Wall clock time and date at job start Tue Mar 31 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46853 * 299.99764 * 3 2 1 6 6 H 1.48499 * 109.47205 * 59.99833 * 3 2 1 7 7 C 1.37882 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46555 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99677 * 90.00079 * 10 9 7 12 12 C 1.53000 * 109.47239 * 79.81236 * 11 10 9 13 13 C 1.52995 * 117.49922 * 243.62063 * 12 11 10 14 14 C 1.52993 * 60.00169 * 252.50639 * 13 12 11 15 15 C 1.34776 * 119.99870 * 269.99634 * 10 9 7 16 16 O 1.21550 * 120.00337 * 1.98092 * 15 10 9 17 17 C 1.47791 * 119.99520 * 181.98043 * 15 10 9 18 18 C 1.39614 * 120.13162 * 22.41602 * 17 15 10 19 19 C 1.37899 * 119.86288 * 179.79130 * 18 17 15 20 20 C 1.38514 * 120.13261 * 0.46396 * 19 18 17 21 21 Cl 1.73595 * 119.86732 * 179.76357 * 20 19 18 22 22 C 1.38515 * 120.26167 * 359.79360 * 20 19 18 23 23 C 1.37890 * 120.13371 * 359.96994 * 22 20 19 24 24 H 0.97003 * 119.99778 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47288 * 60.00083 * 9 7 2 26 26 H 1.08998 * 109.47394 * 299.99347 * 9 7 2 27 27 H 1.08998 * 109.47370 * 319.81174 * 11 10 9 28 28 H 1.08999 * 109.47039 * 199.81052 * 11 10 9 29 29 H 1.09004 * 115.54958 * 29.32512 * 12 11 10 30 30 H 1.09000 * 117.50144 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.50028 * 145.02245 * 13 12 11 32 32 H 1.08999 * 117.50431 * 252.51381 * 14 13 12 33 33 H 1.09005 * 117.50055 * 107.48497 * 14 13 12 34 34 H 1.07996 * 120.06633 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.92951 * 180.21087 * 19 18 17 36 36 H 1.07999 * 119.93032 * 179.97438 * 22 20 19 37 37 H 1.08008 * 120.06513 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6789 -4.1694 1.2693 12 6 1.6220 -5.1179 1.8386 13 6 0.9790 -4.7393 3.1742 14 6 1.9796 -5.8947 3.1072 15 6 2.6408 -4.1249 -1.1667 16 8 2.2739 -3.6398 -2.2190 17 6 3.5672 -5.2764 -1.1670 18 6 3.6329 -6.1233 -0.0589 19 6 4.4962 -7.1987 -0.0669 20 6 5.3039 -7.4338 -1.1673 21 17 6.3926 -8.7860 -1.1674 22 6 5.2469 -6.5939 -2.2673 23 6 4.3842 -5.5183 -2.2730 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8592 -3.3598 1.9765 28 1 3.6058 -4.7175 1.1006 29 1 0.9943 -5.6191 1.1016 30 1 1.3086 -3.8143 3.6473 31 1 -0.0720 -4.9913 3.3163 32 1 1.5870 -6.9068 3.2051 33 1 2.9680 -5.7301 3.5363 34 1 3.0063 -5.9388 0.8010 35 1 4.5454 -7.8564 0.7883 36 1 5.8794 -6.7820 -3.1222 37 1 4.3410 -4.8638 -3.1311 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264090678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:31 Heat of formation + Delta-G solvation = 38.036805 kcal Electronic energy + Delta-G solvation = -21043.727813 eV Core-core repulsion = 17813.952749 eV Total energy + Delta-G solvation = -3229.775064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34735 -38.20481 -37.40019 -36.48399 -34.53271 -32.74788 -31.20133 -30.87629 -27.84641 -26.50762 -23.91777 -22.93668 -22.22066 -22.03204 -20.80661 -19.14213 -17.25065 -16.80505 -16.50348 -15.89660 -15.39734 -14.85381 -14.69967 -14.33598 -14.19415 -13.73498 -13.59046 -13.30194 -13.08608 -12.39687 -12.27250 -11.78907 -11.56755 -11.53905 -11.43797 -11.32905 -11.23761 -10.91177 -10.69813 -10.56241 -10.36930 -10.15553 -9.91549 -9.63573 -9.14551 -9.01513 -8.68290 -8.45522 -7.76594 -6.06587 -4.11077 0.79655 1.22245 1.96305 3.13886 3.28457 3.36336 3.40054 3.66050 3.82727 4.03360 4.42966 4.70194 4.70918 4.78623 4.93827 4.97884 5.14988 5.28130 5.29801 5.32116 5.49782 5.60161 5.66123 5.69377 5.87911 5.92996 6.03892 6.07887 6.12627 6.21797 6.34227 6.38757 6.66166 7.04572 7.39125 7.47103 7.89562 8.20061 8.30284 8.83916 8.99194 9.53876 11.01600 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.004488 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.382485 B = 6237.386061 C = 7290.024057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.582 5.582 11 C 0.112 3.888 12 C -0.179 4.179 13 C -0.165 4.165 14 C -0.183 4.183 15 C 0.543 3.457 16 O -0.532 6.532 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.022 4.022 21 Cl -0.077 7.077 22 C -0.122 4.122 23 C -0.054 4.054 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -16.254 4.012 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.312 5.312 11 C -0.012 4.012 12 C -0.199 4.199 13 C -0.202 4.202 14 C -0.220 4.220 15 C 0.330 3.670 16 O -0.409 6.409 17 C -0.119 4.119 18 C -0.130 4.130 19 C -0.140 4.140 20 C -0.049 4.049 21 Cl -0.048 7.048 22 C -0.140 4.140 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.194 0.806 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.374 -15.944 3.459 18.338 hybrid contribution 0.520 0.821 0.038 0.972 sum 8.893 -15.123 3.497 17.889 Atomic orbital electron populations 1.69940 1.05971 1.26911 1.50442 1.24918 0.94863 0.99176 0.95040 0.86457 0.80034 0.83416 0.77611 1.19796 1.20849 1.20966 1.21453 0.93396 0.90597 1.51071 0.92388 1.19338 0.87264 0.81898 0.98676 1.48098 1.44948 1.34571 1.03543 1.21878 0.95502 0.96581 0.87250 1.22851 1.02865 1.02542 0.91623 1.22990 0.98304 0.99253 0.99627 1.23012 1.00859 0.96844 1.01293 1.18126 0.81445 0.82805 0.84632 1.90763 1.58093 1.61302 1.30789 1.20450 0.98855 0.97381 0.95183 1.22783 0.98457 0.92725 0.99067 1.21036 0.96782 0.98491 0.97685 1.21169 0.95420 0.91439 0.96865 1.98362 1.63151 1.44630 1.98647 1.20993 1.00391 0.94881 0.97769 1.21272 0.92582 0.95768 0.97727 0.92761 0.93810 0.94462 0.89957 0.88550 0.87402 0.88209 0.88862 0.88767 0.88561 0.80633 0.84648 0.84620 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.33 5.14 -5.19 -0.03 6.30 16 10 N -0.58 -12.11 2.47 -176.19 -0.44 -12.54 16 11 C 0.11 1.76 5.12 -4.04 -0.02 1.74 16 12 C -0.18 -2.39 4.03 -90.62 -0.37 -2.75 16 13 C -0.16 -2.03 10.18 -26.74 -0.27 -2.31 16 14 C -0.18 -1.83 9.98 -26.74 -0.27 -2.10 16 15 C 0.54 11.44 7.53 -12.35 -0.09 11.35 16 16 O -0.53 -13.41 16.16 5.32 0.09 -13.32 16 17 C -0.12 -1.88 5.62 -104.96 -0.59 -2.47 16 18 C -0.11 -1.48 7.53 -39.19 -0.30 -1.78 16 19 C -0.12 -1.37 9.81 -39.60 -0.39 -1.76 16 20 C -0.02 -0.26 6.33 -39.38 -0.25 -0.51 16 21 Cl -0.08 -0.78 28.95 -51.86 -1.50 -2.28 16 22 C -0.12 -1.46 9.81 -39.61 -0.39 -1.85 16 23 C -0.05 -0.79 9.59 -39.20 -0.38 -1.17 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.04 1.27 7.45 -51.93 -0.39 0.88 16 26 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 27 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 28 H 0.10 1.33 4.26 -51.93 -0.22 1.11 16 29 H 0.11 1.52 8.13 -51.93 -0.42 1.10 16 30 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.18 2.16 2.34 -52.49 -0.12 2.03 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.14 2.10 7.82 -52.48 -0.41 1.69 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -31.66 327.86 -9.41 -41.07 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.47 Total: 1.64 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.75 Total: -10.70 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.30 Total: -38.03 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -9.41 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264090678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.110 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds