19 C 1.37840 * 119.83633 * 179.74363 * 18 17 2 20 20 C 1.38462 * 120.20411 * 0.25530 * 19 18 17 21 21 C 1.38316 * 120.37176 * 0.02562 * 20 19 18 22 22 C 1.38084 * 120.15511 * 359.95920 * 21 20 19 23 23 Cl 1.73598 * 120.10388 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.46759 * 275.49921 * 1 2 3 25 25 H 1.08994 * 109.47547 * 35.50358 * 1 2 3 26 26 H 1.08997 * 109.46877 * 155.51000 * 1 2 3 27 27 H 1.08001 * 119.99980 * 187.07370 * 3 2 1 28 28 H 1.08996 * 109.47169 * 90.00154 * 7 6 4 29 29 H 1.09004 * 109.46882 * 210.00226 * 7 6 4 30 30 H 1.08994 * 109.46893 * 329.99608 * 7 6 4 31 31 H 1.09000 * 109.46587 * 209.99986 * 8 6 4 32 32 H 1.08999 * 109.46953 * 329.99731 * 8 6 4 33 33 H 0.96993 * 120.00767 * 179.97438 * 12 11 9 34 34 H 1.07999 * 120.08080 * 0.02598 * 18 17 2 35 35 H 1.07995 * 119.89745 * 180.23288 * 19 18 17 36 36 H 1.08000 * 119.80955 * 180.02562 * 20 19 18 37 37 H 1.07992 * 119.92367 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1812 1.1679 0.0000 4 6 1.4576 2.4308 0.1562 5 8 0.2641 2.4229 0.3941 6 7 2.1132 3.6023 0.0363 7 6 3.5499 3.6118 -0.2497 8 6 1.3888 4.8662 0.1920 9 6 1.4179 5.2868 1.6389 10 1 1.9255 4.6743 2.3692 11 6 0.7974 6.4542 2.0299 12 7 0.1796 7.2006 1.1405 13 14 0.8328 6.9753 3.8234 14 1 2.2411 7.1543 4.2592 15 1 0.0987 8.2565 3.9812 16 1 0.1863 5.9292 4.6558 17 6 2.2428 -1.2743 -0.0006 18 6 2.3234 -2.0402 1.1672 19 6 3.0101 -3.2353 1.1574 20 6 3.6240 -3.6765 -0.0027 21 6 3.5546 -2.9232 -1.1606 22 6 2.8704 -1.7238 -1.1679 23 17 2.7836 -0.7797 -2.6221 24 1 -0.3633 0.0985 1.0230 25 1 -0.3634 0.8365 -0.5968 26 1 -0.3633 -0.9352 -0.4260 27 1 3.2551 1.1714 -0.1152 28 1 3.7056 3.6234 -1.3284 29 1 4.0025 4.4995 0.1923 30 1 4.0107 2.7197 0.1744 31 1 1.8628 5.6342 -0.4193 32 1 0.3551 4.7342 -0.1273 33 1 -0.2572 8.0217 1.4156 34 1 1.8450 -1.6981 2.0730 35 1 3.0698 -3.8292 2.0574 36 1 4.1599 -4.6141 -0.0033 37 1 4.0364 -3.2740 -2.0612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263872488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:31 Heat of formation + Delta-G solvation = -16.919076 kcal Electronic energy + Delta-G solvation = -20540.515270 eV Core-core repulsion = 17308.357140 eV Total energy + Delta-G solvation = -3232.158130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93793 -40.10407 -37.39116 -36.87882 -35.70683 -34.72421 -31.77077 -31.13319 -30.11980 -28.58178 -27.24038 -25.38530 -24.03655 -23.50831 -21.26861 -19.37692 -18.69572 -18.20540 -17.70456 -16.95689 -16.52349 -16.33913 -16.17809 -15.76781 -15.03959 -14.75451 -14.73845 -14.46757 -14.10131 -13.96568 -13.67359 -13.48985 -13.44319 -13.21116 -12.92073 -12.62738 -12.60471 -12.46812 -12.41840 -12.32446 -12.12167 -11.76968 -11.73103 -10.64654 -10.43551 -10.30215 -9.87816 -9.63287 -9.33478 -8.22030 -6.37768 -0.01375 0.24646 0.39168 1.17098 1.36247 1.40777 1.48348 2.28785 2.43246 2.47676 2.64529 3.06660 3.44305 3.82058 3.96219 4.04073 4.13274 4.36953 4.40966 4.42759 4.50586 4.65702 4.67773 4.76935 4.83919 4.93963 4.96568 5.07768 5.20877 5.23256 5.28148 5.38414 5.43728 5.56180 5.56702 5.84757 5.85133 6.05883 6.69311 6.79106 7.27524 7.48035 8.84620 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003715 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.633921 B = 7536.004064 C = 7974.324785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.004 3.996 3 C -0.200 4.200 4 C 0.525 3.475 5 O -0.584 6.584 6 N -0.608 5.608 7 C 0.080 3.920 8 C 0.261 3.739 9 C -0.544 4.544 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.260 1.260 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.065 4.065 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.098 4.098 21 C -0.112 4.112 22 C -0.038 4.038 23 Cl -0.075 7.075 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.022 0.978 32 H -0.001 1.001 33 H 0.268 0.732 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.848 -24.086 -3.255 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.002 3.998 3 C -0.220 4.220 4 C 0.317 3.683 5 O -0.468 6.468 6 N -0.338 5.338 7 C -0.062 4.062 8 C 0.140 3.860 9 C -0.582 4.582 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.066 4.066 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.065 4.065 23 Cl -0.046 7.046 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.164 -23.780 -3.313 26.073 hybrid contribution -0.392 1.185 0.455 1.329 sum 9.772 -22.595 -2.858 24.783 Atomic orbital electron populations 1.20932 0.90558 1.02085 1.02841 1.21029 0.95972 0.91360 0.91416 1.22781 1.00750 0.90431 1.08077 1.18840 0.86810 0.85106 0.77518 1.90716 1.17064 1.87991 1.50995 1.48065 1.10658 1.06452 1.68650 1.21909 0.79312 1.03732 1.01243 1.18748 0.91200 0.80248 0.95836 1.21665 1.35135 1.06962 0.94469 0.92939 1.25880 0.94346 0.96236 1.02685 1.70047 1.35932 1.14885 1.36014 0.85446 0.78954 0.77390 0.78885 1.18461 1.20205 1.20241 1.18796 0.99294 0.94582 0.93957 1.21455 0.99140 0.94730 0.96412 1.21545 0.95937 0.95177 0.99967 1.21643 0.98239 1.00479 0.91184 1.21299 0.98660 0.92193 1.00926 1.21296 1.02525 0.95318 0.87346 1.98391 1.97296 1.72745 1.36159 0.91041 0.91662 0.90859 0.83594 0.91580 0.91277 0.89329 0.95995 0.98246 0.92346 0.84524 0.82202 0.81616 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.48 71.23 0.60 -2.87 16 2 C 0.00 0.13 4.62 -18.30 -0.08 0.05 16 3 C -0.20 -6.71 8.61 23.61 0.20 -6.51 16 4 C 0.53 23.64 7.47 86.36 0.64 24.28 16 5 O -0.58 -30.94 12.90 -4.36 -0.06 -30.99 16 6 N -0.61 -27.84 2.86 -856.24 -2.45 -30.28 16 7 C 0.08 2.68 10.19 127.77 1.30 3.98 16 8 C 0.26 14.74 5.16 85.63 0.44 15.18 16 9 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.44 5.46 84.65 0.46 0.90 16 12 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 13 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 C -0.07 -1.53 5.26 -20.13 -0.11 -1.63 16 18 C -0.10 -1.84 9.80 22.57 0.22 -1.62 16 19 C -0.11 -1.35 10.03 22.23 0.22 -1.12 16 20 C -0.10 -1.06 10.04 22.34 0.22 -0.84 16 21 C -0.11 -1.66 9.82 22.25 0.22 -1.44 16 22 C -0.04 -0.80 6.36 22.65 0.14 -0.66 16 23 Cl -0.07 -1.75 27.79 -2.72 -0.08 -1.82 16 24 H 0.07 2.40 8.06 -2.38 -0.02 2.38 16 25 H 0.06 2.54 6.16 -2.39 -0.01 2.53 16 26 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 27 H 0.15 4.12 6.15 -2.91 -0.02 4.10 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.09 2.40 6.03 -2.39 -0.01 2.38 16 31 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -75.26 332.88 5.54 -69.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.07 Total: 7.22 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.74 Total: -4.43 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -2.16 Total: -87.41 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -30.99 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.82 kcal Total: -75.26 5.54 -69.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263872488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.793 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds